mRNA_H-paniculata_contig10736.465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10736.465.1
Unique NamemRNA_H-paniculata_contig10736.465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A6H5JNU4_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU4_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 2.540e-113
Identity = 172/227 (75.77%), Postives = 193/227 (85.02%), Query Frame = 1
Query:   22 QVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDRGRIVVDKRLRVPGLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLA-DDILPFEYRYLGSMAQVGDWKAVADLTGV---GGSK-GGPVVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            +VSV L+EASD IMG+FDEKL++YTTRLLENRKV+VLLN SV SV    CTL DGRKLPFGLMVWSTGLAP E+V  MEGV+K+RGRI +D RLRVPG++GVFA+GDAA   E PLGPLAQVADQQGKYLA  FSK   +   D+ PF YR+LGSMAQVGDWKA+ADL GV   GGS+ GGPV+DGFLAF+TWRSAYWTKTVS+ANK LIPMHWFKAWAFGRDISRF
Sbjct:  212 KVSVHLVEASDRIMGSFDEKLISYTTRLLENRKVEVLLNTSVASVGPTECTLDDGRKLPFGLMVWSTGLAPTELVSSMEGVEKERGRIKIDGRLRVPGMDGVFALGDAAANPENPLGPLAQVADQQGKYLAKCFSKSSDVGHSDMPPFYYRHLGSMAQVGDWKAIADLKGVRGGGGSEAGGPVLDGFLAFVTWRSAYWTKTVSVANKVLIPMHWFKAWAFGRDISRF 438          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: W7TS83_9STRA (Pyridine nucleotide-disulfide oxidoreductase, NAD-binding domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS83_9STRA)

HSP 1 Score: 214 bits (546), Expect = 9.080e-67
Identity = 121/232 (52.16%), Postives = 152/232 (65.52%), Query Frame = 1
Query:   25 VSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGV--KKDRGRIVVDKRLRVPGLE--GVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDP--LADDILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGP-----VVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            VSV+LIEASDHI+G+FD +LV Y  R+ + R V+VL + SV+ VE +   L DG  L FGL VWSTG+    +VQ +     K   GR++VD RLR+ G +  GVFA+GD AI   RPL  LAQVA QQ KYL    +K     +  ++ PFEYR+LGSMAQ+G WK V D   +   KG       V+ G+ AFL WR+AYWTK+VS ANK LIPM+W K+W FGRDISRF
Sbjct:    2 VSVTLIEASDHILGSFDRRLVDYVGRVFQERHVRVLTDTSVEKVEPNVAWLKDGTPLHFGLCVWSTGVKATPLVQALPPSLSKGPGGRLLVDGRLRLQGHDQKGVFAVGDCAISETRPLPCLAQVAQQQAKYLGGVLNKYSEPHVNKEVPPFEYRHLGSMAQLGMWKGVVDSAKLDDKKGDEDGKKSVLTGWTAFLLWRAAYWTKSVSWANKILIPMYWLKSWIFGRDISRF 233          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A4D9D916_9STRA (Pyr_redox_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D916_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.220e-63
Identity = 121/232 (52.16%), Postives = 152/232 (65.52%), Query Frame = 1
Query:   25 VSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGV--KKDRGRIVVDKRLRVPGLE--GVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDP--LADDILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGP-----VVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            VSV+LIEASDHI+G+FD +LV Y  R+ + R V+VL + SV+ VE +   L DG  L FGL VWSTG+    +VQ +     K   GR+++D RLR+ G E  GVFA+GD AI   RPL  LAQVA QQ KYL    +K     +  ++ PFEYR+LGSMAQ+G WK V D   +   KG       V+ G+ AFL WR+AYWTK+VS ANK LIPM+W K+W FGRDISRF
