mRNA_H-paniculata_contig1074.468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1074.468.1
Unique NamemRNA_H-paniculata_contig1074.468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.270e-77
Identity = 134/216 (62.04%), Postives = 165/216 (76.39%), Query Frame = 1 
Query:  523 RWINDIKTGDKVIGYVADTTNFAAFVDVGVVRKGSQGKVVPVAGFLHVSEIRGAYGLENTTHAKECEVEVKKGIHLTAYIKDVFPNAGRLTLSLDPSITKDKVLRSRGHKRNRSIVARRERLVETKRVPEVGEVTEGYVRKVHDDFLLVDVMHAQLSVLRRAMI-SQVTGQGYVQLGDKVKAGDRLTVRIKDVVKKTVRGTENVKPIVEFVGWGGL 1167
            RWI ++KTGDKVIGYVADTTNFAAFVD  VVR+GS+ K+VPV GFLH+++I+  Y LE T   K+CEVEVKKGIHLTAY+KDVFPNAGR+TLSLDP+I KDKVL+ R  KR RS  +RRERL +  R   VG++ EGYVR+VH+  LLVDVM AQLSVLR + I +   GQ +V L +K K GD +TVRI+D+     RG ++ K  ++FV WGGL
Sbjct:  119 RWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRGAKDDKATIDFVAWGGL 334
[Close]
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.270e-15
Identity = 73/252 (28.97%), Postives = 108/252 (42.86%), Query Frame = 1 
Query:  529 INDIKTGDKVIGYVADTTNFAAFVDVGVVR-----------------------KGSQGKVVPVAGFLHVSEIRGAYGLENTTHAKECE-----------VEVKKGIHLTAYIKDVFPNAGRLTLSLDPSITK---------------------DKVLRSRGHKRNRSIVARRERLVETKRVPEV---GEVTEGYVRKVHDDFLLVDVMHAQLSVLRRAMISQVTGQGYVQ-LGDKVKAGDRLTVRIKDVVKK 1107
            ++++KTG ++IG V D + +AAF+D GV R                       +G+ GK+ P  GFLH S+I  A                          +KKG H++ Y+KDVFPN+GR T++LDP+IT+                     +KV   R  KR  + +ARR R   T   P     G+   G + KV +  LLVDV    L  +    I Q  G  +++ L D  + G  +  R+     K
Sbjct:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADK 345
[Close]
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.290e-14
Identity = 53/154 (34.42%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:  529 INDIKTGDKVIGYVADTTNFAAFVDVGVVRKGSQGKVVPVAGFLHVSEIRGAYGLENTTHAKECEVE-----VKKGIHLTAYIKDVFPNAGRLTLSLDPSITKDKVLRSRGHKRNRSIVARRERLVETKRVPEVGEVTEGYVRKVHDDFLLVDV 975
            +  ++ G ++ G V   T FAAF+DV VVR+G  GK+V     LH  ++     L   +H +   +E     +++GIH++ Y+KDVFPN+GR +++LDPSI K KV+ +R  KR   ++ ++   V+     E G   +  V K+    LL+D+
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR---LLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDI 255
[Close]
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-13
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:  529 INDIKTGDKVIGYVADTTNFAAFVDVGVVRKGSQGKVVPVAGFLHVSEIRGAYGLENTTHAKECEVE-----VKKGIHLTAYIKDVFPNAGRLTLSLDPSITKDKVLRSRGHKR 855
