mRNA_H-paniculata_contig10708.452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10708.452.1
Unique NamemRNA_H-paniculata_contig10708.452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A7S1D4Q6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Q6_CYCTE)

HSP 1 Score: 73.2 bits (178), Expect = 1.760e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGG 268
            MCR+VNCS CGKATWAGCG H++ AL+GV+E DRC  WK G
Sbjct:   30 MCRQVNCSSCGKATWAGCGMHVEYALNGVKEEDRCENWKKG 70
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A7S3YN52_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YN52_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 2.430e-12
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGKCPQAK 286
            MC KV C  C KATW GCG HI+SAL+GV+  DRC GW+ G+CP+ K
Sbjct:   20 MCHKVTCQHCRKATWQGCGFHINSALAGVKMDDRCPGWRKGRCPEKK 66
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A067CBU3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBU3_SAPPC)

HSP 1 Score: 71.2 bits (173), Expect = 2.600e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGK 271
            MC KVNC+ C KATW GCG+HIDSAL+GV ++DRC GW+ GK
Sbjct:    1 MCFKVNCAVCQKATWQGCGQHIDSALAGVADADRCPGWRTGK 42
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: M4B7E5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7E5_HYAAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.320e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:  116 LGEEARLVSIMCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGK 271
            +  + R   +MC KV CS C KA+W GCG HID+AL+GV+E DRC  WK GK
Sbjct:    1 MNAKKRRKDLMCMKVECSTCHKASWKGCGLHIDTALNGVKEQDRCPNWKTGK 52
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A7S3XV58_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV58_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 4.970e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  140 SIMCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGKC 274
            S MCRK+ CS C KATWAGCG HI+SAL GV   DRC GW+ GKC
Sbjct:   14 SKMCRKIQCSSCCKATWAGCGAHIESALQGVAVEDRCPGWETGKC 58
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: G4Z7T4_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z7T4_PHYSP)

HSP 1 Score: 68.9 bits (167), Expect = 1.670e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGK 271
            MC KV C  C KATW GCG+HID+AL+GV+E DRC  WK GK
Sbjct:   12 MCMKVECPTCHKATWKGCGQHIDAALTGVKEEDRCPNWKTGK 53
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BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A6A4BSX2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4BSX2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.790e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGK 271
            MC KV C  C KATW GCG+HID+AL+GV+E DRC  WK GK
Sbjct:    1 MCMKVECPTCQKATWNGCGQHIDAALTGVKEEDRCPNWKTGK 42
[Close]
BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A225VXX0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VXX0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.650e-11
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGKCPQAKISN 295
            MC KV C  C K TW GCG HI++ALSGV+E DRC  WK GK   +  SN
Sbjct:    1 MCLKVECPTCNKPTWMGCGMHIEAALSGVKEEDRCPKWKSGKHEASSESN 50
[Close]
BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: A0A067CK00_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CK00_SAPPC)

