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Homology
BLAST of mRNA_H-paniculata_contig10746.472.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.110e-10 Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 610 EVLEAKGLEGGRTLLMYAAAAGRKAWFVALVEDTKRKLGVTSLVKQLRQIDANRAPLLFHAASSNSR-RCLREVERVLLEEVG 855
E L +K E G+ LLMYAAA G + WF+ L++ + +LG+ +LV +LR+ID + PLLFHAASSN + C R + ++L +G
Sbjct: 36 EALLSKCPEDGQNLLMYAAAHGNEEWFLHLIDHIRSQLGIPALVTELREIDIDGCPLLFHAASSNCKYSCFRTAKYIILSVLG 118
BLAST of mRNA_H-paniculata_contig10746.472.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 6.340e-9 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 616 LEAKGLEGGRTLLMYAAAAGRKAWFVALVEDTKRKLGVTSLVKQLRQIDANRAPLLFHAASSNSRR-CLREVERVLLEEVG 855
L++K E G+ LL YAAA GR AWF+ + + K+GV +L K+LR++D +RAPLLF+AA+S + C R ++ + +G
Sbjct: 54 LQSKAPEDGQNLLTYAAAQGRDAWFLFIAGKIRSKMGVRALAKELRELDIDRAPLLFNAAASRGEKSCFRTAHDLVYKALG 134
BLAST of mRNA_H-paniculata_contig10746.472.1 vs. uniprot
Match: A0A6H5JNN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN7_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 6.040e-8 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 616 LEAKGLEGGRTLLMYAAAAGRKAWFVALVEDTKRKLGVTSLVKQLRQIDANRAPLLFHAASSNSRR-CLREVERVLLEEVG 855
L++K E G+ L+ YAAA GR WF+ + + K+GV +L K+LR++D +RAPLLF+AA+S C R ++ + +G
Sbjct: 62 LQSKAPEDGQNLITYAAAQGRDVWFLFIAGKIRSKIGVRALAKELRELDIDRAPLLFNAAASRGETSCFRTAHDLVYKALG 142
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 75.5 |
Seed ortholog evalue | 3.8e-11 |
Seed eggNOG ortholog | 2880.D8LH99 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | calcium ion transmembrane transport |
EggNOG OGs | KOG3676@1,KOG3676@2759 |
COG Functional cat. | U |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 6 |
Model size | 1330 |
Cds size | 708 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10746.472.1 >prot_H-paniculata_contig10746.472.1 ID=prot_H-paniculata_contig10746.472.1|Name=mRNA_H-paniculata_contig10746.472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MKIVWQTSDVRYQNSIAVLRQDIIDNKDPETSFRDVDSRPHGEMAHVAEV LEAKGLEGGRTLLMYAAAAGRKAWFVALVEDTKRKLGVTSLVKQLRQIDA NRAPLLFHAASSNSRRCLREVERVLLEEVGVGGLREQLHAVDQLGRTVGM YAAWSSQVKVYDEVEEMLREDDERKLFKIDKIRLEENRVERLEARDKSKS PDSMASPGCASPVHRVRVEGERFHPRRRRMCPIFA* back to topmRNA from alignment at