            +  ++ G ++ G V   T FAAF+DV VVR+G  GK+V     LH  ++     L   +H +   +E     +++GIH++ Y+KDVFPN+GR +++LDPSI K KV+ +R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218
[Close]
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.400e-12
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:  526 WINDIKTGDKVIGYVADTTNFAAFVDVGVVRKGSQGKVVPVAGFLHVSEIRGAYGLENTTHAKECEVEVKKGIHLTAYIKDVFPNAGRLTLSLDPSITKDKVLRSRGHKRNRSIVARRERLVETKRVPEVGEVTEG 933
            W+  +KTG    G V   TNF  F++ G+VR G +G V  V G LH +++  +  +      K  +V ++KG+ +  Y+K VFP +GR +L++DP+IT+ K LR +  +R + +  R          PEV EV E 
Sbjct:  140 WLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAK-LREQRQRRKQGLKVRYSASEMKAWEPEVEEVKEA 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1074.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI1.270e-7762.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYC3_9STRA8.270e-1528.97S1 motif domain-containing protein n=1 Tax=Tribone... [more]
W7TQN5_9STRA1.290e-1434.42Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC2.300e-1339.47UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA7.400e-1234.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1074contigH-paniculata_contig1074:16454..22763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionOB-fold nucleic-acid-binding protein
Ec32 orthologEc-06_010560.1
Exons5
Model size1897
Cds size1119
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.5461152-UTR-H-paniculata_contig1074:16453..166901622928777.5461152-UTR-H-paniculata_contig1074:16453..16690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1074 16454..16690 +
1691480615.9851253-UTR-H-paniculata_contig1074:16453..166901691480615.9851253-UTR-H-paniculata_contig1074:16453..16690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1074 16454..16690 +
1622928777.6332176-UTR-H-paniculata_contig1074:22222..227631622928777.6332176-UTR-H-paniculata_contig1074:22222..22763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1074 22223..22763 +
1691480616.0464668-UTR-H-paniculata_contig1074:22222..227631691480616.0464668-UTR-H-paniculata_contig1074:22222..22763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1074 22223..22763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.5597036-CDS-H-paniculata_contig1074:16690..170831622928777.5597036-CDS-H-paniculata_contig1074:16690..17083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 16691..17083 +