Sbjct:  275 VSVTLIEASDHILGSFDRQLVDYVGRVFQERHVRVLTDTSVEKVEPNVAWLKDGTPLHFGLCVWSTGVKATPLVQALPPSFPKGPGGRLLIDGRLRLYGHEQKGVFAVGDCAISETRPLPCLAQVAQQQAKYLGGVLNKYSEPHVNKEVPPFEYRHLGSMAQLGMWKGVVDSAKLDDKKGDQDGKKSVLTGWTAFLLWRAAYWTKSVSWANKILIPMYWLKSWIFGRDISRF 506          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: D8LNJ3_ECTSI (NADH dehydrogenase (Ubiquinone) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ3_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.550e-62
Identity = 104/136 (76.47%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   22 QVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDRGRIVVDKRLRVPGLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSK 429
            +VSV L+EASDHIMG+FDEKL++YTTRLLENRKV+VLLN SV SV    CTL DGRKLPFGL+VWSTGLAP E+V  MEGV+K+RGRI +D RLRVPG++GVFAMGDAA   E PLGPLAQVADQQGKYLA  FSK
Sbjct:  211 KVSVHLVEASDHIMGSFDEKLISYTTRLLENRKVEVLLNTSVASVGPTECTLGDGRKLPFGLIVWSTGLAPTELVSSMEGVEKERGRINIDGRLRVPGMDGVFAMGDAAANPENPLGPLAQVADQQGKYLAKCFSK 346          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: K8YWV3_NANGC (NADH dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWV3_NANGC)

HSP 1 Score: 190 bits (483), Expect = 3.320e-55
Identity = 114/232 (49.14%), Postives = 140/232 (60.34%), Query Frame = 1
Query:   25 VSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGV--KKDRGRIVVDKRLRVPGLE--GVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDP--LADDILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGP-----VVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            VSV+LIEASDHI+G+FD +LV Y                    VE +   L DG  L FGL VWSTG+    +VQ +     K   GR++VD RLR+ G +  GVFA+GD AI   RPL  LAQVA QQ KYL    +K     +  ++ PFEYR+LGSMAQ+G WK V D   +   KG       V+ G+ AFL WR+AYWTK+VS ANK LIPM+W K+W FGRDISRF
Sbjct:  192 VSVTLIEASDHILGSFDRRLVDY--------------------VEPNVAWLKDGTPLHFGLCVWSTGVKATPLVQALPPSFPKGPGGRLLVDGRLRLQGHDQKGVFAVGDCAISETRPLPCLAQVAQQQAKYLGGVLNKYSEPHVNKEVPPFEYRHLGSMAQLGMWKGVVDSAKLDDKKGDEDGKKSVLTGWTAFLLWRAAYWTKSVSWANKILIPMYWLKSWIFGRDISRF 403          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A410JA44_9CILI (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Philasterides dicentrarchi TaxID=282688 RepID=A0A410JA44_9CILI)

HSP 1 Score: 191 bits (485), Expect = 5.960e-55
Identity = 106/242 (43.80%), Postives = 150/242 (61.98%), Query Frame = 1
Query:   25 VSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHD----------FCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDR-GRIVVDKRLRVP------GLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLADDILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGG----PVVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            V V LIEA   ++G+FD+ L  Y  +L + R + V   +SV+ +  +          F  L++G K+ FG++VWS GL  +++V+ ++G+KK + GRI V+++L+V        LE VFA+GD A  S++PL  +AQ A QQGK++A + +K   L  D + FE   LGSMA +G  K V D T VG   G     P + GFLAFL WR+ YW K VS++NK LIPMHWFK++ FGRDISRF
