mRNA_H-paniculata_contig1072.458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1072.458.1
Unique NamemRNA_H-paniculata_contig1072.458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: D8LFV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV3_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.310e-46
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            KE+FGL+  YNAMSPL+L+KGYT+++LD K+      R     +  L  + NDFVVVEGTGHTGVGS+VG+NNADVA  LGLD+LLV NGGLGSTYDV+ALN+ LC   GVRVRAVLLNKVK  K DMVR
Sbjct:   83 KEYFGLSAPYNAMSPLVLYKGYTKDFLDGKMDVREQKRVIQDGFEELIRS-NDFVVVEGTGHTGVGSVVGMNNADVAGLLGLDVLLVGNGGLGSTYDVMALNKTLCTAGGVRVRAVLLNKVKRGKEDMVR 211          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A6H5JE31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE31_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 7.290e-45
Identity = 84/130 (64.62%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            +E+FGL+  YNAMSPL+L+KGYT+++LD K+      R     +  L  + NDFVVVEGTGHTGVGS+VG+NNA+VA  LGLD+LLV NGGLGSTYDV+ALN+ LC   GVRVRAVLLNKVK  K DMVR
Sbjct:  121 REYFGLSAPYNAMSPLVLYKGYTKDFLDGKMDVREQKRVIQDGFEELIRS-NDFVVVEGTGHTGVGSVVGMNNANVAGLLGLDVLLVGNGGLGSTYDVMALNKTLCTAGGVRVRAVLLNKVKRGKEDMVR 249          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A2R5G5J3_9STRA (Phosphate acetyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5J3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.110e-37
Identity = 72/130 (55.38%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 KEHFGLTN-SYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMV 387
            KEHF LT+  Y  MSP+++  GYTR++LD K+            Y ++ EA N+FVVVEGTGH GVGSIV ++NA VAS LGLDI+ V NGGLGS +D LALN+ +C   GV++R VL+NKVK DK+DM+
Sbjct:   88 KEHFNLTSCEYREMSPVVIPNGYTRDFLDGKIKEDDQIHAIKESYASI-EAKNEFVVVEGTGHCGVGSIVNMDNARVASLLGLDIIFVVNGGLGSAFDELALNRLMCEHHGVKIRGVLVNKVKPDKLDMI 216          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A836C8E0_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.940e-36
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDF------VVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            +EH+GLT +Y  MSPL+L KGYTR YLD +V         ++++ A+ +A+++       V+VEGTGHTGVGSIVG NNADVA+ LG+ ++LVANGGLGSTYD L LN+ +C  +GV V  V++NK  +DK+   R
Sbjct:   62 REHWGLTCNYRDMSPLVLDKGYTRRYLDGQV-------DISKQFAAIQQAFDNMLSQKQVVIVEGTGHTGVGSIVGCNNADVAAVLGIGVVLVANGGLGSTYDELELNRQMCMSKGVPVSGVIINKASSDKLAATR 190          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: F0Y1W3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1W3_AURAN)

HSP 1 Score: 127 bits (318), Expect = 8.910e-35
Identity = 63/131 (48.09%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    1 KEHFGLTN-SYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            KE+FG+ + +Y  MSP+I+ + YT++Y+D         + +     A  EA ++  V+EGTGH GVGSI+G +NADVA+W+G D++LVANGG+GS +D L +N+ +   +GVRVR V+LNKV+ DKVDM+R
Sbjct:    2 KEYFGMEHVAYEDMSPVIVPRNYTKQYVDGGGSLLAEQKAKILAATARVEASSEATVLEGTGHVGVGSIIGASNADVAAWVGADVVLVANGGIGSAFDELEMNRIMLKDKGVRVRGVILNKVRPDKVDMIR 132          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A836CAU9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU9_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.990e-34
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAY------NDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            KE FGL  +Y  MSP+++ +GYTR+Y+D K+C       +  +  ++H ++      ND VV+EGTGHTGVGS++ LNNA VA  L  +++LVANGGLGS +D L LN+ +C   GV++  V+LNKV  DKV+MV+
Sbjct:   62 KEFFGLKGNYEDMSPVVVPRGYTRDYIDGKIC-------EQGQLDSIHRSFENIQRQNDIVVLEGTGHTGVGSVINLNNAQVAKTLNAEMILVANGGLGSAFDELELNRCMCKEYGVKISGVILNKVVPDKVEMVQ 190          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A067CJP5_SAPPC (DRTGG domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJP5_SAPPC)

HSP 1 Score: 129 bits (324), Expect = 1.680e-33
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 KEHFGLTN-SYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMV 387