1691480615.9953291-CDS-H-paniculata_contig1074:16690..170831691480615.9953291-CDS-H-paniculata_contig1074:16690..17083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 16691..17083 +
1622928777.5696578-CDS-H-paniculata_contig1074:18905..191031622928777.5696578-CDS-H-paniculata_contig1074:18905..19103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 18906..19103 +
1691480616.0045118-CDS-H-paniculata_contig1074:18905..191031691480616.0045118-CDS-H-paniculata_contig1074:18905..19103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 18906..19103 +
1622928777.5825338-CDS-H-paniculata_contig1074:20019..201361622928777.5825338-CDS-H-paniculata_contig1074:20019..20136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 20020..20136 +
1691480616.0137415-CDS-H-paniculata_contig1074:20019..201361691480616.0137415-CDS-H-paniculata_contig1074:20019..20136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 20020..20136 +
1622928777.5968957-CDS-H-paniculata_contig1074:20908..210891622928777.5968957-CDS-H-paniculata_contig1074:20908..21089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 20909..21089 +
1691480616.0224743-CDS-H-paniculata_contig1074:20908..210891691480616.0224743-CDS-H-paniculata_contig1074:20908..21089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 20909..21089 +
1622928777.6196868-CDS-H-paniculata_contig1074:21992..222221622928777.6196868-CDS-H-paniculata_contig1074:21992..22222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 21993..22222 +
1691480616.030786-CDS-H-paniculata_contig1074:21992..222221691480616.030786-CDS-H-paniculata_contig1074:21992..22222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1074 21993..22222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1074.468.1prot_H-paniculata_contig1074.468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1074 16691..22222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1074.468.1

>prot_H-paniculata_contig1074.468.1 ID=prot_H-paniculata_contig1074.468.1|Name=mRNA_H-paniculata_contig1074.468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=373bp
MTASKNAASAAYRPRWVATPVTVTLALLLLGLSMIPSHAFLASCLCRRPG
RLSRSRNGGCNPFRVVAVASQEVGGGMVNVDPSEERGVSAGPQPPRWIND
IKTGDKVIGYVADTTNFAAFVDVGVVRKGSQGKVVPVAGFLHVSEIRGAY
GLENTTHAKECEVEVKKGIHLTAYIKDVFPNAGRLTLSLDPSITKDKVLR
SRGHKRNRSIVARRERLVETKRVPEVGEVTEGYVRKVHDDFLLVDVMHAQ