Sbjct:  219 VQVHLIEAGPDLLGSFDQSLKNYVQKLFKKRYINVKTGVSVKGLSEEQIPGHHSKDTFAELSNGTKIQFGMLVWSAGLQSIKLVKALDGIKKGKTGRIEVNEQLKVQLIGESGHLENVFALGDCAANSQQPLPQIAQAAQQQGKFVANYINKN--LKSDEVKFELFNLGSMASIGQLKGVYDGTHVGNPYGKEYKIPKISGFLAFLVWRTGYWGKQVSLSNKILIPMHWFKSYIFGRDISRF 458          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A7S3YYD9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYD9_9EUKA)

HSP 1 Score: 191 bits (486), Expect = 6.390e-55
Identity = 101/243 (41.56%), Postives = 140/243 (57.61%), Query Frame = 1
Query:   16 RGQVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDF----------CTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDRGRIVVDKRLRVPGLEG-VFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLADDIL-----PFEYRYLGSMAQVGDWKAVADLTGVGGSK---GGPVVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            +  + ++L+EA   ++G+F + L  Y    L+ R + + LN +V++VE                 DG  LPFGLMVWS GL  V+ +  +       GR+ VD  L++PG EG +FA+GD A+ +  PL PLA+VA Q G YLA   +  +P   + L      F +   GSMAQ+G WK V D T VG  +    GP + GF A++TWRSAYW + VS+ NK LIPMHWF++W FGRDI RF
Sbjct:  235 KNDIRITLVEAGGGLLGSFSQSLATYVQGSLQKRNIDIRLNTAVKAVESISDDPKNSSAVQAIFQDGSVLPFGLMVWSAGLKQVKFIDSLSFEHGPTGRLTVDDYLQIPGHEGRIFALGDCAVNTTAPLAPLAKVAQQHGAYLAKHMNAQNPKNKEPLGTPDKAFSFFNPGSMAQIGGWKGVLDFTHVGSGEKQLSGPTITGFAAWVTWRSAYWGRQVSLRNKILIPMHWFQSWVFGRDICRF 477          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A835ZFC4_9STRA (Pyridine nucleotide-disulfide oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC4_9STRA)

HSP 1 Score: 185 bits (470), Expect = 3.210e-53
Identity = 100/197 (50.76%), Postives = 132/197 (67.01%), Query Frame = 1
Query:   22 QVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDRGRIVVDKRLRVPGLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLADDILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGPVVDGFLAFLTWRSAYWTKTV 612
            +VSV+L+EAS  I+G FD  LV YT  L + R V +L + SV  V+     L DG  +P+GL+VWSTG+ PV+   ++E ++K RGRI VD+RLRVP LEGV+AMGD A   ++ L PLAQVADQQG+YLA   ++         PF+Y +LGSMAQVGD++A+ D  G     G   ++G LA+  WRSAYWTKTV
Sbjct:  217 KVSVTLVEASHQILGTFDSALVKYTMNLFQKRHVNILTDNSVVGVKDHKVLLADGNSIPYGLVVWSTGIKPVDFTAKLE-IEKVRGRITVDERLRVPALEGVYAMGDCAAGKDKALAPLAQVADQQGRYLAAALNRGHEE-----PFKYVHLGSMAQVGDYQAIVDWHGTRVKHGS--LNGLLAWAIWRSAYWTKTV 405          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A6U2FK17_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2FK17_HEMAN)

HSP 1 Score: 184 bits (466), Expect = 9.000e-52
Identity = 106/248 (42.74%), Postives = 144/248 (58.06%), Query Frame = 1
Query:   16 RGQVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQSVE--------------HDFCT---LTDGRKLPFGLMVWSTGLAPVEVVQRM--EGVKKDRGRIVVDKRLRVPGLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLADDI-LPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGPV----VDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            +G   V+L+EA  H++G F+  L  Y  +L ++R V +   +SV SVE              H   T   L DG ++PFG MVWS GLAPV++V  +  +  K   GRI +D   R+ G   VFA+GD A+  + PL P+AQ A QQG Y+A   +K D + D+    F   ++GS+A +G WK V D+T VG  +G  V    + G  +F  +R+AYW K VS ANK LIPMHWFKA+ FGRDISRF