HSP 1 Score: 67.0 bits (162), Expect = 7.950e-11
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:  146 MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGKCPQAK 286
            MC K++CS C KATW GCG+HI SAL GV E++RC GW+ G+   A+
Sbjct:    1 MCHKISCSVCQKATWQGCGQHIQSALQGVPEAERCPGWRTGQHQDAQ 47
[Close]
BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Match: W2PEM3_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEM3_PHYPN)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  122 EEARLVSIMCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGK 271
            ++ +L + MC KV C  C KATW GCG+HID+AL GV+E +RC  WK GK
Sbjct:   38 KKNKLQAAMCIKVECPTCHKATWKGCGQHIDAALVGVKEEERCPNWKTGK 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10708.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D4Q6_CYCTE1.760e-1270.73Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3YN52_9EUKA2.430e-1261.70Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A067CBU3_SAPPC2.600e-1269.05Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
M4B7E5_HYAAE3.320e-1255.77Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S3XV58_HETAK4.970e-1268.89Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
G4Z7T4_PHYSP1.670e-1166.67Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4BSX2_9STRA1.790e-1166.67Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A225VXX0_9STRA5.650e-1158.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A067CK00_SAPPC7.950e-1157.45Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
W2PEM3_PHYPN1.120e-1056.00Uncharacterized protein n=1 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10708contigH-paniculata_contig10708:3884..6326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog112098.XP_008613633.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2D4ZD@1,2SWTN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1123
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10708.452.1prot_H-paniculata_contig10708.452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10708 4029..5519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.3837688-UTR-H-paniculata_contig10708:3883..40281622928774.3837688-UTR-H-paniculata_contig10708:3883..4028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10708 3884..4028 +
1691480614.8016472-UTR-H-paniculata_contig10708:3883..40281691480614.8016472-UTR-H-paniculata_contig10708:3883..4028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10708 3884..4028 +
1622928774.9032152-UTR-H-paniculata_contig10708:5519..63261622928774.9032152-UTR-H-paniculata_contig10708:5519..6326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10708 5520..6326 +
1691480614.8262498-UTR-H-paniculata_contig10708:5519..63261691480614.8262498-UTR-H-paniculata_contig10708:5519..6326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10708 5520..6326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.4144688-CDS-H-paniculata_contig10708:4028..40991622928774.4144688-CDS-H-paniculata_contig10708:4028..4099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10708 4029..4099 +
1691480614.8111198-CDS-H-paniculata_contig10708:4028..40991691480614.8111198-CDS-H-paniculata_contig10708:4028..4099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10708 4029..4099 +
1622928774.4270852-CDS-H-paniculata_contig10708:5419..55191622928774.4270852-CDS-H-paniculata_contig10708:5419..5519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10708 5420..5519 +
1691480614.8187416-CDS-H-paniculata_contig10708:5419..55191691480614.8187416-CDS-H-paniculata_contig10708:5419..5519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10708 5420..5519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10708.452.1

