mRNA_H-paniculata_contig10739.467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10739.467.1
Unique NamemRNA_H-paniculata_contig10739.467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 253 bits (645), Expect = 3.120e-84
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:   77 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 252 bits (644), Expect = 3.630e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 2 
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.660e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 2 
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A3S2NPX2_ORYJA (Histone domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2NPX2_ORYJA)

HSP 1 Score: 251 bits (642), Expect = 2.300e-83
Identity = 140/162 (86.42%), Postives = 146/162 (90.12%), Query Frame = 2 
Query:    2 NPPSNTT*SHLISLRSSNCPA*SFSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            NPPS T   H ++ R  N      + MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   15 NPPSETV-LHFLANREQN-----RTVMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 170
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 249 bits (636), Expect = 6.640e-83
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 2 
Query:   74 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: UPI0015C3C017 (LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0015C3C017)

HSP 1 Score: 251 bits (641), Expect = 7.090e-83
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 2 
Query:   68 SFSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            S STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   54 SLSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 193
[Close]
BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A1I7S5W3_BURXY (Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S5W3_BURXY)

HSP 1 Score: 250 bits (638), Expect = 9.050e-83
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 2 
Query:   68 SFSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            S +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   30 SSATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169
[Close]
BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A0C9RCG0_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A0C9RCG0_9HYME)

HSP 1 Score: 249 bits (635), Expect = 1.120e-82
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 2 
Query:   71 FSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            F  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    6 FDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 144
[Close]
BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 249 bits (635), Expect = 1.150e-82
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 2 
Query:   71 FSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            F  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 FDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145
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BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 248 bits (634), Expect = 1.210e-82
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 487
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10739.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK3.120e-8499.27Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA3.630e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S1BJN3_9STRA1.660e-8399.26Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A3S2NPX2_ORYJA2.300e-8386.42Histone domain-containing protein n=1 Tax=Oryzias ... [more]
F7BPK5_MONDO6.640e-8396.38Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B... [more]
UPI0015C3C0177.090e-8396.43LOW QUALITY PROTEIN: histone H3 isoform X2 n=1 Tax... [more]
A0A1I7S5W3_BURXY9.050e-8396.43Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxI... [more]
A0A0C9RCG0_9HYME1.120e-8295.68Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
A0A0C9RWZ2_9HYME1.150e-8295.68Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=... [more]
A7RJG4_NEMVE1.210e-8297.79Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10739contigH-paniculata_contig10739:6038..6527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue5.3e-66
Seed eggNOG ortholog112098.XP_008614757.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size490
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.392746-UTR-H-paniculata_contig10739:6037..61161622928777.392746-UTR-H-paniculata_contig10739:6037..6116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10739 6038..6116 +
1691480615.9292486-UTR-H-paniculata_contig10739:6037..61161691480615.9292486-UTR-H-paniculata_contig10739:6037..6116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10739 6038..6116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.4056995-CDS-H-paniculata_contig10739:6116..65271622928777.4056995-CDS-H-paniculata_contig10739:6116..6527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10739 6117..6527 +
1691480615.9386964-CDS-H-paniculata_contig10739:6116..65271691480615.9386964-CDS-H-paniculata_contig10739:6116..6527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10739 6117..6527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10739.467.1prot_H-paniculata_contig10739.467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10739 6117..6527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10739.467.1

>prot_H-paniculata_contig10739.467.1 ID=prot_H-paniculata_contig10739.467.1|Name=mRNA_H-paniculata_contig10739.467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-paniculata_contig10739:6038..6527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10739.467.1 ID=mRNA_H-paniculata_contig10739.467.1|Name=mRNA_H-paniculata_contig10739.467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig10739:6038..6527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACCCTCCTTCGAACACAACATAGTCTCACCTTATCTCACTTCGAAGTT
CAAACTGTCCTGCCTGATCTTTCTCTACCATGGCTCGTACCAAGCAGACC
GCCCGTAAGTCCACCGGAGGAAAAGCCCCCCGCAAGCAGCTCGCCACCAA
GGCTGCGCGTAAGTCCGCCCCTGCTACTGGTGGCGTGAAGAAGCCCCACC
GATACAGACCTGGGACTGTGGCCTTGCGTGAGATCAGGCGCTACCAGAAG
TCGACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTTGTGCGCGA
GATCGCCCAGGACTTCAAGACGGACCTCCGCTTCCAGGGGTCGGCTGTGC
TTGCCCTACAGGAGGCCGCTGAGGCATACCTGGTGGGTCTGTTCGAGGAC
ACGAACTTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGA
CATCCAGCTGGCCCGGCGCATCCGCGGGGAACGCTCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10739:6038..6527+

>mRNA_H-paniculata_contig10739.467.1 ID=mRNA_H-paniculata_contig10739.467.1|Name=mRNA_H-paniculata_contig10739.467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig10739:6038..6527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGTACCAAGCAGACCGCCCGTAAGTCCACCGGAGGAAAAGCCCC
CCGCAAGCAGCTCGCCACCAAGGCTGCGCGTAAGTCCGCCCCTGCTACTG
GTGGCGTGAAGAAGCCCCACCGATACAGACCTGGGACTGTGGCCTTGCGT
GAGATCAGGCGCTACCAGAAGTCGACCGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGACTTCAAGACGGACCTCC
GCTTCCAGGGGTCGGCTGTGCTTGCCCTACAGGAGGCCGCTGAGGCATAC
CTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCACGCCAAGCG
TGTCACCATCATGCCCAAGGACATCCAGCTGGCCCGGCGCATCCGCGGGG
AACGCTCGTAGATGGCTCGTACCAAGCAGACCGCCCGTAAGTCCACCGGA
GGAAAAGCCCCCCGCAAGCAGCTCGCCACCAAGGCTGCGCGTAAGTCCGC
CCCTGCTACTGGTGGCGTGAAGAAGCCCCACCGATACAGACCTGGGACTG
TGGCCTTGCGTGAGATCAGGCGCTACCAGAAGTCGACCGAGCTGCTCATC
CGCAAGCTCCCCTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGACTTCAA
GACGGACCTCCGCTTCCAGGGGTCGGCTGTGCTTGCCCTACAGGAGGCCG
CTGAGGCATACCTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATC
CACGCCAAGCGTGTCACCATCATGCCCAAGGACATCCAGCTGGCCCGGCG
CATCCGCGGGGAACGCTCGTAG
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