mRNA_H-paniculata_contig10718.456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10718.456.1
Unique NamemRNA_H-paniculata_contig10718.456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: D8LB04_ECTSI (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB04_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 6.840e-36
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPE 243
            +W  YN R MSRIYP G+R+DSSNYDP PSWN+GSQIV+LNYQTSG  MRLNDGKFRDNG CGYLLKP  LR TG  F+PE
Sbjct:   19 DWVVYNARNMSRIYPAGSRVDSSNYDPVPSWNVGSQIVALNYQTSGTPMRLNDGKFRDNGECGYLLKPECLR-TGSPFHPE 98          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: A0A6H5KNM2_9PHAE (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.770e-34
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPE 243
            +W  YN R MSRIYP G+R+DSSNYDP PSWN+GSQIV+LNYQTSG  MRLNDGKFRDNG CGYLLKP  LR TG  F+PE
Sbjct:  201 DWVVYNARNMSRIYPAGSRVDSSNYDPVPSWNVGSQIVALNYQTSGTPMRLNDGKFRDNGECGYLLKPECLR-TGSPFHPE 280          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: A0A836C9T5_9STRA (Phosphoinositide phospholipase C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.480e-30
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRK 219
            EW  YN+RQMSRIYPGG R+DSSNYDP P W  GSQIV+LNYQTSG SM LN G+FRDNGGCGY+LKP  L+K
Sbjct:  550 EWIVYNQRQMSRIYPGGQRVDSSNYDPMPHWCAGSQIVALNYQTSGMSMYLNHGRFRDNGGCGYVLKPPCLQK 622          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: A0A7S2FC25_9STRA (Phosphoinositide phospholipase C (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FC25_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.310e-28
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLR 216
            +W  YN    SRIYP G R++SSNYDP PSW+ GSQ+V+LNYQT    M+LN GKF DNGGCGY+LKP  LR
Sbjct:   31 DWVTYNMTNFSRIYPDGTRVNSSNYDPSPSWSTGSQLVALNYQTHDTPMQLNSGKFLDNGGCGYILKPTFLR 102          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: UPI001FB82629 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB82629)

HSP 1 Score: 114 bits (286), Expect = 6.900e-28
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPE 243
            ++ +YN RQ+SRIYPGG R DSSNY+PQ  WN+G QIV+LN+QT+G  M LNDG FR NGGCGY+LKP  +R  G  F+PE
Sbjct:  531 DFVQYNTRQLSRIYPGGLRTDSSNYNPQEMWNVGCQIVALNFQTAGLEMDLNDGLFRQNGGCGYVLKPDFMRDGGAQFSPE 611          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: UPI0009E44E9D (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E44E9D)

HSP 1 Score: 114 bits (285), Expect = 9.570e-28
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPET 246
            E+ EYNKRQ+SRIYP G R+DSSNY+PQ +WN G QIV+LNYQT    M LN GKFR NG  GY+LKP  LR   + FNP T
Sbjct:  706 EYVEYNKRQLSRIYPAGGRVDSSNYNPQQAWNAGCQIVALNYQTDSEPMHLNQGKFRTNGRAGYILKPKHLRDPSLKFNPHT 787          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: A0A2B4RY04_STYPI (Phosphoinositide phospholipase C n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RY04_STYPI)

HSP 1 Score: 114 bits (284), Expect = 1.310e-27
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPET 246
            E+ EYNKRQ+SRIYP G R+DSSNY+PQ +WN G QIV+LNYQT    M LN GKFR NG  GY+LKP VLR + +  NP T
Sbjct:  726 EFVEYNKRQLSRIYPAGGRVDSSNYNPQQAWNAGCQIVALNYQTDSEPMHLNQGKFRTNGRAGYILKPKVLRDSSLKLNPLT 807          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: A0A672HX16_SALFA (Phosphoinositide phospholipase C n=10 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HX16_SALFA)

HSP 1 Score: 113 bits (282), Expect = 2.410e-27
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPE 243
            ++ +YN RQ+SR+YPGG R DSSNY+PQ  WN+G QIV+LN+QT+G  M LNDG FR NGGCGY+LKP  +R     FNPE
Sbjct:  555 DFVQYNMRQLSRVYPGGLRTDSSNYNPQDMWNVGCQIVALNFQTAGLEMDLNDGLFRQNGGCGYVLKPDFMRDATSRFNPE 635          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: UPI001CF494D9 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF494D9)

HSP 1 Score: 112 bits (281), Expect = 3.310e-27
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNPET 246
            E+ +YN+RQ+SRIYPGG R+DSSNY+PQ +WN G QIV+LNYQT   SM LN GKFR NG  GY+LKP ++R     FNP T
Sbjct:  591 EFVKYNQRQLSRIYPGGGRVDSSNYNPQLAWNAGCQIVALNYQTDSESMHLNQGKFRTNGRAGYILKPQIMRDPEKNFNPNT 672          
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Match: UPI000719E741 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E741)