H-paniculata_contig10746:720..7778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10746.472.1 ID=mRNA_H-paniculata_contig10746.472.1|Name=mRNA_H-paniculata_contig10746.472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7059bp|location=Sequence derived from alignment at H-paniculata_contig10746:720..7778+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGGTTACAACCCCAATCTCCTCGCACTGTAATTGACCCTCTATTTAGTTC
ACCAATATTGAGTACGGTACGCAGAGAACAGCTGTTTGAACATCATCATC
ACCATCAACAGCAGCAAAAGCACATCAAATCACACCACACCACACCAGGC
ACCACTCGGATGGTATAGCAGACCGATAAATACAACCTTCACTGTGCAGC
CCACAGGAAACCGAAGACGAAGAAAAGCGAATTTGAAGACATCCAACACC
AGGCATCTCCGTGCACTCAATAGATGGGCAGATTTTTGATCGGTTCATCC
GCAGATACAGCACGGACAAAGATTCTTGGGATAGACGTGAGCAAATTGAT
AGGTGTGTGTCTCTGTGTGTGTGTGAGCCCTTGTAGGATTATTTCTTGCG
TTTCTATTGTTTCTGGATGATTTATTGTAGCAAACGGGGCCATCGTTGAT
CGAAGGGGGCGTGGGCTGGCGTTGTTGAATCCTTCGACCGGAGGGCTTGC
GAAATCGATTTTGATGGCTCTCCTGTACGATTATCAGTTATACTCTTTGA
ATCTTTCACTAGTATCCGGATGGTGGTTGCGCAGACGGCCATATTTTTAT
GGTTGACGATTGATCACGAGTGTACTGGTGCCTGCCCTCACCCTCCGACC
TGGCTCGTGGGCGTTCCATTTTCATGGTTGCCACATTGCGGAGCGGTGCA
GCGGAGCCCAACTGGGTAAACTCGACTCTGTTGGTTCATTTCAATCACCT
CCTTGCATTTGATTCTTTGTTTGTGACCGAGCAGAACAAAATGAACGAGA
GAAGAAAATGTGGGACTTTGAACTGATGGTTTCAACTCCTGACTGTACCT
CTCTATCTTCCGTGTACTGGCCATCTACTGAATAATGGCGTTTACCTATC
CTCGCAATCGCATCATACCGCGGTGTTGCTTGTGCATCCTGGCTGTGTCG
TGTGAGGTTGTGTTTCTGAAATGCTGTTGAGATGAGCATTCGCCTTTTTA
CGTACGGAGCAAAGGATATGACTTACCTACATACTGTCCTTTTCTGAAGC
AAGTAGTACAGAAATTGTTTTCGGCGAGAAGGCAAAAAGGTATATAATCT
GAATACAGGTGTCCAGCACAACACCATGCTACAAGTACTGAGTCTGTGCT
ACATGTACTAGTGTCTGTATTGGTCTCTCTGTCCAAACAGCGGCGGTTAC
TTGTCCTCGCAATCTTGTCATAAGGCGAGTTAGTTTTGCCTGCCTGTCTG
TGTGGAGCAAGTTTGTGTTCATGAAACGTCGTGTAGTGGCGATTTCGCTT
TTGTAGGACCGGAACAACGGTTATGCATGACATACACTCGGAAGGCTCTG
CCCCAGCGGCAAAAAAGCATTCGACAACAGGTTTCCAGCACTACAGTCGT
TACGGTCAGAAATATACCTTACTTCATGGATATGCTGTATGTACTGTCTG
CACTGGGCGGTCCGTTTGAACAGCGGTGGCTTCCTGTTGTGTAATCAGGC
CGTATCTTCATCTCTCTCGCAGAGTGACACAGGCCATGTCTTGACCCTTG
AATTACCACATATTGCTCACAAATTGCCTTTTTATTTATGCAAAAAACTT
TTATCGGAAGAATTATTTGAGTAGTATGACAACGCCTGCGGATCAAACAG
TCGTTGGCCCACTTCAGGCCTAGTTGCTGTTCAAGACCTTTCAACTTAAG
GCCCAATGTACCCTAGACTTGACCTCTGAGAGCCTGTGATTTAATATCTT
GGTACTCGCGAAATCTCACAAATTGGTGAATCCACGAGCGCTGAATCCAC
CCTTTCGACACCTGCTTGCCTATATAGCTTCTCAGTGTGTCACTGGTTTT
GACCCGCCCGGTATGAACTTAACCCAATTCTGACACTAATCGTACCCTTG
ACCCCAACAAAGAGGGTAGAGTCCAGTCACAGGGTGAGGCATTGTGCTGT