Sbjct:  253 QGHFKVTLVEAGPHLLGPFEASLREYVEKLFKSRNVDLRTGVSVTSVEIEDLDPAELVADSQHRHITTAVLKDGSRIPFGTMVWSAGLAPVKLVDNITPDVRKGPGGRIHIDDYCRIHGFRDVFALGDCAVCDKHPLPPIAQAAQQQGYYVAKLLNKHDGVPDEGGRGFRLFHMGSLASIGGWKGVMDMTKVGDPQGQQVKVGKLSGIASFAIYRAAYWGKQVSWANKILIPMHWFKAFCFGRDISRF 500          
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Match: A0A7S3GUF6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUF6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.460e-51
Identity = 104/231 (45.02%), Postives = 137/231 (59.31%), Query Frame = 1
Query:  109 ENRKVQVLLNISVQSVEH-DFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEG-VKKDRG-RIVVDKRLRV---PGLEG-----------VFAMGDAAIESERPLGPLAQVADQQGKYLA-TWFSKMDPLADDIL--------------------PFEYRYLGSMAQVGDWKAVADLTGVGGSKGGPVVDGFLAFLTWRSAYWTKTVSIANKALIPMHWFKAWAFGRDISRF 687
            E+R ++V LN +V++++      L DG +LPFGLMVWSTG+  V +++ ++    K RG R+++D +LR+   P  +G           V+AMGD A +S +PL  LAQVA QQ  YLA T     D  A+  L                    PF+Y +LGSMA VGDWK V D + +  S  GP V GFLAFL WR+AYWTK VSI NK +IPM+WFK+  FGRDISRF
Sbjct:    2 ESRSIKVRLNTTVKAIKDGSVAVLGDGTELPFGLMVWSTGVKQVSLIRALDAEFSKGRGGRLLMDDKLRLLAGPDAQGGKPGEPLGEGTVYAMGDCACDSVKPLPALAQVAAQQAIYLAKTMNQNSDLFAEAALSTRNGEEPQSVVHKGLAQVKPFQYAHLGSMASVGDWKGVVDTSNISQSMDGPPVKGFLAFLLWRAAYWTKQVSIVNKIMIPMYWFKSTVFGRDISRF 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10736.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNU4_9PHAE2.540e-11375.77Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
W7TS83_9STRA9.080e-6752.16Pyridine nucleotide-disulfide oxidoreductase, NAD-... [more]
A0A4D9D916_9STRA2.220e-6352.16Pyr_redox_2 domain-containing protein n=1 Tax=Nann... [more]
D8LNJ3_ECTSI1.550e-6276.47NADH dehydrogenase (Ubiquinone) (Partial) (Fragmen... [more]
K8YWV3_NANGC3.320e-5549.14NADH dehydrogenase n=1 Tax=Nannochloropsis gaditan... [more]
A0A410JA44_9CILI5.960e-5543.80Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
A0A7S3YYD9_9EUKA6.390e-5541.56Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A835ZFC4_9STRA3.210e-5350.76Pyridine nucleotide-disulfide oxidoreductase-domai... [more]
A0A6U2FK17_HEMAN9.000e-5242.74Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S3GUF6_9STRA6.460e-5145.02Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10736contigH-paniculata_contig10736:1398..3258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog227086.JGI_V11_34172
Preferred nameNDA1
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0003959,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005777,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031304,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0098573,GO:0104004
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
EC1.6.5.9,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size690
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10736.465.1prot_H-paniculata_contig10736.465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10736 1398..3258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.1316476-CDS-H-paniculata_contig10736:1397..14731622928777.1316476-CDS-H-paniculata_contig10736:1397..1473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 1398..1473 -