HSP 1 Score: 107 bits (268), Expect = 3.660e-27
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 EWAEYNKRQMSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDNGGCGYLLKPAVLRKTGIVFNP 240
            E+ E+NK  +SRIYP G R DSSN+DP P WN G QIV+LNYQTSG  M+LN GKF DNGGCGY+ KP  L    ++F+P
Sbjct:   19 EYVEHNKLYISRIYPNGTRTDSSNFDPVPLWNTGCQIVALNYQTSGEPMQLNKGKFLDNGGCGYVRKPQYLLDRKLMFDP 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10718.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB04_ECTSI6.840e-3675.31Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A6H5KNM2_9PHAE2.770e-3475.31Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A836C9T5_9STRA6.480e-3075.34Phosphoinositide phospholipase C n=1 Tax=Tribonema... [more]
A0A7S2FC25_9STRA4.310e-2863.89Phosphoinositide phospholipase C (Fragment) n=1 Ta... [more]
UPI001FB826296.900e-2862.961-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]
UPI0009E44E9D9.570e-2863.411-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]
A0A2B4RY04_STYPI1.310e-2763.41Phosphoinositide phospholipase C n=1 Tax=Stylophor... [more]
A0A672HX16_SALFA2.410e-2761.73Phosphoinositide phospholipase C n=10 Tax=Salarias... [more]
UPI001CF494D93.310e-2762.201-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]
UPI000719E7413.660e-2761.251-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10718contigH-paniculata_contig10718:6932..7773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LB04
KEGG rclassRC00017,RC00425
KEGG koko:K05857
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol phospholipase C activity
EggNOG OGsKOG0169@1,KOG0169@2759
EC3.1.4.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size246
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10718.456.1prot_H-paniculata_contig10718.456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10718 6959..7773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.2517126-UTR-H-paniculata_contig10718:6931..69581622928775.2517126-UTR-H-paniculata_contig10718:6931..6958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10718 6932..6958 +
1691480614.999486-UTR-H-paniculata_contig10718:6931..69581691480614.999486-UTR-H-paniculata_contig10718:6931..6958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10718 6932..6958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.2634056-CDS-H-paniculata_contig10718:6958..70391622928775.2634056-CDS-H-paniculata_contig10718:6958..7039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10718 6959..7039 +
1691480615.0105896-CDS-H-paniculata_contig10718:6958..70391691480615.0105896-CDS-H-paniculata_contig10718:6958..7039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10718 6959..7039 +
1622928775.273597-CDS-H-paniculata_contig10718:7635..77731622928775.273597-CDS-H-paniculata_contig10718:7635..7773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10718 7636..7773 +
1691480615.0191576-CDS-H-paniculata_contig10718:7635..77731691480615.0191576-CDS-H-paniculata_contig10718:7635..7773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10718 7636..7773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10718.456.1

>prot_H-paniculata_contig10718.456.1 ID=prot_H-paniculata_contig10718.456.1|Name=mRNA_H-paniculata_contig10718.456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MSRIYPGGARLDSSNYDPQPSWNLGSQIVSLNYQTSGNSMRLNDGKFRDN
GGCGYLLKPAVLRKTGIVFNPET
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mRNA from alignment at H-paniculata_contig10718:6932..7773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10718.456.1 ID=mRNA_H-paniculata_contig10718.456.1|Name=mRNA_H-paniculata_contig10718.456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig10718:6932..7773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATGGGCAGAGTATAACAAACGACAGATGTCGAGAATCTACCCTGGGGG AGCCAGATTAGATTCCTCCAACTACGACCCGCAGCCAAGCTGGAACCTCG GAAGTCAGGTATGTAACCCTACGATACACGATGGATGTGTGCCCCTCAGT GCGTCTCACTTGAGCAGTATTAGTGATGAGAGAACGAAGGCATTTAGGCC CCACACAGGGAAGGGGGTTACAGGTGTCGAAACCGAACAAGATGCGAGCC TCCTCCCAATTATAGTCATCAATACGCGCAGCCATTTTATTCTTGCTCAC AGGTGCATTTATCTATGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGT GTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTGT CTGTGTCTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTCTGTGTCTATGT CTATGTCTATGTCTATGTCTATGTCTATGTCTATGTCTATGTCTATGTCT ATGTCTATGTCTATGTCTATGTCTATGTCTATGTCTATGTCTATGTCTAT GTCTATGTCTATGTCTATGTCTATGTCTGTGTCTGTGTCTGTGTCTGTCT GTGTATTTTTTTGTTTTAACGCGGAAGCTGAGAGGATTCCCGACTTGTTA AAATACTTTTAGTCTGCTTCTCTGTCTGTCTGTTCGTTTTTGGTTGTTTG GTAGATCGTGTCTTTGAATTACCAGACGTCAGGAAACTCTATGCGTCTCA ATGACGGTAAGTTTAGGGACAACGGCGGGTGCGGCTACCTACTCAAGCCG GCGGTCCTGAGGAAAACAGGAATTGTGTTCAACCCCGAAACT
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Coding sequence (CDS) from alignment at H-paniculata_contig10718:6932..7773+

>mRNA_H-paniculata_contig10718.456.1 ID=mRNA_H-paniculata_contig10718.456.1|Name=mRNA_H-paniculata_contig10718.456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig10718:6932..7773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAGAATCTACCCTGGGGGAGCCAGATTAGATTCCTCCAACTACGA
CCCGCAGCCAAGCTGGAACCTCGGAAGTCAGATGTCGAGAATCTACCCTG
GGGGAGCCAGATTAGATTCCTCCAACTACGACCCGCAGCCAAGCTGGAAC
CTCGGAAGTCAGATCGTGTCTTTGAATTACCAGACGTCAGGAAACTCTAT
GCGTCTCAATGACGGTAAGTTTAGGGACAACGGCGGGTGCGGCTACCTAC
TCAAGCCGGCGGTCCTGAGGAAAACAGGAATTGTGTTCAACCCCGAAACT
ATCGTGTCTTTGAATTACCAGACGTCAGGAAACTCTATGCGTCTCAATGA
CGGTAAGTTTAGGGACAACGGCGGGTGCGGCTACCTACTCAAGCCGGCGG
TCCTGAGGAAAACAGGAATTGTGTTCAACCCCGAAACT
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