TAACGTGCAACTAGAAGACGCCTTCACCGATATTTGTCGAATGCGATTAT
TGCAACCGAAATAACAACTTGTTGTCGAAATCCCGTGCTGACAAAGCCGC
GAACACTGCCACTGCAACCCTGCCCCCTACCTCTACCCACATTCAAAGAT
AAGATCAGATCCCAGGAGCGTCTGAGATCGCCCAAATACTATCTGTGCCG
CTGTGTGACGTGGCGGCGACCCTATGGATTTTCTGTGAGTCCGCGTGCCG
GGTAAAGCTGCCACACGCCACTCCTAACCGTAACGATAACCGCAACCGTA
ACGATAACCGCAACCCTACCCCTTTTACAGTAACCCTTGGCGTGTCAATT
CTGGACCCCGTAGGTTCTGAAATTGGCAACAGCCAAAACGGAACGTCCTG
GAGCCTGGTTGCAGGCTTCGGGCAGGTTCGAGCACCAGATGGGTAAATAT
ACCGACTAAGAAACACATAAGCACCTCACGCACAAATTGATGGTTTGTAA
GAACGGCGGGGATTAGCAGAATTAACGAGATATTGACGGATATACTCCTG
AGTATATTATATCATACAAGCTGTGTAGCTGAGTGGTGAGCTGCTTTCTG
CACGAGGCTTAGAAAACAAAGAATGGATAAGAACTCATGGCAGAAGAACC
AGTGGATTACGACACTTGTGATATGAGACTAAATATCCATAACGACCCCC
GACCAATTAAGATATACTTACGGAACAGTCAAATGCATACGGACCTGTGA
GTTGGCACGAATGTCGCTGAACGGATGATGGGCATGCCATGAAATGAAAC
GAAAAACTTCGTCTGGGGATGAAATTATGTATTACCGTATTGTCGGAACA
ATAATTAGTGTACCATCGCGGCATTTGACCGTGCCATTCTCAACCAAAAA
GTGAGCTGACCCGTACTACATTCCAAAATTCCTCAGCCACTCTTGAAAAC
GCCTTCATGACAAAAGAAAGACAGAAAGCAAAGAGCTCAGCTCTTATCAC
CATAACAGGATACTAGTGCTAGACAGATCAACTCCCATCATGATGCCCGT
CACGAAGCTCTCCGTACCCCATAAACCAAAAACTGAACCACGCCGCCACT
TCGTTTTTTCATAGACACAAACTTCATGAAATCTCAAGTCAGACCCGCAA
TTACGTGTACGCTTGTTCAGACCCGCGCTCACACATGTGTTCTCTAGGGT
CCTGAGGTTGAACGGTAGCCTGCCGGTTCGGCACCGTGGAACTACCGTAC
AGAAACGGTACGGTACCGTCGTTTCATGGTATGATAATGGTAAAGTAGCT
TTACGGTAAGTCGATATTGCGGTAGCTGTAACAGTATCCAGCTCTGGTAT
CGCGGTAAATCGCGTTTGGCGTTATCATACACGGTAATGGTAATGGGAAA
TCGTGATTTTCATGGTATCTTACCGAATAGCGAATATCGTGGTTCTGGCG
CGGTAGTTTTACTGCGATAATTTTACCGTGGGTACCCCTGATAATTTGGC
GTAGCGTCAGAAGTGTTAAGGCCCGGTATTCAGTGCACTACCGATCCTGT
AGCGCGTGGTAGAGTACTATACAGGGCTTTGATCCAATTTTATGCACTAC
CACACTTTTGTGAGGTGCCCCGCATAGCGCTATCAGACACCAGGGCGATA
ACAACGCTGTGCGGGGTCTGAACGCAGCCCGGTCAAAACCTCAGAACCGG
CGTTCATGACTGACGCACTGTAGTAGTGGAGTTACCACAATATGCAGGGA
GCATACCACACAGTTGTTAGGGTTTCGACACTATCCCGCGTAGGTAGAGC
CCACCACAACTGCGCAGTGAAGTAATCAATCACTTTCCATGCGTGAGGAG
ATGTAGCTGATTTGATGACCGTGTTCCGCGGACGTGCTTCCAAGCCACAT
CGCACTATTATTTAGGACGCCCGTCTAAACCACCGCGCCAAATCTATTGT
GGCACCCGGTATATTTCCGGTACCGTGCAATTCCTCTGTAGATATGGCTG
TCAACACCGACACCGGTTGTTCACATCACCGCCTTATAGGAGAAACCCAA
CGTTACTCGCGACCCTGGCTGATACTATATGCTACCCTCTCCCCCCCCCA
ATCGTTGTGTGCCAGTTTGCCGGGCGCCGAGAGAGTAGGAAGTAAAGAAG
ACCCCTGAAGAGAGAAGACAACGAGACGGCTGTGGCTTTACGCGGGTGTC
TTTTCCGCTGCCCCAGAAACGAAGCAAAATGAAAATTGTTTGGCAAACAA
GTGATGTGGTGAGGTATTCTACCCTGGACGAAGTGCATCCACTGAAGTAT