LSVLRRAMISQVTGQGYVQLGDKVKAGDRLTVRIKDVVKKTVRGTENVKP
IVEFVGWGGLQSQHTSALHAVVDVGGDDSSVVAAAPVTDVNDQELEEQSD
EDSIDVEGDAEKQSDGRGVQEK*
back to top

mRNA from alignment at H-paniculata_contig1074:16454..22763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1074.468.1 ID=mRNA_H-paniculata_contig1074.468.1|Name=mRNA_H-paniculata_contig1074.468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6310bp|location=Sequence derived from alignment at H-paniculata_contig1074:16454..22763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATAATAGAAAACATGAAATTGTGCGGAGGAGACAGAGGAGGGCATTTC
AGGGAGCTGTACACAGCTACCTGTCAAGTGACGGGTGGCACAGCGGTTTT
TGGGGGGTACACGGAAGGATATCATAAATCTTGGACTCTGGTCACAAGCG
TCTTCAGCGACAAGTGAGCAAAAGAGAAACATACAGTGCAGCTAGTGTGA
AGGGAGAAAGTTCAACAACCACAATCTTATCCCAAACATGACCGCCAGCA
AGAACGCGGCCAGCGCCGCCTACCGACCTCGGTGGGTAGCTACCCCCGTC
ACAGTCACCCTCGCGTTGCTTCTTCTTGGCCTGTCCATGATCCCTTCCCA
CGCATTCTTGGCTAGTTGTCTATGTCGGCGCCCAGGAAGATTATCGCGCT
CTCGAAATGGCGGTTGCAACCCCTTTCGCGTAGTAGCCGTAGCTTCACAG
GAGGTGGGCGGGGGAATGGTCAACGTAGACCCAAGTGAAGAGCGTGGAGT
GTCTGCTGGGCCACAACCCCCCCGATGGATCAACGACATCAAGACCGGGG
ATAAGGTTATCGGCTACGTAGCAGACACTACGAATTTCGCGGCATTCGTA
GATGTTGGGGTTGTACGGAAAGGCTCGCAGGTGAGTGGGAAGTTGCAATG
CACTCTCCGTTCATGTGGTGTCATGTAGACACATGCGGGCAGGATAGCAC
GAACATACTGGAAATCATCGACTACACCGGTTAGCGCGGCAGCGAACCTC
AAGAAGACGGCGTATGGATTGGAACTTATTGAAGTGAAGTTCACCGATAC
TATCGAGTACCTCTTGTTATGTGATTAGGAGGGTACCCAGCGCCTTGTTG
TGCGAAGGAGTCGTTGGGTAACACAAGAGCTGGTATGAAGTCTTTTGGCA
GAAAGGAGACGGTTAAACCACTTTGTTCTGCATGTGGGATTTCCAAGGGT
AAATTCTAGGTCTGTGGCACATAAACGATATACCAGGTATGGTAAATCGA
GCAATGCGATACTCATCGATCGGCGGTCAAAATGATGTATAGGCGTTTAT
GACACGCCTGCTTTCGTCATTTTCCAGTAAATGTACACATGCTGCGATCA
TCATCCAATTTTTATTCTCGATTTTGTAGAGAGCTAATCTCCCCTTATAT
TTTCTGTCTCCAGGGGGCAGCCGTTTTAGCTTGCGCTGAAGCGTGCGCCT
GGCTCACTTCACTCGCACAGATGTTTAAATATCAGTGGAATCCGGTGCAC
AGCCCAGTGCAGTCGTTGCTATGGTGCTGTGCACCTGCTGTTCCCACATC
TCAACATCTGCAAGGGAACTTGACCGAACCGTGGGGGCGTAACCTACTAA
TAAACGGCCGCGACTATTTCACAACGCCGAAGGTCGACCAGCATACAAGA
AACAACCATAACGACAGTGCCCTTCCTCCCACGAGCATGAGAGGGTTTGT
TGTGTGTGGACAGCGTAACTGGTGGCGGTTCGATATTCACATCCTATCTC
AACTAAACGAGGACCTGTACCGCTACCGTTCTGTAAACTGCTTTATAGTG
ATTGTACTGACTATGCGATACATCTACAATGAGGTCCATGAATCCGCGGG
GCGGTATGTGAGCAGGGACTTCTCGTCGTCGTCCGCACACCGCTGCTGGC
CAGCCGCCAGGCAGGCAACCATGCAACTGCACCCTTATTGATGCCACCCC
CAAGATTCTTGACATGACACGATCGCACATGATTTTTACGTGTTGTCCAA
ACCGGAACCGGTTCACGGTATATTTTGTCTGATTTAAGCCAGTCGAGCCT
CTCCTACGTCACATTTGTCGTTCTTCAACCGGTTCGCGATCGATACTGTC
