mRNA_H-paniculata_contig10715.455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10715.455.1
Unique NamemRNA_H-paniculata_contig10715.455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.630e-10
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1
Query:    4 QVVVMQNIFYERNISLVFDLKGSSRSRWVRPE 99
            QVVVMQNIFY+RNISLVFDLKGS+RSR+VRP+
Sbjct: 2922 QVVVMQNIFYQRNISLVFDLKGSTRSRYVRPD 2953          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.640e-10
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1
Query:    4 QVVVMQNIFYERNISLVFDLKGSSRSRWVRPE 99
            QVVVMQNIFY+RNISLVFDLKGS+RSR+VRP+
Sbjct: 2621 QVVVMQNIFYQRNISLVFDLKGSTRSRYVRPD 2652          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A7S3NNB9_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNB9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.900e-7
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 QQVVVMQNIFYERNISLVFDLKGSSRSRWVR 93
            +QVV+MQN+FYER+I LVFDLKGS+RSR+ R
Sbjct: 1553 EQVVIMQNLFYERSIRLVFDLKGSTRSRYTR 1583          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A812S8K2_SYMMI (FAB1B protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S8K2_SYMMI)

HSP 1 Score: 50.4 bits (119), Expect = 4.540e-6
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 QQVVVMQNIFYERNISLVFDLKGSSRSRWVRPEQG 105
            +QVVVM+N+F+ERNI+ +FDLKGSSR+R+V    G
Sbjct:  493 EQVVVMENLFFERNITRIFDLKGSSRARYVEMMAG 527          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A8K1FI32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI32_PYTOL)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    7 VVVMQNIFYERNISLVFDLKGSSRSRWVRPEQG 105
            V+VM+N FY ++IS +FDLKGSSR+R+VRP  G
Sbjct: 1369 VIVMENAFYRQSISRIFDLKGSSRNRYVRPVDG 1401          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A7S3HQB0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQB0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.830e-5
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 QQVVVMQNIFYERNISLVFDLKGSSRSRWV 90
            + VVVM+NIFY+RNI+  FDLKGSSR+R+V
Sbjct:   20 ENVVVMENIFYQRNITRSFDLKGSSRARYV 49          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A7S2BAF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BAF1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.940e-5
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 QQVVVMQNIFYERNISLVFDLKGSSRSRWVR 93
            +QVVVMQN+F+ER I+ VFDLKGS+RSR+V+
Sbjct:   80 EQVVVMQNLFHERVITRVFDLKGSARSRYVQ 110          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: S8CZ86_9LAMI (1-phosphatidylinositol-3-phosphate 5-kinase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CZ86_9LAMI)

HSP 1 Score: 48.1 bits (113), Expect = 2.970e-5
Identity = 20/35 (57.14%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    7 VVVMQNIFYERNISLVFDLKGSSRSRWVRPEQGLD 111
            V+VM+N+F++RNIS V+DLKGS+RSR++   +G D
Sbjct: 1280 VMVMENLFFKRNISKVYDLKGSARSRYIPDAKGTD 1314          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: A0A835ZAJ6_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.120e-5
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 1
Query:    4 QVVVMQNIFYERNISLVFDLKGSSRSRWV 90
            QVVVMQN+F+ RNI+ VFDLKGS+RSR+V
Sbjct:  157 QVVVMQNLFHGRNIARVFDLKGSTRSRYV 185          
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Match: UPI001CF2D496 (LOW QUALITY PROTEIN: 1-phosphatidylinositol 3-phosphate 5-kinase-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2D496)

HSP 1 Score: 47.8 bits (112), Expect = 4.060e-5
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 QQVVVMQNIFYERNISLVFDLKGSSRSRWVRPEQGLDN 114
            Q V+VM+N+FY+RNI+  FDLKGS RSR+V+   G++N
Sbjct: 2125 QDVLVMENLFYDRNINKTFDLKGSMRSRYVQTS-GMNN 2161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10715.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G3Z3_ECTSI9.630e-1087.501-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A6H5K771_9PHAE9.640e-1087.50PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3NNB9_9STRA6.900e-774.191-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A812S8K2_SYMMI4.540e-662.86FAB1B protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A8K1FI32_PYTOL1.160e-563.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3HQB0_9STRA2.830e-570.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2BAF1_9STRA2.940e-570.97Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
S8CZ86_9LAMI2.970e-557.141-phosphatidylinositol-3-phosphate 5-kinase (Fragm... [more]
A0A835ZAJ6_9STRA3.120e-575.86PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
UPI001CF2D4964.060e-557.89LOW QUALITY PROTEIN: 1-phosphatidylinositol 3-phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10715contigH-paniculata_contig10715:8019..8135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size102
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.1922634-CDS-H-paniculata_contig10715:8018..81201622928775.1922634-CDS-H-paniculata_contig10715:8018..8120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 8019..8120 -
1691480614.9783707-CDS-H-paniculata_contig10715:8018..81201691480614.9783707-CDS-H-paniculata_contig10715:8018..8120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 8019..8120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.2090652-UTR-H-paniculata_contig10715:8120..81351622928775.2090652-UTR-H-paniculata_contig10715:8120..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10715 8121..8135 -
1691480614.989508-UTR-H-paniculata_contig10715:8120..81351691480614.989508-UTR-H-paniculata_contig10715:8120..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10715 8121..8135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10715.455.1prot_H-paniculata_contig10715.455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10715 8019..8120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10715.455.1

>prot_H-paniculata_contig10715.455.1 ID=prot_H-paniculata_contig10715.455.1|Name=mRNA_H-paniculata_contig10715.455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
MQNIFYERNISLVFDLKGSSRSRWVRPEQGLDNN
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mRNA from alignment at H-paniculata_contig10715:8019..8135-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10715.455.1 ID=mRNA_H-paniculata_contig10715.455.1|Name=mRNA_H-paniculata_contig10715.455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig10715:8019..8135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAGGTGGTTGTAATGCAAAACATCTTCTACGAGCGTAATATCAGCCT GGTTTTCGACCTGAAGGGATCAAGCCGCAGCCGCTGGGTACGCCCCGAGC AAGGCCTAGACAACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10715:8019..8135-

>mRNA_H-paniculata_contig10715.455.1 ID=mRNA_H-paniculata_contig10715.455.1|Name=mRNA_H-paniculata_contig10715.455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig10715:8019..8135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAACATCTTCTACGAGCGTAATATCAGCCTGGTTTTCGACCTGAA
GGGATCAAGCCGCAGCCGCTGGGTACGCCCCGAGCAAGGCCTAGACAACA
ACATGCAAAACATCTTCTACGAGCGTAATATCAGCCTGGTTTTCGACCTG
AAGGGATCAAGCCGCAGCCGCTGGGTACGCCCCGAGCAAGGCCTAGACAA
CAAC
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