mRNA_H-paniculata_contig10715.454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10715.454.1
Unique NamemRNA_H-paniculata_contig10715.454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A835ZDL9_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.590e-49
Identity = 80/98 (81.63%), Postives = 90/98 (91.84%), Query Frame = 1
Query:   13 SQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            S+AVFQTAIMNDTLFL  V +VDYSIVVGLD+DRRELVVGIIDYMRQYDIIKRVE + K+++M+ GQAEPTIVQPS+YK RFQQAM+RYFM VPDKWT
Sbjct:   15 SKAVFQTAIMNDTLFLSLVNVVDYSIVVGLDEDRRELVVGIIDYMRQYDIIKRVERMGKSVSMVVGQAEPTIVQPSMYKTRFQQAMERYFMTVPDKWT 112          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.060e-43
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 1
Query:   10 LSQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            L +AVF TAI+NDTLFL+ V IVDYSIVVGLD++RRELVVGIIDYMRQYDIIKR+E + K+++MI GQAEPTIVQPSLYK RFQQAMDRYFM VPDKWT
Sbjct: 2795 LGKAVFHTAILNDTLFLNIVNIVDYSIVVGLDEERRELVVGIIDYMRQYDIIKRMERMGKSVSMIAGQAEPTIVQPSLYKTRFQQAMDRYFMTVPDKWT 2893          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.060e-43
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 1
Query:   10 LSQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            L +AVF TAI+NDTLFL+ V IVDYSIVVGLD++RRELVVGIIDYMRQYDIIKR+E + K+++MI GQAEPTIVQPSLYK RFQQAMDRYFM VPDKWT
Sbjct: 3097 LGKAVFHTAILNDTLFLNIVNIVDYSIVVGLDEERRELVVGIIDYMRQYDIIKRMERMGKSVSMIAGQAEPTIVQPSLYKTRFQQAMDRYFMTVPDKWT 3195          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A7S2BAF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BAF1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 8.420e-39
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   25 FQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            F  A++NDTLFL  + +VDYSI+VG+D+++ ELVVGIIDYMRQYDIIKR+E + K++ MI GQAEPTI+QP  Y+ RFQQAM RYFMMVPDKWT
Sbjct:  152 FNKAVLNDTLFLSIINVVDYSILVGMDEEKNELVVGIIDYMRQYDIIKRMERMGKSVGMIAGQAEPTIIQPPAYRNRFQQAMQRYFMMVPDKWT 245          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: F0YGM7_AURAN (PIPK domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGM7_AURAN)

HSP 1 Score: 137 bits (345), Expect = 4.000e-37
Identity = 63/98 (64.29%), Postives = 83/98 (84.69%), Query Frame = 1
Query:   13 SQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            ++A F +A++NDTLFL  + +VDYSI+VG+D++  ELVVGIIDYMRQYDIIK++E + K++ MI GQAEPT++QP  Y+ RFQ AM+RYFMMVPDKWT
Sbjct:  262 AKAYFNSAVLNDTLFLSLINVVDYSILVGMDEENHELVVGIIDYMRQYDIIKKMERMGKSVGMIAGQAEPTVIQPPNYRNRFQAAMERYFMMVPDKWT 359          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A7S2HBR3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HBR3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.670e-36
Identity = 60/98 (61.22%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   13 SQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            ++AVF  +I+NDTLFL  + ++DYSI+VG+D++R ELVVGIID+MRQYDI+K++E V K++ M+ G   PTI+QP LYKARF  AM+RYFM VP KWT
Sbjct:  148 AKAVFHMSILNDTLFLSIINVLDYSILVGIDEERMELVVGIIDFMRQYDILKQMERVGKSLPMVVGSEAPTIIQPPLYKARFTNAMERYFMTVPSKWT 245          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: W7TP52_9STRA (Fyve finger-containing phosphoinositide n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP52_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.690e-35
Identity = 59/102 (57.84%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 LLVLSQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            L +L QA F  A++ND  FL  +KI+DYSI++G+D++++ LVVGIIDYMRQYDIIK++E + K++ MI GQAEPT++QP  Y+ARF  AM++YF  +PDKWT