1691480615.8330467-CDS-H-paniculata_contig10736:1397..14731691480615.8330467-CDS-H-paniculata_contig10736:1397..1473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 1398..1473 -
1622928777.1433372-CDS-H-paniculata_contig10736:1854..20631622928777.1433372-CDS-H-paniculata_contig10736:1854..2063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 1855..2063 -
1691480615.8425548-CDS-H-paniculata_contig10736:1854..20631691480615.8425548-CDS-H-paniculata_contig10736:1854..2063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 1855..2063 -
1622928777.153078-CDS-H-paniculata_contig10736:2399..26841622928777.153078-CDS-H-paniculata_contig10736:2399..2684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 2400..2684 -
1691480615.8499057-CDS-H-paniculata_contig10736:2399..26841691480615.8499057-CDS-H-paniculata_contig10736:2399..2684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 2400..2684 -
1622928777.1626923-CDS-H-paniculata_contig10736:3138..32581622928777.1626923-CDS-H-paniculata_contig10736:3138..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 3139..3258 -
1691480615.8572428-CDS-H-paniculata_contig10736:3138..32581691480615.8572428-CDS-H-paniculata_contig10736:3138..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10736 3139..3258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10736.465.1

>prot_H-paniculata_contig10736.465.1 ID=prot_H-paniculata_contig10736.465.1|Name=mRNA_H-paniculata_contig10736.465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MAATARGQVSVSLIEASDHIMGAFDEKLVAYTTRLLENRKVQVLLNISVQ
SVEHDFCTLTDGRKLPFGLMVWSTGLAPVEVVQRMEGVKKDRGRIVVDKR
LRVPGLEGVFAMGDAAIESERPLGPLAQVADQQGKYLATWFSKMDPLADD
ILPFEYRYLGSMAQVGDWKAVADLTGVGGSKGGPVVDGFLAFLTWRSAYW
TKTVSIANKALIPMHWFKAWAFGRDISRF*
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mRNA from alignment at H-paniculata_contig10736:1398..3258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10736.465.1 ID=mRNA_H-paniculata_contig10736.465.1|Name=mRNA_H-paniculata_contig10736.465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1861bp|location=Sequence derived from alignment at H-paniculata_contig10736:1398..3258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTACGGCGCGTGGACAGGTCTCCGTAAGCCTGATCGAAGCGAG CGATCACATCATGGGCGCGTTCGACGAGAAGCTTGTCGCCTACACGACGC GTCTCTTGGAAAACCGCAAGGTCGGTACATCATGAACTGCTTGCCTCTCC ATTGTTTCCTCAATTCAGCCACATTGTACCCTGAGTATCTCTCACACGAA GGAGGACGTAGTGGTTTCGGTCATCGTCGCCGATGCAAAATGTTCCTGCA GAAAAATAATGTTCAAACCATTCCTAAAGGCATTGAACCGCACTACACTT CAAGGTCTATATTTGCAGGCTGGCGCATTTTCGCTTCGACCACCTCTCAA GAACACGTAAAGAGGATATTGGCAGCAATGCAAGTCAATGGTCACGTTGT TCGCTCGTTCATCAATTGAAAGTTAGCAAGTATAACGGTATCCATGGCTC ATGAGCTCCAGGTGTATTTTTTCTCTACGGTGTCCCATTTTCGCCTGTAT AGACAATGGATCCATCATCCAACAGCGAGACCCCTCACCCCAACAACGAA TTTTCCCCAAAAACAAACAAATAGGTACAAGTACTGCTCAACATCTCCGT GCAGTCCGTGGAGCATGACTTCTGCACGCTGACCGATGGCCGCAAGCTGC