TGATACAAGCCAGGTCGTGCTCGGCTCTGTCAGATTTTTGCCGGTCACGT
AAGAAGTTTACTGTATAACAAGAAAGCCATAATTGGGACTCGTCTGTTGG
CGTGTCGTTAAGCGGGCAGTGCGGTCATGTTCTGCCTGCTTGAATAACCG
CACACACTGAAACACGAAAAATGGGTGGATGGGGCCTCGCAAAATCACTC
AATACTCGTGAAAAATTGGAGATGCTAGCGAAGTGTCCAGCTACTGTTGC
TAAACGAAATCTGCATGCAACTTTCAGAGAGATCGAAGATCAAATTAGAA
AACAGGGAATTTTACCAGCCCTTCTTGTTCGCCATTTTTGGGTGGAACCA
CCCCCTTGATACACGTCCTCTACGTGTACCGTCCGCTTGTTCATCAAGCC
CTTCATCGCGAAGGGGATTATGACCCGCTTGTGTCCATATCAACTAATGT
ATGTTTTTCATCATGTTGTCATGAACGTGTACAGTTGCTCCTTGCAGTGT
TCATCCCAAATGCCTCGCTGGTCAATGGAAACAATAATAATAGAATGAGT
GCTCGCGGCATCTCTCCTTCTTTTCAATGTGACTTGATGCGGAACAACAC
AGGGAAAGGTCGTTCCCGTGGCCGGGTTCTTGCACGTGTCCGAAATACGC
GGCGCCTACGGCTTGGAGAATACTACGCATGCGAAGGAATGCGAAGTGGA
GGTAAAGAAAGGCATCCATCTCACGGCGTACATCAAAGATGTGTTCCCGA
ATGCGGGGAGATTAACCCTGTCCCTGGACCCGTCCATAACAAAGGATAAG
GTGGGTTAACTGTTTAATCTGGAATGTTGTAGGCAGCTCTTTTACGTAAA
CTACATGGCCAGCAAAATCGCACGCGACTGAGGCAGCACCAGCTGTAAGT
CTCACGGTACACAGCGAAAAATAATCGGCCTGTGAAACAGCCAGTGAAAT
TCAACAGAAACTAGTGCGTGACTCAAGCAGGACTGCATGAACCAAGCCGA
AAAGCGTTTTTTTCTTTTGTCACATGCAAAAGTTACAGGTGCAATGTTGG
ACGCTAATGAGATTTCGACGTTTTTTTGTGCAGGAAATATTTCACCGCCC
GGACAAGTACGACTACGTGTTAGAGTCGCCACAGATATTACAAAGTATTC
TCGTGAGCTTCGAAATCAATGGACACATGGAATAAAGTACCCACCCCTGT
CCATTCGATTTGTGATCATCATTAGCAATCGTGGATGGTCCGGGGCACGT
AAAATGCACGAGCTCACTCTGAAACTCAGGCGAATACTTTTTCATTTTCA
TGGGTGAACATGCCAAGTATTCGTATTTGTCCGGAGGTGAATATTTCTCC
CGTAGGTGGTACGTGCTGGTAGTACCAATTGCCAAGAAGAGTGACGTGTC
TGTATTTGGAGTATGTCACTGTTTTTGTGTTTTGTCAGAGAAATTATATC
CTTTGACTGTATATCTGAGTTACACGTTGGACCGATGTGTTGAGCAAGTT
TTATACGGAGAAACTATAGCAGATGGAGCTATTTTTTAGCCCCTTGACCA
CGAAATATCTGGGAACCCCATTGCTGCACAAGCAACCGTATTTTTCAGTC
AAGAACCCAACGACGAATGTATCCATGGTTGGTTGATGATGTGGACACAA
CGAAGGACCCCCTGCGCGATAAAAGGGTTATCATTAGCACACACCATGTT
GTTCACCGCATAACAGGTATTGCGATCGCGCGGGCACAAGAGGAATCGCT
CGATAGTGGCTCGGCGAGAACGCCTCGTGGAGACGAAAAGGGTGCCCGAG
GTCGGTGAGGTCACTGAGGGGTATGTCCGAAAGGTGAGTTATTGAAGTCT
TCAACTTTAGCCTTTCCCGTCACACACTGTCAGGTTTTGCTGCTTGGGCA
ATCGGTGTGCCAATTTTGACGACCTCCAGTCCCCAAGAACTGGGCTTCTC
AAACGACTAAAATACCCACCTTGTCTCAAAATACTCGTCTATCTGAGCCC
CTGAGACGTTTATACACCTACCTGGTATTGATACTTATCTCTTTATACGA
TGATATACTAACCCCTAACATTCGTCATCTTGTGGTTGGTGTGAATTATG
CATGCATATATGACGTCCCCCATCCATCTTGGTATAGTACACAGAAATAG
CGACTGGCCATCGGTGATCTTATCAGAACAATGCTCGGAGGCCCTGCCCT
CTTCCGGATTTGTGGTCCAAGGTCTAGCAGCAAAAACAGGCTAAACATGA
TAACCCTCCACCCCTCGCTCGAATTCACGTGGTGGAAGAATGTCCCTAAC
TCTATATGAGTGAATTAGGCAAAATTGAACGATGTGATGGTGAGGCATTT