            KE F L N  Y  MSP+++  GYTREYLD K+         +  +  +  A NDF VVEGTGHTGVGSIV +NNA VA+ LGLD++L+ANGG+GS +D LALN+ +C   GV++  V+LNKV+ADK+DM+
Sbjct:   62 KEVFNLKNCDYADMSPVVIPSGYTREYLDGKISLESQLEKISSSFNRI-AARNDFTVVEGTGHTGVGSIVNVNNARVAAELGLDMILIANGGIGSAFDDLALNRVMCKEYGVKICGVILNKVRADKMDMM 190          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A7R9U109_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U109_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.770e-33
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMVR 390
            KEHFGLT  Y  MSP+++ +GYTR+++D K      +    R + AL    +D VV+EGTGHTGVGSIV +NNA VAS LG +++L+ANGGLGS +D L LN+ +C   GV++  V++NKV  D+V+M+R
Sbjct:   79 KEHFGLTCKYQDMSPVLVPRGYTRDFIDGKRSEKDQEDAILRSFEALSRD-SDVVVMEGTGHTGVGSIVNMNNAKVASMLGAEMILIANGGLGSAFDELELNRCMCKEYGVKISGVVINKVLPDRVEMIR 207          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A024GL16_9STRA (DRTGG domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GL16_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.310e-33
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    4 EHFGL-TNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMV 387
            E FGL T  Y  MSP+++  GYT++YLD K+          + +  + E  NDF +VEGTGHTGVGSIV +NNA +A+ LG+DI+L+ANGG+GS++D LALN ++C   GV+VR V+LNKV   KVDM+
Sbjct:   81 EIFGLPTCEYRDMSPIVIPPGYTKQYLDGKITLETQLHQIKKSFTCIAEK-NDFTLVEGTGHTGVGSIVNINNARIAAELGIDIILIANGGIGSSFDDLALNYHMCKSYGVQVRGVILNKVLPAKVDMM 208          
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Match: A0A024TU32_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU32_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.610e-33
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 KEHFGLTN-SYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEAYNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLALNQNLCNCRGVRVRAVLLNKVKADKVDMV 387
            KE FGLT   Y  MSP+++  GYTR++LD K+        + R       + NDF VVEGTGHTGVGSIV +NNA VA+ LG+D++L+ANGG+GS +D L+LN+ LC   GVRVR V+LNKV+ +KVDM+
Sbjct:   64 KEIFGLTRCDYADMSPVVIPPGYTRDFLDGKITLES-QLSKIRSSFDRITSQNDFTVVEGTGHTGVGSIVNVNNARVAAELGVDMVLIANGGIGSAFDDLSLNRALCQQYGVRVRGVILNKVRPNKVDMM 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1072.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV3_ECTSI3.310e-4666.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE31_9PHAE7.290e-4564.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G5J3_9STRA8.110e-3755.38Phosphate acetyltransferase n=1 Tax=Hondaea fermen... [more]
A0A836C8E0_9STRA5.940e-3651.47AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
F0Y1W3_AURAN8.910e-3548.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CAU9_9STRA5.990e-3447.79AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A067CJP5_SAPPC1.680e-3353.85DRTGG domain-containing protein n=4 Tax=Saprolegni... [more]
A0A7R9U109_9STRA1.770e-3350.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A024GL16_9STRA3.310e-3351.94DRTGG domain-containing protein n=2 Tax=Albugo Tax... [more]
A0A024TU32_9STRA3.610e-3353.85Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1072contigH-paniculata_contig1072:21812..22981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D8LFV3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA domain
EggNOG OGs2RN67@2759,COG0857@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1072.458.1prot_H-paniculata_contig1072.458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1072 21812..22981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.828884-CDS-H-paniculata_contig1072:21811..219631622928775.828884-CDS-H-paniculata_contig1072:21811..21963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 21812..21963 +
1691480615.3398209-CDS-H-paniculata_contig1072:21811..219631691480615.3398209-CDS-H-paniculata_contig1072:21811..21963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 21812..21963 +
1622928775.8558338-CDS-H-paniculata_contig1072:22176..222141622928775.8558338-CDS-H-paniculata_contig1072:22176..22214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22177..22214 +