GAACAAAATCTGAACGGGAATCTGGGGGGAGGGGGGGGAGGGAGGGATCA
TTGCCTCGGATGAATTCGGGCTTCGGGTGTATGTCCGCTGCTGGTGTATA
CGTGAAATTCATGTTGTAATTTCTTCGGGTTTTTTACTTGACAGTCTCCT
ACGCGCCAAAGGAAGTATGGACGTCAGGGTTGCCGCAGTGTGAATAATTT
CACATGGCATGACCACCTTACACCAACTCCCATATTCGATAAATCAGTAC
ACCCAAATGGCATCTGTTAGACCGCTCTGTAGGTCTCTGCATTACGTAGG
CGATGACCTACAGTAGAACGGCAACGCTTAATGGCGCTTTGGTGTGGTAG
TGCCCAGTGACTTGCACTTGCAAAAGCGGCTGCGGCAGCGTCCTTTTTGT
GAACATCAGCTAAGTCTCTTGTAAAATTATCAAATGACTTTGTAACGGAA
GTGATACGTCGCATTCACAACGGAATAATGGAATAACTGACCATCAAATA
TACTCAGCATTCCAGCTAGGCGAGCAGCGCCCGTTGTTCTCATTGTGCGT
GGAGTTTTTAGTTGCAGATATCGTTAACGTGATTGATATTGTCGTAAGTA
ACATACCGTTTGTGCTCAACTCGTCCTTGCCGTTTCTATTCCCTCTTCAC
CTCTTCAGCGGTATCAAAACAGCATTGCTGTTCTGCGTCAGGATATCATA
GACAACAAAGATCCGGAGACATCATTTCGAGATGTGAGCCTGTTTATGCA
ATCAAATTTTGGAGGTGCCATCAAGTTCGCGTGAGGTAGGGTTGGCAGAT
GGGAGTAATTATTAGAGAGCAGGCAAGCTCGAGATGGGCCGATCGTGTTC
ACACCAGGGGCAGATGTGGCGGATGATGTTGTCCTCATTTTGTTAACCAC
TGAGGGCTTCGAGGAACCCTCCCCGGTATTTTGCACCGTGTCTCTCGTTG
AAATTTTGGTCGTGGTGTGTGTGAAACTGCTCAGCTAGCTACAGGGCTGT
TGGTAACGTTTTAACACGGCATGCCCCCCCTGCGGTACACGTTACGTTGG
AAGCCGCCCCCTGAATTTTACGGAGTATATATAAAAAATGAGGCCTAAAT
TAAGGCCGGCATCCGCCACATACTGGATTGAGAAGAGGTGCTGGACAAGT
ACGGGCATATTTAATTTAGTCCCGGGTGACGGCGTCAACTGCGCCAGCTC
CTTGGTCTGACGTTTCGAAAATACTAAGTAATGTTTTCAACTGCAGTGGA
TGCGTCCACCGTGCGTTTCAAACTTCGCTGTGTCTGTTGCAAATACCCGC
CGCGGTGTGAGATTGGAATAGCCGCCTCGCCTCCTTTCCCCTCTTGTTGC
GTCTTTTGTGGGACATCCTAGGTGGACTCGAGACCTCATGGTGAGATGGC
ACATGTCGCAGAAGTGCTGGAGGCCAAGGGCTTAGAAGGCGGGCGAACCT
TGCTCATGTACGCAGCTGCGGCAGGTCGAAAGGCGTGGTTTGTTGCTCTG
GTTGAAGACACGAAACGTAAGGTGACCGCTGTCTATACTTGGCAGTCTCC
ACCCCCCTCACGTCTAGGTACGACTGTGTAGAGCTGGGCTGAAGCCAACT
ACGCAGTACCTGCTTTTCTTCGGAGAGATAGCTCTGCTGCGTAATTGACG
CCCCACGGGGCTGATTCTCAAAGACAGAAAAGTCTGAATTGGAGTGTGCA
GTTTGAGTTCCCCGTCTTCAGTATCTTGAGGGTGCTCTTGCTTGGGGCAG
TTGGATATCCCTTCCTAGAGAAATTGAACTCCTTACATCCCACAGTGACG
GATTGGGAGATAACATTTTCCCCGCTCCTGTTGGTGGAGAATTAACTTAT
ACGGGACTCGCCCTCGTCCCATTACCACAACATCCCATTTCCACGACCTT
GCAATTCGAACAGCTGGGTGTTACTTCGTTGGTGAAGCAGCTGCGACAGA
TAGACGCCAACAGGGCGCCGCTGCTGTTCCATGCTGCGTCTAGCAACAGC
AGGCGATGCCTCAGAGAGGTCGAACGTGTCCTATTAGAAGAGGTGGGAGT
GGGAGGGCTTAGGGAGCAACTGCATGCCGTGGACCAACTCGGGAGAACTG
TAGGAATGTATGCTGCATGGAGCAGCCAAGTGAAGGTGTGGTTTTATGTC
AGATGACATTTTTTTTTAATGACCAGTTTATGTCAAATCCTTAGATTTGC
TCAGTGTCCCATGTACTTCTAGTATCTGAGCAGATCTAACATAATTATTC
ATCTAGTGTTTATGTAGTTGATCTAGCATAAGCCAATTATTGATGTACTC
