mRNA_H-paniculata_contig10741.471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10741.471.1
Unique NamemRNA_H-paniculata_contig10741.471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.200e-46
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 ATSICFSPPGIAQSYRKFSVGAQALDRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            ATSICFSPPGIAQSYRKFSVGA ALDRALLH+MSVS+IPE+DFVPMIDTQVGLIQLISC T GKALQLSCHMLEGT+CD+I+HCGD+R
Sbjct:  856 ATSICFSPPGIAQSYRKFSVGAGALDRALLHQMSVSIIPEYDFVPMIDTQVGLIQLISCDTAGKALQLSCHMLEGTICDIIRHCGDDR 943          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A8K1FCC7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCC7_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 9.920e-26
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    4 TSICFSPPGIAQSYRKF--SVGAQA--LDRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            TS+ FSPPG  QSY K    +G +A  +DRA LH  SV+V+PE+D + +ID Q G+IQ ISC+T   ++QLSCHMLEGTLC+L++HCGD R
Sbjct:  756 TSVTFSPPGFVQSYSKLVHDIGGKATKVDRANLHHRSVTVVPEYDPITLIDAQAGMIQKISCNTPHLSMQLSCHMLEGTLCNLLEHCGDAR 846          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A3M6VSC6_9STRA (Lipase_3 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.200e-24
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    4 TSICFSPPGIAQSYRKF--SVGAQAL--DRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            TS+ FSPPGI QSY K    +G  ++  DRA LH  +V+V+PE+D + MID Q G+IQ ISC T   ++QLSCHMLEGT+C+L++HCG  R
Sbjct:  773 TSVTFSPPGIVQSYSKLVHHIGGTSMKVDRASLHHRNVAVVPEYDPITMIDAQAGMIQKISCDTPHLSMQLSCHMLEGTICNLVEHCGSAR 863          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A024GSX6_9STRA (Lipase_3 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GSX6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.220e-24
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    7 SICFSPPGIAQSYRK----FSVGAQALDRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            SI FSPPG  QSY K    F      ++R+ LH+ +++VIPE+D + +ID QVGLIQ ISC+T   ++QLSCHMLEGTLC+L++HCGD +
Sbjct:  725 SITFSPPGFVQSYSKLVHTFGGREYKVERSTLHQFNIAVIPEYDPITLIDVQVGLIQKISCATPHLSMQLSCHMLEGTLCNLLEHCGDRK 814          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: K3WLR8_GLOUD (Lipase_3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLR8_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 5.640e-24
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    7 SICFSPPGIAQSYRKF--SVGAQAL--DRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGD 258
            SI FSPPG  QSY K    +G   +  +RA LH +SV+V+PE+D V MID Q GLIQ ISC T   ++QLSCHMLEGT+C+L++HCGD
Sbjct:  686 SITFSPPGFVQSYSKLVHDIGGTTIKVNRANLHHLSVAVVPEYDPVTMIDAQAGLIQKISCDTPHLSMQLSCHMLEGTVCNLLEHCGD 773          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A6A3GSJ1_9STRA (Lipase_3 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GSJ1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.660e-24
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    4 TSICFSPPGIAQSYRKF--SVGAQAL--DRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            TS+ FSPPG  QSY K    +G  ++  DRA LH  S +V+PE+D + MID Q G+IQ ISC T   ++QLSCHMLEGTLC+L++HCG  R
Sbjct:  370 TSVTFSPPGFVQSYSKLVHHIGGTSMKVDRASLHHRSFAVVPEYDPITMIDAQAGMIQKISCDTPHLSMQLSCHMLEGTLCNLVEHCGCAR 460          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A484DZU3_BRELC (Lipase_3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZU3_BRELC)