CCTTCGGCCTCATGGTGTGGTCCACGGGACTTGCTCCGGTAGAAGTTGTT CAACGGATGGAGGGGGTTAAGAAAGACAGAGGAAGAATTGTAGTGGACAA ACGGTTAAGGGTGCCGGGGTTGGAAGGCGTGTTTGCCATGGGAGACGCTG CGATCGAATCCGAGCGGCCGTTGGGGCCGCTCGCTCAGGTGGCCGATCAG CAGGGGAAGGTGAATGGAGTACTTTGTACAAGCAGTCGCCATGTACAGCG CAGCATCGACCACGATATTCAAATATTTTGTTTTGGCGACTCCAACTGTA GTTCCTTGGAAATCAAGAAGTGTTATCATGGATGGTGTCCCACTTGTTCT TCATGGAACAGATTTCGGCCATTCGGAACGGATCTTACGGTGGCCATCGT AATTTCGCATCGCCTGCCATTCATGTGCCACGGCGCAGGTGTTGGGTGAG TTTTTCTTGCCAATGAAAACGCGAAAGTCGACAAGACTCCCCCCGCCACT CTGTGTTCTTTGCCCGACCACCACTCCAAAAAAATACGCTTTCAGTATTT GGCGACGTGGTTCTCGAAGATGGACCCCCTCGCTGACGATATCCTCCCAT TCGAGTATCGCTATTTGGGCAGCATGGCGCAAGTTGGGGACTGGAAAGCG GTCGCTGATCTTACGGGGGTGGGAGGTTCTAAAGGTGGGCCAGTCGTCGA TGGATTCCTCGCTTTCTTGACGTGGAGAAGCGCATACTGGACCAAAACTG TCAGGTAAGCGATGCTTCTCTCTAGTAACATACAGGGACTCACGGTGGAT TGGGTGCGTTGTTGTAATGGTTTCTGTGGATGCTTCAGGCGTCGCCAACA TGGGTGTCAATCGGTGAGGTTCGGTTGTGGGTTTTCGTGTGTTGGAGTGA TGCTCTCCTTTGGGGTGCTCGGACTGATGGACGGGGCGATAACGAGGATA GAATCGCGGAGATTTATTCTCCACACGGTAGCATACGTTTGTGATCGAAG GAAAGGCATCGCGGGGATTGTTACAGTTTTGCTCATGGCCTGCAGTCTGC TAATTTGTCGGAGATACCTATTTTGCAAGTACTGACCTTTTCATCACTTT TACTATTTCCTTGTTGCTGTTCTTTTACTTATCAGCATCGCCAACAAAGC ACTGATTCCGATGCACTGGTTCAAGGCATGGGCGTTCGGACGAGACATCA GCCGCTTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10736:1398..3258-

>mRNA_H-paniculata_contig10736.465.1 ID=mRNA_H-paniculata_contig10736.465.1|Name=mRNA_H-paniculata_contig10736.465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig10736:1398..3258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTACGGCGCGTGGACAGGTCTCCGTAAGCCTGATCGAAGCGAG
CGATCACATCATGGGCGCGTTCGACGAGAAGCTTGTCGCCTACACGACGC
GTCTCTTGGAAAACCGCAAGATGGCTGCTACGGCGCGTGGACAGGTCTCC
GTAAGCCTGATCGAAGCGAGCGATCACATCATGGGCGCGTTCGACGAGAA
GCTTGTCGCCTACACGACGCGTCTCTTGGAAAACCGCAAGGTACAAGTAC
TGCTCAACATCTCCGTGCAGTCCGTGGAGCATGACTTCTGCACGCTGACC
GATGGCCGCAAGCTGCCCTTCGGCCTCATGGTGTGGTCCACGGGACTTGC
TCCGGTAGAAGTTGTTCAACGGATGGAGGGGGTTAAGAAAGACAGAGGAA
GAATTGTAGTGGACAAACGGTTAAGGGTGCCGGGGTTGGAAGGCGTGTTT
GCCATGGGAGACGCTGCGATCGAATCCGAGCGGCCGTTGGGGCCGCTCGC
TCAGGTGGCCGATCAGCAGGGGAAGGTACAAGTACTGCTCAACATCTCCG
TGCAGTCCGTGGAGCATGACTTCTGCACGCTGACCGATGGCCGCAAGCTG
CCCTTCGGCCTCATGGTGTGGTCCACGGGACTTGCTCCGGTAGAAGTTGT
TCAACGGATGGAGGGGGTTAAGAAAGACAGAGGAAGAATTGTAGTGGACA
AACGGTTAAGGGTGCCGGGGTTGGAAGGCGTGTTTGCCATGGGAGACGCT
GCGATCGAATCCGAGCGGCCGTTGGGGCCGCTCGCTCAGGTGGCCGATCA
GCAGGGGAAGTATTTGGCGACGTGGTTCTCGAAGATGGACCCCCTCGCTG
ACGATATCCTCCCATTCGAGTATCGCTATTTGGGCAGCATGGCGCAAGTT
GGGGACTGGAAAGCGGTCGCTGATCTTACGGGGGTGGGAGGTTCTAAAGG
TGGGCCAGTCGTCGATGGATTCCTCGCTTTCTTGACGTGGAGAAGCGCAT
ACTGGACCAAAACTGTCAGTATTTGGCGACGTGGTTCTCGAAGATGGACC
CCCTCGCTGACGATATCCTCCCATTCGAGTATCGCTATTTGGGCAGCATG
GCGCAAGTTGGGGACTGGAAAGCGGTCGCTGATCTTACGGGGGTGGGAGG
TTCTAAAGGTGGGCCAGTCGTCGATGGATTCCTCGCTTTCTTGACGTGGA
GAAGCGCATACTGGACCAAAACTGTCAGCATCGCCAACAAAGCACTGATT
CCGATGCACTGGTTCAAGGCATGGGCGTTCGGACGAGACATCAGCCGCTT
CTGACATCGCCAACAAAGCACTGATTCCGATGCACTGGTTCAAGGCATGG
GCGTTCGGACGAGACATCAGCCGCTTCTGA
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