mRNA_H-paniculata_contig10740.470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10740.470.1
Unique NamemRNA_H-paniculata_contig10740.470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.800e-21
Identity = 84/217 (38.71%), Postives = 105/217 (48.39%), Query Frame = -1 
Query:  877 VGDVQHTLVTAGESVAPDL----GGKKS-AIKAKLGNNWTGPLKTL--GVGRCKIGEQVVGSKLLFLD-------RPYNERTAFHVPVLRCKRCFRSQEKGNRPEFLP*QTCSYVLNKFSELAPPFLLISYDVNIELDVERATPQEIKAH*VR---SRPGGTK--TRWENQEHTT*ENEHCIDQYGYAVRNYWASGNDKRQTASDNKTYRNFRTPAA 1470
            V D + T+   GE V        G +KS A+  KL +NWTGP K L  G G    GE+V G  +L+LD          NER    V V RCK+C+   E  +RP FLP     YVLNKFSELAPPF L + DV  E+D     P +I  H +    S  G  +  T W      T E+E  ++QYG  V  YW       Q+A  N  YR +R   A
Sbjct:  793 VYDEKSTISGGGEHVLKSRMNSRGKEKSFALIPKLAHNWTGPYKVLFVGPGTDPEGEKV-GPNILYLDVNKDEPGTNINER----VSVYRCKKCYTQHENEDRPRFLPWGFSKYVLNKFSELAPPFHLTAEDVEEEVDSRELVPCKISRHRICRGISGKGAVQYYTHWTGLAKCTWEHEVELEQYGDVVLKYW--NEQPEQSAGGNIRYRRYRIQGA 1002
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A836CB09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB09_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.870e-21
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFKTIKVFELP 243
            + QGW+    R  GD R++RA+SEA+ ++YGLQ  AL RAQ   PDSHT  N  G   FASLS FY Y RW +TIK+FELP
Sbjct:   69 LAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 149
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A024TE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE78_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.420e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFKTIKVFELP 243
            + QGW+V+K R VGD  IR+   +A+C+ + LQAAAL+RAQ++ P+SH++ N V  +  A+L   YGY   FKTIKVFELP
Sbjct:   78 LAQGWLVWKTRLVGDALIRKTFCQAYCLCFLLQAAALVRAQVSSPESHSVLNWVNIIVLAALGAAYGYFVVFKTIKVFELP 158
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A8J5ITE1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ITE1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.460e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFKTIKVFELPG 246
            + QGW+V++ R V D  IRR   +A+CI + LQA ALLRAQ+A P+SH++ + +  +  +SL   YGY   FKTIK FELPG
Sbjct:   55 LAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQMASPESHSMLHWINILLLSSLGCAYGYFLVFKTIKAFELPG 136
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: G4YMX6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YMX6_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 9.500e-17
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFKTIKVFELPG 246
            + QGW+V++ R V D  IRR   +A+CI + LQA ALLRAQLA P+SH++ + V  +    L   YGY   FKTIK FELPG
Sbjct:   60 LAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQLASPESHSMLHWVNILLLGGLGCAYGYFLVFKTIKAFELPG 141
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: W2G8X2_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2G8X2_PHYPR)

HSP 1 Score: 86.3 bits (212), Expect = 2.360e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFKTIKVFELPG 246
            + QGW+V++ R V D  IRR   +A+CI + LQA ALLRAQ+A P+SH++ + +  +    L   YGY   FKTIK FELPG
Sbjct:   59 LAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQIASPESHSMLHWINILLLGGLGCAYGYFLVFKTIKAFELPG 140
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A6H5JKZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.390e-14
Identity = 58/153 (37.91%), Postives = 77/153 (50.33%), Query Frame = -1 
Query: 1063 FRSQELGVGDVQHTL----VTAGESVAPDLGGKKSAIKAKLGNNWTGPLKTL--GVGRCKIGEQVVGSKLLFLD----RPYNERTAFHVPVLRCKRCFRSQEKGNRPEFLP*QTCSYVLNKFSELAPPFLLISYDVNIELDVERATPQEIKAH 1491