GAACCCTGGGACTGCGAAAAGAAGCCTGTAGCGGTTCTAGGAGATAAAGA
TTGGCCTGAACACCCGAGTGTTAAGGTAGAAAGGATGGGTGAGACGTTTT
TGAGCCACATGTGGCAAAGTAAGAAAGAGCGATTGGTCATCGGAAATCGT
TCTGATGGGAACTAAGCTCCGTTCTCCTGACGACGTGTGGTCACTGGTCT
AGTTACGACACGCAAAACGTGGGTCCTCTTCCTCGCCCTCGTCCCGAACT
CCCAGGTGCATGATGATTTTCTCCTCGTGGACGTGATGCACGCTCAGCTG
TCCGTATTGCGCCGCGCTATGATTAGCCAAGTGACGGGGCAGGGATATGT
TCAACTGGGCGACAAGGTCAAGGCGGGAGACCGCTTGACCGTCCGCATCA
AGGATGTGGTAAAGAAGACCGTCAGGGGAACAGAAAGTGCGTGGAGGTAC
CGATAGCGGGTTCTATCAGATTATGTCACCCCGGACATATGACAACTTCA
TTGCCAAGTTCAATTTTATCGAGAAGCAAGACTATGCCCTGTAGATTATG
CACATCTGGCTGCAGATCTCGAAGAGAGCGCTCCAAAGAGGCGAATTTAG
GGTGTCACGAGTGCCGTAGTTACGAGATGATCCAGTTGGGAGGGAAAGTG
ATGACCTGGGGTATTGAAACCATGGTGTCCCACTACCCCGTCGATTAGTT
TGCAACGCAATATTGGTGTAGTTCAGCAGCTTAAGTGGTTTCCCGTTTCG
GAAGACAAGAAGGTTTGTGTCTACAGCGTGCATGATCCTTACTGTTTTTT
GTACGAAGTGTGCTTTTTATAATGCAGTACTAACAGCACGCCTAGACTCG
TCACATTCTCTTTCTCTCGTTTTCGTTCGTGGGCGCTCTCTTTGCCGCTC
AAAACACAAGTTCCTGAGTGATTCGGGCTTCGCTTGTTTGTACAACAGGG
CGATTGACTGACTTGCGCTCACAAAATTATACCGCCATATTACAAAATCA
CGTGCTTTCCATTGGAATCTCGTATGGTCACACACTGCGTATGTACTTGG
CTAGACGACAGCAACGCTGACTTTAGGTAAAAACCTTTGAGAACCAGGAT
TGCCGAACCAGCCCTCTAGGGCTGTCTAGCAGAAAGCTATTTATTGTTAT
TTTTAGCATGTTTTCAATGTGTTGATTATTCAAGAGCGGCCATTAGGAAA
TACTAGGCATGTCATCGTGGTCGTTGCGAGGTTCGGCTGCTAAGGGATAA
TCGTCTGACGTGTTTCTTCACTTCCACCACTTGCTGTATCCCCTTCGGAA
TTCCCATCCGTTGCCCCAAAAATTGGATGGTCAAAGCAGACGTGAAGCCT
ATTGTGGAGTTCGTGGGGTGGGGGGGTCTACAGAGCCAACACACATCGGC
GTTGCACGCCGTCGTTGATGTGGGAGGTGACGATTCTTCTGTTGTCGCTG
CTGCGCCCGTGACGGATGTAAATGACCAAGAACTAGAGGAACAGTCGGAT
GAAGACTCTATAGATGTTGAGGGTGACGCAGAAAAGCAAAGCGATGGGAG
AGGGGTTCAAGAGAAATAAGAAGTGTTACGGGGAGATTTGGTCGAAGGGT
CGTATAGTTGATTCAACCACACGTGTTCTTAGCAGATGTCATTATGGTTG
TCGTTTTGTCGTTATGGTTTGGTGCTTTTGTGTCTTTCGTGATGGGGGAG
GTGATCCAGCTTCCTTTGCTCGATGTCTACATTGCGCGGATTTTTGTCGT
TTTTTAGTACAAGGTGTTGCGTTCTTTGCAGGGTGAATGCAAGTTTCTCC
TGTTTAGCCGTGTATTGTATGTAGATAGAAGAAGTAAGTGCTCGATAGTT
CGATCGGAGAATGGACACGGCCTTGACACGCATGTATACTGTAGTAAAAT
GTCTGATCGTTTCGTGGGTCTGTATCGTGTATTATTCGGAGACTACGGTG
GTTTGCTCACTGACTGTTTTTTTGGTAGCAGTGGAATAAATACTGCACAC
GTTGAACGGATCGAATTGCAACTCCTCTGGTTTTTATATTTACATATTTG
ACACTATTTGACCGAATTTTTCATGTCTGACACTAATTGGGACAAATATA
TGAATCTTCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1074:16454..22763+