HSP 1 Score: 103 bits (257), Expect = 7.730e-24
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 ATSICFSPPGIAQSYRKF--SVGAQAL--DRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            ATS+ FSPPG  QSY K    +G +++  DRA LH  + +V+PE+D V MID Q G+ Q ISC T   ++QLSCHMLEGT+C+LI+HCG  R
Sbjct:  766 ATSVTFSPPGFVQSYSKLVHHIGGKSMKVDRASLHHRNFAVVPEYDPVTMIDAQAGMTQKISCDTPHLSMQLSCHMLEGTICNLIEHCGSAR 857          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: F0VYR6_9STRA (Transmembrane protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYR6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.050e-23
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    7 SICFSPPGIAQSYRKF--SVGAQA--LDRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            S+ FSPPG+ QSY K   + G Q   ++R+ LH+ +++VIPE+D + +ID Q GLIQ ISC+T   ++QLSCHMLEGTLC+L++HCGD +
Sbjct:  702 SVTFSPPGLIQSYSKLVHTFGGQKYKVERSKLHQYNIAVIPEYDPITLIDVQAGLIQKISCATPHLSMQLSCHMLEGTLCNLLEHCGDHK 791          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: A0A5D6XN61_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN61_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.050e-23
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    7 SICFSPPGIAQSYRKF--SVGAQA--LDRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            SI FSPPG  QSY K    +G +A  ++RA +H  SV+VIPE+D V MID Q G++Q ISC T   ++QLSCHMLEGT+C+L+++CGD R
Sbjct:  755 SITFSPPGFVQSYSKLVHDIGGKATKVNRASIHHHSVAVIPEYDPVTMIDVQAGMVQKISCDTPNLSMQLSCHMLEGTICNLLENCGDPR 844          
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Match: G4Z971_PHYSP (Lipase_3 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z971_PHYSP)

HSP 1 Score: 102 bits (254), Expect = 1.960e-23
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    4 TSICFSPPGIAQSYRKF--SVGAQAL--DRALLHEMSVSVIPEHDFVPMIDTQVGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER 264
            TS+ FSPPG  QSY K    +G  ++  DRA LH  S +V+PE+D + MID Q G+ Q ISC T   ++QLSCHMLEGTLC+L++HCG  R
Sbjct:  722 TSVTFSPPGFVQSYSKLVHHIGGTSMKVDRASLHHRSFAVVPEYDPITMIDAQAGMTQKISCDTPHLSMQLSCHMLEGTLCNLVEHCGSAR 812          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10741.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF5_ECTSI2.200e-4688.64Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A8K1FCC7_PYTOL9.920e-2657.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VSC6_9STRA1.200e-2454.95Lipase_3 domain-containing protein n=1 Tax=Peronos... [more]
A0A024GSX6_9STRA2.220e-2454.44Lipase_3 domain-containing protein n=2 Tax=Albugo ... [more]
K3WLR8_GLOUD5.640e-2457.95Lipase_3 domain-containing protein n=1 Tax=Globisp... [more]
A0A6A3GSJ1_9STRA7.660e-2454.95Lipase_3 domain-containing protein n=1 Tax=Phytoph... [more]
A0A484DZU3_BRELC7.730e-2454.35Lipase_3 domain-containing protein n=1 Tax=Bremia ... [more]
F0VYR6_9STRA1.050e-2353.33Transmembrane protein putative n=1 Tax=Albugo laib... [more]
A0A5D6XN61_9STRA1.050e-2355.56Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
G4Z971_PHYSP1.960e-2353.85Lipase_3 domain-containing protein n=6 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10741contigH-paniculata_contig10741:960..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D8LHF5
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Lipase (class 3)