Sbjct:   52 LYILDQAYFMRAMINDISFLSYIKIIDYSILIGVDEEQKALVVGIIDYMRQYDIIKKMERMGKSVGMIAGQAEPTVIQPQPYRARFLGAMEKYFAGIPDKWT 153          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A8J2X5N4_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5N4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.770e-35
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   13 SQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            ++A F  A+MNDTLFL  + +VDYSI+VG+D D  +LVVGIIDY+RQYDIIK+VE V K++ MI GQAEPT++QP  Y+ RFQ AM++YFMMVPDKWT
Sbjct: 1564 AKAYFNNAVMNDTLFLSLISVVDYSILVGMDDDNHQLVVGIIDYLRQYDIIKKVERVGKSVGMIAGQAEPTVIQPPNYRNRFQLAMEKYFMMVPDKWT 1661          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A7S2U873_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U873_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.310e-35
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   13 SQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKWT 306
            ++AVF  +++ND LFL  + ++DYSI+VG+D++R ELVVGIID+MRQYDI+K++E V K++  + G   PTI+QP LYKARF  AM+RYFM VP KWT
Sbjct:   30 AKAVFHMSVLNDALFLSIINVLDYSILVGIDEERMELVVGIIDFMRQYDILKQMERVGKSLPTLVGSEAPTIIQPPLYKARFTNAMERYFMTVPSKWT 127          
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Match: A0A7S3HPL1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPL1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.760e-35
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   25 FQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMRQYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDKW 303
            F  A+ NDTLFL  V +VDYSI+VG D++  E+VVGIIDYMRQYDIIK++E + K++ MI GQAEPTI+QPS Y+ RF  AM+RYFM +PDKW
Sbjct:  110 FHKAVQNDTLFLSIVNVVDYSILVGFDENTHEVVVGIIDYMRQYDIIKKMERMGKSVGMIAGQAEPTIIQPSQYRKRFSLAMERYFMTIPDKW 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10715.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDL9_9STRA1.590e-4981.63PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5K771_9PHAE1.060e-4380.81PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI1.060e-4380.811-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S2BAF1_9STRA8.420e-3969.15Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YGM7_AURAN4.000e-3764.29PIPK domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2HBR3_9STRA6.670e-3661.22Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TP52_9STRA1.690e-3557.84Fyve finger-containing phosphoinositide n=1 Tax=Na... [more]
A0A8J2X5N4_9STRA1.770e-3565.311-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S2U873_9STRA2.310e-3558.16Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3HPL1_9STRA3.760e-3564.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10715contigH-paniculata_contig10715:3881..5273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.9e-37
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10715.454.1prot_H-paniculata_contig10715.454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10715 3881..5273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.093759-CDS-H-paniculata_contig10715:3880..39221622928775.093759-CDS-H-paniculata_contig10715:3880..3922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 3881..3922 -
1691480614.9321632-CDS-H-paniculata_contig10715:3880..39221691480614.9321632-CDS-H-paniculata_contig10715:3880..3922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 3881..3922 -
1622928775.1253657-CDS-H-paniculata_contig10715:4464..46051622928775.1253657-CDS-H-paniculata_contig10715:4464..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 4465..4605 -
1691480614.9504645-CDS-H-paniculata_contig10715:4464..46051691480614.9504645-CDS-H-paniculata_contig10715:4464..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 4465..4605 -