>mRNA_H-paniculata_contig1074.468.1 ID=mRNA_H-paniculata_contig1074.468.1|Name=mRNA_H-paniculata_contig1074.468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at H-paniculata_contig1074:16454..22763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCCAGCAAGAACGCGGCCAGCGCCGCCTACCGACCTCGGTGGGT
AGCTACCCCCGTCACAGTCACCCTCGCGTTGCTTCTTCTTGGCCTGTCCA
TGATCCCTTCCCACGCATTCTTGGCTAGTTGTCTATGTCGGCGCCCAGGA
AGATTATCGCGCTCTCGAAATGGCGGTTGCAACCCCTTTCGCGTAGTAGC
CGTAGCTTCACAGGAGGTGGGCGGGGGAATGGTCAACGTAGACCCAAGTG
AAGAGCGTGGAGTGTCTGCTGGGCCACAACCCCCCCGATGGATCAACGAC
ATCAAGACCGGGGATAAGGTTATCGGCTACGTAGCAGACACTACGAATTT
CGCGGCATTCGTAGATGTTGGGGTTGTACGGAAAGGCTCGCAGATGACCG
CCAGCAAGAACGCGGCCAGCGCCGCCTACCGACCTCGGTGGGTAGCTACC
CCCGTCACAGTCACCCTCGCGTTGCTTCTTCTTGGCCTGTCCATGATCCC
TTCCCACGCATTCTTGGCTAGTTGTCTATGTCGGCGCCCAGGAAGATTAT
CGCGCTCTCGAAATGGCGGTTGCAACCCCTTTCGCGTAGTAGCCGTAGCT
TCACAGGAGGTGGGCGGGGGAATGGTCAACGTAGACCCAAGTGAAGAGCG
TGGAGTGTCTGCTGGGCCACAACCCCCCCGATGGATCAACGACATCAAGA
CCGGGGATAAGGTTATCGGCTACGTAGCAGACACTACGAATTTCGCGGCA
TTCGTAGATGTTGGGGTTGTACGGAAAGGCTCGCAGGGAAAGGTCGTTCC
CGTGGCCGGGTTCTTGCACGTGTCCGAAATACGCGGCGCCTACGGCTTGG
AGAATACTACGCATGCGAAGGAATGCGAAGTGGAGGTAAAGAAAGGCATC
CATCTCACGGCGTACATCAAAGATGTGTTCCCGAATGCGGGGAGATTAAC
CCTGTCCCTGGACCCGTCCATAACAAAGGATAAGGGAAAGGTCGTTCCCG
TGGCCGGGTTCTTGCACGTGTCCGAAATACGCGGCGCCTACGGCTTGGAG
AATACTACGCATGCGAAGGAATGCGAAGTGGAGGTAAAGAAAGGCATCCA
TCTCACGGCGTACATCAAAGATGTGTTCCCGAATGCGGGGAGATTAACCC
TGTCCCTGGACCCGTCCATAACAAAGGATAAGGTATTGCGATCGCGCGGG
CACAAGAGGAATCGCTCGATAGTGGCTCGGCGAGAACGCCTCGTGGAGAC
GAAAAGGGTGCCCGAGGTCGGTGAGGTCACTGAGGGGTATGTCCGAAAGG
TATTGCGATCGCGCGGGCACAAGAGGAATCGCTCGATAGTGGCTCGGCGA
GAACGCCTCGTGGAGACGAAAAGGGTGCCCGAGGTCGGTGAGGTCACTGA
GGGGTATGTCCGAAAGGTGCATGATGATTTTCTCCTCGTGGACGTGATGC
ACGCTCAGCTGTCCGTATTGCGCCGCGCTATGATTAGCCAAGTGACGGGG
CAGGGATATGTTCAACTGGGCGACAAGGTCAAGGCGGGAGACCGCTTGAC
CGTCCGCATCAAGGATGTGGTAAAGAAGACCGTCAGGGGAACAGAAAGTG
CATGATGATTTTCTCCTCGTGGACGTGATGCACGCTCAGCTGTCCGTATT
GCGCCGCGCTATGATTAGCCAAGTGACGGGGCAGGGATATGTTCAACTGG
GCGACAAGGTCAAGGCGGGAGACCGCTTGACCGTCCGCATCAAGGATGTG
GTAAAGAAGACCGTCAGGGGAACAGAAAACGTGAAGCCTATTGTGGAGTT
CGTGGGGTGGGGGGGTCTACAGAGCCAACACACATCGGCGTTGCACGCCG
TCGTTGATGTGGGAGGTGACGATTCTTCTGTTGTCGCTGCTGCGCCCGTG
ACGGATGTAAATGACCAAGAACTAGAGGAACAGTCGGATGAAGACTCTAT
AGATGTTGAGGGTGACGCAGAAAAGCAAAGCGATGGGAGAGGGGTTCAAG
AGAAATAAACGTGAAGCCTATTGTGGAGTTCGTGGGGTGGGGGGGTCTAC
AGAGCCAACACACATCGGCGTTGCACGCCGTCGTTGATGTGGGAGGTGAC
GATTCTTCTGTTGTCGCTGCTGCGCCCGTGACGGATGTAAATGACCAAGA
ACTAGAGGAACAGTCGGATGAAGACTCTATAGATGTTGAGGGTGACGCAG
AAAAGCAAAGCGATGGGAGAGGGGTTCAAGAGAAATAA
back to top