EggNOG OGs2DUDU@1,2QVZS@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.0077143-CDS-H-paniculata_contig10741:959..11091622928778.0077143-CDS-H-paniculata_contig10741:959..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10741 960..1109 +
1691480616.0970192-CDS-H-paniculata_contig10741:959..11091691480616.0970192-CDS-H-paniculata_contig10741:959..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10741 960..1109 +
1622928778.0197067-CDS-H-paniculata_contig10741:1516..16331622928778.0197067-CDS-H-paniculata_contig10741:1516..1633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10741 1517..1633 +
1691480616.1084783-CDS-H-paniculata_contig10741:1516..16331691480616.1084783-CDS-H-paniculata_contig10741:1516..1633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10741 1517..1633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10741.471.1prot_H-paniculata_contig10741.471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10741 960..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10741.471.1

>prot_H-paniculata_contig10741.471.1 ID=prot_H-paniculata_contig10741.471.1|Name=mRNA_H-paniculata_contig10741.471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
ATSICFSPPGIAQSYRKFSVGAQALDRALLHEMSVSVIPEHDFVPMIDTQ
VGLIQLISCSTEGKALQLSCHMLEGTLCDLIKHCGDER*
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mRNA from alignment at H-paniculata_contig10741:960..1633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10741.471.1 ID=mRNA_H-paniculata_contig10741.471.1|Name=mRNA_H-paniculata_contig10741.471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=674bp|location=Sequence derived from alignment at H-paniculata_contig10741:960..1633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACGTCCATTTGCTTCTCGCCCCCCGGTATTGCTCAGAGCTACCGCAA GTTTTCTGTGGGAGCGCAAGCTTTGGACCGCGCGCTTTTGCACGAAATGA GCGTCAGCGTTATCCCGGAGCACGATTTCGTGCCAATGATCGACACACAG GTGAGAAAAGCGAAAGTGCATTATTATTATCATTATTATTATTGTCACCA TTGCTGCTACTACTTTTATCTAATGTTTTTATAGTTGTGTAGTGGTGATG GTTTATCCCAATAAAATAGACTGTTCGGTAATGCAGATGTTGTTGAGCCT ACAGTAAAGGATGAGAAGCGGATATTTCTTGGCGCAAAATTAAACCAAAG CATAGCAAAAGATGAAGATCGTTATATTTAAAAGTTAAAAATTAAAAATC GAAGCCTTGAAAAATTACAGGTTTTTCTCCAACTTGTCTTCTCGTCACCG CCTGTTACGGTCACTCAATCTGTTTTTTACTGTTGCCATGACTGTCGCTC TTGTGTCTCCTTCATCCTGTCTTGTCGTTCATTCGATTTACTTCGGCACG CTTGCAGGTGGGTTTGATTCAGCTGATATCTTGCAGCACGGAAGGCAAAG CACTCCAGTTGAGCTGCCATATGCTCGAAGGCACCCTATGTGACCTCATC AAGCACTGCGGGGACGAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10741:960..1633+

>mRNA_H-paniculata_contig10741.471.1 ID=mRNA_H-paniculata_contig10741.471.1|Name=mRNA_H-paniculata_contig10741.471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig10741:960..1633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACGTCCATTTGCTTCTCGCCCCCCGGTATTGCTCAGAGCTACCGCAA
GTTTTCTGTGGGAGCGCAAGCTTTGGACCGCGCGCTTTTGCACGAAATGA
GCGTCAGCGTTATCCCGGAGCACGATTTCGTGCCAATGATCGACACACAG
GCGACGTCCATTTGCTTCTCGCCCCCCGGTATTGCTCAGAGCTACCGCAA
GTTTTCTGTGGGAGCGCAAGCTTTGGACCGCGCGCTTTTGCACGAAATGA
GCGTCAGCGTTATCCCGGAGCACGATTTCGTGCCAATGATCGACACACAG
GTGGGTTTGATTCAGCTGATATCTTGCAGCACGGAAGGCAAAGCACTCCA
GTTGAGCTGCCATATGCTCGAAGGCACCCTATGTGACCTCATCAAGCACT
GCGGGGACGAGAGGTGAGTGGGTTTGATTCAGCTGATATCTTGCAGCACG
GAAGGCAAAGCACTCCAGTTGAGCTGCCATATGCTCGAAGGCACCCTATG
TGACCTCATCAAGCACTGCGGGGACGAGAGGTGA
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