AGCATAAGAATTTCAGCACAACGAGGGGATCTTTTTAGCGTATAATGACG
AACTCAAGAGAGTGTCGTCGTACTCTCGCCACCTGTACCTGTTCACTTCG
ATTCCTCCCATCTTGACTCAGGTGTACGACGAAGTCGAGGAGATGCTACG
GGAGGATGATGAGCGGAAGTTATTCAAGATAGATAAGATCCGACTTGAGG
AGAACAGAGTTGAGCGTCTGGAGGCTCGGGACAAAAGTAAGTCGCCTGAC
TCGATGGCAAGCCCGGGTTGTGCTAGTCCAGTTCACCGCGTCAGGGTAGA
GGGTGAACGTTTCCACCCTCGGCGGCGGAGGATGTGCCCTATCTTCGCAT
AACAGAAAGTGATCCTCAGTTCATGTGAACGAGGCGTACAGTGAGATCCA
CGGGGAGCAAACAAACTACTGTGTATTCATGTTCTTACACGGAGACATAC
TGTGTCTACAAAGTACTTTTTCGAGAAGAACGCTGGTTTTTTCGTTCCTG
TCTTTCCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig10746:720..7778+ >mRNA_H-paniculata_contig10746.472.1 ID=mRNA_H-paniculata_contig10746.472.1|Name=mRNA_H-paniculata_contig10746.472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig10746:720..7778+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAAAATTGTTTGGCAAACAAGTGATGTGATGAAAATTGTTTGGCAAAC AAGTGATGTGCGGTATCAAAACAGCATTGCTGTTCTGCGTCAGGATATCA TAGACAACAAAGATCCGGAGACATCATTTCGAGATCGGTATCAAAACAGC ATTGCTGTTCTGCGTCAGGATATCATAGACAACAAAGATCCGGAGACATC ATTTCGAGATGTGGACTCGAGACCTCATGGTGAGATGGCACATGTCGCAG AAGTGCTGGAGGCCAAGGGCTTAGAAGGCGGGCGAACCTTGCTCATGTAC GCAGCTGCGGCAGGTCGAAAGGCGTGGTTTGTTGCTCTGGTTGAAGACAC GAAACGTAAGGTGGACTCGAGACCTCATGGTGAGATGGCACATGTCGCAG AAGTGCTGGAGGCCAAGGGCTTAGAAGGCGGGCGAACCTTGCTCATGTAC GCAGCTGCGGCAGGTCGAAAGGCGTGGTTTGTTGCTCTGGTTGAAGACAC GAAACGTAAGCTGGGTGTTACTTCGTTGGTGAAGCAGCTGCGACAGATAG ACGCCAACAGGGCGCCGCTGCTGTTCCATGCTGCGTCTAGCAACAGCAGG CGATGCCTCAGAGAGGTCGAACGTGTCCTATTAGAAGAGGTGGGAGTGGG AGGGCTTAGGGAGCAACTGCATGCCGTGGACCAACTCGGGAGAACTGTAG GAATGTATGCTGCATGGAGCAGCCAAGTGAAGCTGGGTGTTACTTCGTTG GTGAAGCAGCTGCGACAGATAGACGCCAACAGGGCGCCGCTGCTGTTCCA TGCTGCGTCTAGCAACAGCAGGCGATGCCTCAGAGAGGTCGAACGTGTCC TATTAGAAGAGGTGGGAGTGGGAGGGCTTAGGGAGCAACTGCATGCCGTG GACCAACTCGGGAGAACTGTAGGAATGTATGCTGCATGGAGCAGCCAAGT GAAGGTGTACGACGAAGTCGAGGAGATGCTACGGGAGGATGATGAGCGGA AGTTATTCAAGATAGATAAGATCCGACTTGAGGAGAACAGAGTTGAGCGT CTGGAGGCTCGGGACAAAAGTAAGTCGCCTGACTCGATGGCAAGCCCGGG TTGTGCTAGTCCAGTTCACCGCGTCAGGGTAGAGGGTGAACGTTTCCACC CTCGGCGGCGGAGGATGTGCCCTATCTTCGCATAAGTGTACGACGAAGTC GAGGAGATGCTACGGGAGGATGATGAGCGGAAGTTATTCAAGATAGATAA GATCCGACTTGAGGAGAACAGAGTTGAGCGTCTGGAGGCTCGGGACAAAA GTAAGTCGCCTGACTCGATGGCAAGCCCGGGTTGTGCTAGTCCAGTTCAC CGCGTCAGGGTAGAGGGTGAACGTTTCCACCCTCGGCGGCGGAGGATGTG CCCTATCTTCGCATAA back to top
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