1622928775.142398-CDS-H-paniculata_contig10715:5150..52731622928775.142398-CDS-H-paniculata_contig10715:5150..5273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 5151..5273 -
1691480614.9624562-CDS-H-paniculata_contig10715:5150..52731691480614.9624562-CDS-H-paniculata_contig10715:5150..5273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10715 5151..5273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10715.454.1

>prot_H-paniculata_contig10715.454.1 ID=prot_H-paniculata_contig10715.454.1|Name=mRNA_H-paniculata_contig10715.454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
LLVLSQAVFQTAIMNDTLFLHDVKIVDYSIVVGLDQDRRELVVGIIDYMR
QYDIIKRVESVSKTMTMITGQAEPTIVQPSLYKARFQQAMDRYFMMVPDK
WT
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mRNA from alignment at H-paniculata_contig10715:3881..5273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10715.454.1 ID=mRNA_H-paniculata_contig10715.454.1|Name=mRNA_H-paniculata_contig10715.454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1393bp|location=Sequence derived from alignment at H-paniculata_contig10715:3881..5273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTGGTCTTGTCTCAGGCTGTGTTCCAGACGGCGATCATGAATGATAC GCTGTTCCTGCACGATGTGAAAATCGTGGATTACAGTATCGTCGTAGGGC TTGATCAAGATCGACGAGAATTGGTGAGCACTCTTGCTGCACCCTGGGGG GTCAGCACAACCGCGCCTGACTGATTAGCTAAAACTAGCAGAGCAGGAAT TTTTTACCACGACCTCACAAATCGACCTATTTATTTGCTAATTTTGTGTA CAGGATATTCTGTGTGTATCTACTCGTGACGTTGTGGTTGTGCATTTTGT GGAGCTTGTGCTTCGAAGTTGTATATGCTTTAAAGCCATCAGATGGTTGT AAGCAGCAGTCAATGATGACAGTATAACGGGAGGTCACACCTCCGAAGTA GCGTACATTCATAGCGTTGGGGTGTTCTTGCCGCTTGTGTTTCACAGTTG GATGCACTAGATCAACTTCATGACGTCACTAGGTACATGCCCGTTGGCCC TGCGTGATAAATCTAGAAGTAAATGTCATCGCTGAGCAGTAATGAAGCGC TGTTGTGTTACTGCACGGTTAACGGGGGTGGGCGAGGGCGGGGGGATTCT CCTTGAACGTTGTTTTCAGAGCGTAGCCTTGAAAGATACCGTATTGATGA AAAATGGGACGTATTCAGGTGGTGGGCATCATCGACTACATGAGACAGTA CGACATTATCAAGCGGGTGGAAAGTGTGAGCAAGACCATGACCATGATCA CCGGCCAGGCAGAGCCCACCATCGTGCAGCCGTCGCTCTACAAGGCTCGT TTCCAACAGGTACAGTGATGCGTTCTGAAGACGTACCGCGGGTGACGGCG TTCAACATCTCCTCCCGCCGCCCGCACCCATCTTGGAGATAATCTCTTGT TATCATCACTGTCGTTACGCCTGGGCGTGAGCCTCGAGTCATGAGAGTCA TTCGAGCAGGTGGTTTGCGCTCATAATAATCAACCCTCGATTCGATACCC TAATCTGTTGTAAACGCCACGCGTCATGGGAGCCAGCATTGGACGCGAAG GGTCTTTGGTGCTTAGCTTCTTGGGTCAATTGCAGGCGTGAAAAGCAGAT TGACATGTCGTTTAGTCGCTTTGTGTTTAGCTTACGATCGTCAATCTATG CATGTTTTGTGCGATGTACATAGCTGAACTAGCTGTACCGAGTACCTCCA TTCAATGTTGCCTCCCCGATTTTTGTGTGGTGGTCGCACAGCCCGCAGGA TATTGAGAGCATGAAGTTCGTTTTGTTAACTGTTTGGAAGCGTTTTCACA GTGCACTCTCCCCCGCGCCTCCATATTCCCTGTTTTATATCCTGCATGCA GGCAATGGATCGGTATTTTATGATGGTGCCCGATAAATGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig10715:3881..5273-

>mRNA_H-paniculata_contig10715.454.1 ID=mRNA_H-paniculata_contig10715.454.1|Name=mRNA_H-paniculata_contig10715.454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig10715:3881..5273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTGGTCTTGTCTCAGGCTGTGTTCCAGACGGCGATCATGAATGATAC
GCTGTTCCTGCACGATGTGAAAATCGTGGATTACAGTATCGTCGTAGGGC
TTGATCAAGATCGACGAGAATTGCTCCTGGTCTTGTCTCAGGCTGTGTTC
CAGACGGCGATCATGAATGATACGCTGTTCCTGCACGATGTGAAAATCGT
GGATTACAGTATCGTCGTAGGGCTTGATCAAGATCGACGAGAATTGGTGG
TGGGCATCATCGACTACATGAGACAGTACGACATTATCAAGCGGGTGGAA
AGTGTGAGCAAGACCATGACCATGATCACCGGCCAGGCAGAGCCCACCAT
CGTGCAGCCGTCGCTCTACAAGGCTCGTTTCCAACAGGTGGTGGGCATCA
TCGACTACATGAGACAGTACGACATTATCAAGCGGGTGGAAAGTGTGAGC
AAGACCATGACCATGATCACCGGCCAGGCAGAGCCCACCATCGTGCAGCC
GTCGCTCTACAAGGCTCGTTTCCAACAGGCAATGGATCGGTATTTTATGA
TGGTGCCCGATAAATGGACGGCAATGGATCGGTATTTTATGATGGTGCCC
GATAAATGGACG
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