1691480615.3545127-CDS-H-paniculata_contig1072:22176..222141691480615.3545127-CDS-H-paniculata_contig1072:22176..22214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22177..22214 +
1622928775.907879-CDS-H-paniculata_contig1072:22465..226351622928775.907879-CDS-H-paniculata_contig1072:22465..22635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22466..22635 +
1691480615.3638518-CDS-H-paniculata_contig1072:22465..226351691480615.3638518-CDS-H-paniculata_contig1072:22465..22635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22466..22635 +
1622928775.92275-CDS-H-paniculata_contig1072:22951..229811622928775.92275-CDS-H-paniculata_contig1072:22951..22981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22952..22981 +
1691480615.3727646-CDS-H-paniculata_contig1072:22951..229811691480615.3727646-CDS-H-paniculata_contig1072:22951..22981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1072 22952..22981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1072.458.1

>prot_H-paniculata_contig1072.458.1 ID=prot_H-paniculata_contig1072.458.1|Name=mRNA_H-paniculata_contig1072.458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
KEHFGLTNSYNAMSPLILHKGYTREYLDDKVCSHVVDRPQAREYCALHEA
YNDFVVVEGTGHTGVGSIVGLNNADVASWLGLDILLVANGGLGSTYDVLA
LNQNLCNCRGVRVRAVLLNKVKADKVDMVR
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mRNA from alignment at H-paniculata_contig1072:21812..22981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1072.458.1 ID=mRNA_H-paniculata_contig1072.458.1|Name=mRNA_H-paniculata_contig1072.458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig1072:21812..22981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACACTTCGGCCTTACTAATTCTTACAACGCGATGAGTCCCCTTAT CCTCCACAAGGGCTATACGAGAGAGTACCTCGACGACAAGGTTTGTTCCC ACGTGGTAGATAGGCCCCAAGCCCGGGAGTACTGTGCGCTACACGAAGCG TAGTCGAATTGCGTGAAGGCACAGTAAGTGGGTGATCCATCGTTGTTTTT TCTCGCTTGAGCTCACGCTTGCTTAGTTTATGTTCTGTACCAGGCTCATA ATCACAACGCCTTGCTCTCATCTTGTTGTTCCCCCGTCTCTCTACTATTC ACTCAGATAAACCCCCAAACAGAAAGACGGCGGATTCGAGAAGGGTTCGA GGAACTGGTGGAGAGCAACGACTTCGTGGTCGTGGAGGGTACTGGCCATA CTGGTGAGAGTTGACAAGTGTTGCGTTTAACTTCTATTAAGCATGCTCTC CTGTTCTGTCCGTTTGAAAAATCGCGTTTCGTATCAGTCGTTGTGCATGC CGTGGTCCCTAACGTCCACAATTTAATGTATGCAGGGGGCACGCAACCCT TCTTGGGTGGACATATTATTGCGACATTGTAGGAGATCGTGTTGCTCATT TCCCTGAACTATATGCGCTTCGTCAGCTCGAAGATATTTTCCCTCCTCGG GCAGGAGTCGGCAGTATCGTCGGTTTGAACAACGCGGACGTGGCAAGCTG GCTGGGGTTAGACATCTTGCTGGTGGCAAACGGCGGCTTGGGTTCAACGT ACGATGTCCTGGCTCTCAACCAGAACCTCTGTAACTGTAGGGGAGTGAGA GTGCGAGCTGTTCTCTTAAACAAGGTACGTACATGAAACGCCTGATTGAT CAAGGGTGTTGCAGACCCTCTGCCCTCACATTTTTGGGTTTTTTCCGGGG CGCACGATCGCATGTTCGTTTCATTCAAGCATGGGGGTGTCTGAATTGTT GTTGAAGTGTCTGTAAGTTTCTAATGGAAATGAAAGGAGAGTTCCAGGCT CTTCCCATTCTGTTACAGAACAGTAGTTAGACTGCGTTCACGTTAGAGGG AAGCCGTATTTCCTGCGTGGGTGAATATCCTGTTCAGTATTTTGAACAAC GATATTCCGTCTGATATGCGGCATGGCATGACCGATTCAGGTGAAGGCGG ACAAGGTGGACATGGTCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1072:21812..22981+

>mRNA_H-paniculata_contig1072.458.1 ID=mRNA_H-paniculata_contig1072.458.1|Name=mRNA_H-paniculata_contig1072.458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig1072:21812..22981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACACTTCGGCCTTACTAATTCTTACAACGCGATGAGTCCCCTTAT
CCTCCACAAGGGCTATACGAGAGAGTACCTCGACGACAAGGTTTGTTCCC
ACGTGGTAGATAGGCCCCAAGCCCGGGAGTACTGTGCGCTACACGAAGCG
TAAAGGAACACTTCGGCCTTACTAATTCTTACAACGCGATGAGTCCCCTT
ATCCTCCACAAGGGCTATACGAGAGAGTACCTCGACGACAAGGTTTGTTC
CCACGTGGTAGATAGGCCCCAAGCCCGGGAGTACTGTGCGCTACACGAAG
CGTACAACGACTTCGTGGTCGTGGAGGGTACTGGCCATACTGCAACGACT
TCGTGGTCGTGGAGGGTACTGGCCATACTGGAGTCGGCAGTATCGTCGGT
TTGAACAACGCGGACGTGGCAAGCTGGCTGGGGTTAGACATCTTGCTGGT
GGCAAACGGCGGCTTGGGTTCAACGTACGATGTCCTGGCTCTCAACCAGA
ACCTCTGTAACTGTAGGGGAGTGAGAGTGCGAGCTGTTCTCTTAAACAAG
GAGTCGGCAGTATCGTCGGTTTGAACAACGCGGACGTGGCAAGCTGGCTG
GGGTTAGACATCTTGCTGGTGGCAAACGGCGGCTTGGGTTCAACGTACGA
TGTCCTGGCTCTCAACCAGAACCTCTGTAACTGTAGGGGAGTGAGAGTGC
GAGCTGTTCTCTTAAACAAGGTGAAGGCGGACAAGGTGGACATGGTCAGG
GTGAAGGCGGACAAGGTGGACATGGTCAGG
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