            +  Q    G  +H L    + +GE        K  A+ +KL   WTGP + L  G G    G +V G KL+ LD     P  + T+  V VLR K+CF    + ++P FLP    +YVLNK+SEL+PPF L   DV I LD  R  P +I  H
Sbjct:  336 YNDQSTITGGGKHVLKPQTIKSGER-------KSFALVSKLAYCWTGPYRVLFVGPGTAPDGREV-GPKLVLLDVRKDEPGKDITS-RVSVLRVKKCFNPHSEDDKPRFLPWAMSNYVLNKYSELSPPFHLTGEDVQINLDTYRNVPWKISKH 479
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BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Match: A0A7R9ZDI3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDI3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.600e-9
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   10 GWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTLWNTVGCVSFASLSLFYGYCRWFK---TIKVFELPGTRG 255
            GW++ ++RSV DGR RRA+ EA C  Y LQ+ A+LRAQ  +  +   W  +       +   YG  R+ K    IKV+ELP + G
Sbjct:   38 GWIILRLRSVDDGRFRRAVCEALCACYALQSLAVLRAQFTDRANTINW--IAITVLVGVGACYGRFRFGKGGELIKVYELPTSAG 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10740.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JWR4_9PHAE2.800e-2138.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A836CB09_9STRA2.870e-2155.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024TE78_9STRA1.420e-1751.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8J5ITE1_9STRA4.460e-1750.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YMX6_PHYSP9.500e-1751.22Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
W2G8X2_PHYPR2.360e-1648.78Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]
A0A6H5JKZ8_9PHAE2.390e-1437.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A7R9ZDI3_9STRA6.600e-940.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10740contigH-paniculata_contig10740:79..2164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog157072.XP_008879518.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AWIT@1,2RZYW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1536
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10740.470.1prot_H-paniculata_contig10740.470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10740 1372..2164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.6811118-UTR-H-paniculata_contig10740:78..5791622928777.6811118-UTR-H-paniculata_contig10740:78..579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10740 79..579 -
1691480616.0618227-UTR-H-paniculata_contig10740:78..5791691480616.0618227-UTR-H-paniculata_contig10740:78..579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10740 79..579 -
1622928777.8978312-UTR-H-paniculata_contig10740:594..13711622928777.8978312-UTR-H-paniculata_contig10740:594..1371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10740 595..1371 -
1691480616.0714874-UTR-H-paniculata_contig10740:594..13711691480616.0714874-UTR-H-paniculata_contig10740:594..1371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10740 595..1371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.9134855-CDS-H-paniculata_contig10740:1371..15301622928777.9134855-CDS-H-paniculata_contig10740:1371..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10740 1372..1530 -
1691480616.0796642-CDS-H-paniculata_contig10740:1371..15301691480616.0796642-CDS-H-paniculata_contig10740:1371..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10740 1372..1530 -
1622928777.940149-CDS-H-paniculata_contig10740:2065..21641622928777.940149-CDS-H-paniculata_contig10740:2065..2164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10740 2066..2164 -
1691480616.087827-CDS-H-paniculata_contig10740:2065..21641691480616.087827-CDS-H-paniculata_contig10740:2065..2164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10740 2066..2164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10740.470.1

>prot_H-paniculata_contig10740.470.1 ID=prot_H-paniculata_contig10740.470.1|Name=mRNA_H-paniculata_contig10740.470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
VCQGWVVFKVRSVGDGRIRRAISEAFCIAYGLQAAALLRAQLAEPDSHTL
WNTVGCVSFASLSLFYGYCRWFKTIKVFELPGTRG*
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mRNA from alignment at H-paniculata_contig10740:79..2164-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10740.470.1 ID=mRNA_H-paniculata_contig10740.470.1|Name=mRNA_H-paniculata_contig10740.470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-paniculata_contig10740:79..2164- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGTCAGGGCTGGGTGGTGTTCAAGGTCAGGTCTGTGGGAGATGGTCG
CATTCGACGAGCAATATCGGAGGCGTTTTGCATTGCCTACGGCCTACAGG
TATGCATAATGTAATTTAATTCCTCGTACAATATGCTCTGCGGGCAAGTC
AAGTTTAATATGGTAAGGCGCCCCTATGAAAAACAGAGGAATTAGATTTT
TTCATACGGTTAAAAATCATCGTGCCACTTTTACGCATCCCAAACTCTTT
GGTTTGAATTCGTCTTTCCATGTACTGTGCTTGACGAAAAGACCAGTAGC
ACCCATCCATTTTCTCTACAAATTTGATAAATAATTATACTCCTGTATTC
GTCAGAAGTTCAAAATATGAAAACGTATGTATTAGAGTGATTTCGCAGAA
GAAACTCCTTTTCTAAATTTAGATTTGGTCATATGTGGCTTACTGTTGGG
AGCTCTAGGTCCTGGATCCCATTTTTTTCTTTTTGTAAGAAGGCGTTATT
GTCGACTGACTGGGGACCGGGTCTTAATAGACTTCTTTTGAGCAAACACT
ATGGGCTCGTGAATTGGCGGGTCACGGCTCTATCTTGTCGTTCACAGGTC
ACCCTCCTCTCTCTATCGCTTGTCTCTTGATCAGGCGGCGGCGCTTCTAA
GAGCTCAACTGGCAGAGCCGGACAGTCATACGCTGTGGAACACTGTCGGT
TGCGTATCCTTTGCCTCTCTCTCTCTCTTCTACGGATACTGTCGTTGGTT
CAAAACGATTAAAGTCTTCGAGTTACCAGGCACGCGAGGATAAACTTGTC
TAGAGGTGTAACATGCGTAGATAGAGTCGGCGGGGTTGAAAGCGGAATGA
AGTACATGTTGATAGTGACGGTGGGATATGGGCAATGAGAGTGATATTTA
TCGCACTTTTGGCAACTTCATCTTGATTGTTGGATCTAATGCATGACATG
TGATGATCACTGCTGTGCGATATTGCGAAGTATCTCACACACGTAGGTTG
TGTCCTGGTACTGACTAAGCTGCACAGTACTCTCGGAACGATACGGCTGT
GGTGGTAGATGTATTGCTTGGCAATGGTCTGGTTTCTTGTATTAGCTGGC
TATACAAGTCACAGCTGGTGGGGCGGCAACACGTTGGGGGCCCTGTTCCA
CCTCCTACACGCACCTATCGTACCCCAGTAGAATCCGACACCTCACTGGC
CACTCCGAGTGGCCCACCCAAGGATCAAACCCGTTTTTCAATTCGAAAAT
CCCTCGCCCACACTCGTACCCTCAACGCCATCTTGAAGAATATGCGCGTC
CCGTTTTCATGTCGTCCGTCAGTAATTTCGGCCAGACCTTGATGGAAGCA
CCTATCACATGACCAGGGGGCATGTAACGGTCACCGGAAGGGAAATAATT
CAGATGGCGTGTGCTGCCGGAGTGCGGAAGTTACGATACGTCTTATTATC
AGACGCTGTTTGACGTTTATCGTTACCAGACGCCCAGTAATTTCGCACTG
CATAACCATACTGATCGATACAATGCTCATTCTCTCAAGTTGTGTGTTCC
TGATTTTCCCACCGAGTTTTGTATTGCACCGAAAGGGTTCCTCCCGGTCT
ACTTCGGACTCAATGGGCTTTAATCTCTTGCGGTGTGGCTCGTTCGACAT
CGAGTTCTATATTGACATCGTAGGAAATTAAAAGAAAGGGGGGGGCGAGT
TCCGAGAATTTATTGAGTACGTACGAGCATGTTTGTCATGGCAAGAATTC
TGGTCGATTTCCCTTCTCCTGTGACCGGAAACAGCGTTTACAGCGCAGTA
CAGGGACATGGAAAGCAGTTCGTTCGTTGTAGGGCCTATCTAGAAATAGT
AACTTGGAACCTACCACCTGTTCACCGATTTTGCACCGGCCTACTCCCAG
TGTTTTGAGAGGACCCGTCCAGTTATTTCCGAGTTTGGCTTTAATTGCCG
ACTTCTTCCCGCCGAGATCAGGAGCGACACTCTCTCCGGCGGTAACCAGA
GTATGTTGTACATCACCCACACCCAGTTCCTGGCTTCGAAAAGAGGGTGT
TTGTGCACGACGTCAACGATTACGGCATTATTTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10740:79..2164-

>mRNA_H-paniculata_contig10740.470.1 ID=mRNA_H-paniculata_contig10740.470.1|Name=mRNA_H-paniculata_contig10740.470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig10740:79..2164- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGTCAGGGCTGGGTGGTGTTCAAGGTCAGGTCTGTGGGAGATGGTCG
CATTCGACGAGCAATATCGGAGGCGTTTTGCATTGCCTACGGCCTACAGG
TGTGTCAGGGCTGGGTGGTGTTCAAGGTCAGGTCTGTGGGAGATGGTCGC
ATTCGACGAGCAATATCGGAGGCGTTTTGCATTGCCTACGGCCTACAGGC
GGCGGCGCTTCTAAGAGCTCAACTGGCAGAGCCGGACAGTCATACGCTGT
GGAACACTGTCGGTTGCGTATCCTTTGCCTCTCTCTCTCTCTTCTACGGA
TACTGTCGTTGGTTCAAAACGATTAAAGTCTTCGAGTTACCAGGCACGCG
AGGATAAGCGGCGGCGCTTCTAAGAGCTCAACTGGCAGAGCCGGACAGTC
ATACGCTGTGGAACACTGTCGGTTGCGTATCCTTTGCCTCTCTCTCTCTC
TTCTACGGATACTGTCGTTGGTTCAAAACGATTAAAGTCTTCGAGTTACC
AGGCACGCGAGGATAA
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