>prot_H-paniculata_contig10708.452.1 ID=prot_H-paniculata_contig10708.452.1|Name=mRNA_H-paniculata_contig10708.452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MCRKVNCSRCGKATWAGCGRHIDSALSGVEESDRCTGWKGGKCPQAKISN
SSCISS*
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mRNA from alignment at H-paniculata_contig10708:3884..6326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10708.452.1 ID=mRNA_H-paniculata_contig10708.452.1|Name=mRNA_H-paniculata_contig10708.452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2443bp|location=Sequence derived from alignment at H-paniculata_contig10708:3884..6326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGTCATTTTCAATTTTCAGAAGAATTAGTGACGGAGAACCTCAAGC
ACCTATCGCTGATCGTTTGCACCGTGTATTATTTCACCACGCAGTGCTAG
TCATTAGGAGTCGTGCTAGGAGAGGAGGCAAGGCTGGTCAGTATCATGTG
TAGGAAAGTGAATTGCTCCCGCTGTGGCAAGGCAACGTGGGCAGGTTGCG
GCCGACACATCGATAGGTAGGCGATATGTAATTATTGATGTGAAGAGGTG
CACACGTGGCCAGAGGGTACATTGTGAGTACCTTGTTGCGGACATTACAT
ATGACGTTGTGTATACCTACATTGTCAACCTCACCACAACATCCTAATAC
CTTGTGTAAATTGTGTTCGCCACGAAAATTAGAAAGTATTTGTCCGAGTT
TCAGAATGAGCTGACACAGAATAAAGTACCCACCCCTGATTATTCTATTT
ACGAGTGTTATTAGCAATCGTAGATGATCCGTTCATTCTGAATCTCAGGC
GAACACCTGTTAATTTTCGTGGTGAATACGCCAAGTATTCGTATTTGTAC
GGGGGGTGAATTTTAGTTTACACTGCGAATCTCACCACATCGTGAATGTT
GCAATATCCACAACAAGGTATCCCTCTGGCCACATGTGTGGGTAGAAATG
TTGACGGAGCAGGCACTCAACATCGATCCGAATTCATAACTCCTAGCAGC
TCCTTCCCTATTTTGGTGGGGGAGGCAATCGGGGGGTGCGGGTTATATTG
CAAAGTGATGTTGAAGTTCATGCCTCCATTGAGGTCCCTTCAACGTAAAA
TACGGGTGGTTTCATAGCCAGCTGGGGGCATCAAGCACCTCTCTGAGAAT
TGTTCATAGCCTTGATCATTTCGTTCACGTAATCCCCTATTCCTCCCTAC
AACTTGAACTGGCAACGATCCGAGACTAAACAACTCTGCCAATTCGGGCA
CTGGGTCCAACATTGTAAAGACACGTACGCATGAAAACCAGAAAGCAGTA
TCGTGGTGTGCAAGCAGCACAATGTGTGATGTAGAGTGATGGCGCCCGGA
AGAGAAGCAACACTCAGTGAGCGAAAATAACCGTCTGTTCAAGTCAGTTG
CCCCTGTTGTGTGATGCAGAACGTACAAAGTTAGCAAGTGCGGATACGCA
GATCGGCAATTAGGCATAAACTACGAAAAGGCTGCTTTGAACCGGAGACA
CTCGGACCGGCAAAGGACGGTGACACTTGCAGAATTGGAATTGCAATCGA
TCGAGGGTGACGTCTTGATATGACATGAGTTTGATACACTCAGTAATCTT
CCGAGAGTGGAAGCAGCGGAAAAGGTTTTTGCCTCGACCTTCCGGGGGTT
AAAAAAAAAAATGAGTTTGATGCGCTACGGTATTTATTGACACCCCTGCT
AATTTGTAAACATGGCAACGAAATTCATTTCATGACATATTTTTGTCAAT
GCTGGAAAGCAAGATTTGACGAATTTCTCTGCACGCTTTGCCTGTCACCC
TGCTCTGTGTTCATGGCCCTGATTATCATGGTGTAGCGCGCTGAGTGGAG
TGGAGGAGAGCGACCGCTGCACGGGCTGGAAGGGTGGAAAGTGTCCTCAG
GCCAAAATCAGTAACTCCTCCTGCATCAGTAGCTGAGCCTACAGTCAGTA
CACCGCTATGATTGATGCAGAGGCGAGACTACTGCGGATTTAAGTTGCAC
TATTTTCCCGGAAGAGTCAGAATGCTACATAGCTAAATTACCGGTGTCGT
CTGAAGAGTTTCTAAATTCATCGTACAGAGATACGGCTACTCCGGTATAG
TCCGTACTGTGTCCTCGACCCACCCACGACGACACTCTGCGCCCAGAGTA
GTTGCACTGAGATTCGTTTGTCACGAGTTGCTTGAGTACAGAATTGAAGA
GTATTCCAAGGCCACGCCGACGACAATGACCTCAGTGTATTTACGCCGAG
CGCTGGACTTGGGGATTCTCATGTCTATTTATTCGTGGTTTGGCGCTTCC
TGGTCGGGGGTTCATATACACAACGGTTCCTGCGGTAAAAACTATCTCGA
GTGAGTTACGTGCAAGGGTCTGAATAAGGATACCATGCAGGTGGCGGGAG
GGAATGGTTGATTGATTTGCTCAACAAAGCTCGTCTCGTATCCTGAATTT
TTTCATCAGGAATTCTCATTACGGGGTTGTTACAGGGATTTACCATCCGT
GGTGTTGTAATGGGGGACCATTGTACTTCAAATCATCATTAAAACGGCGC
CGCTCGGCACTAAAAAAACGTATCCCCGTCATGATATGGGGAATCATAGA
GTGAGAAGAGGCAACAACCATCCGGAACGTCGATGCTGTTGCGTGCCTCT
ACAAAAGCGGGCGCAAAACAGGTAGTACCCCTCCTGCTCTATCGGGTTGG
AGTTGTCAAGCGCCTTCACCTTTTTTGTAATATATGTTTTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10708:3884..6326+

>mRNA_H-paniculata_contig10708.452.1 ID=mRNA_H-paniculata_contig10708.452.1|Name=mRNA_H-paniculata_contig10708.452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig10708:3884..6326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTAGGAAAGTGAATTGCTCCCGCTGTGGCAAGGCAACGTGGGCAGG
TTGCGGCCGACACATCGATAGATGTGTAGGAAAGTGAATTGCTCCCGCTG
TGGCAAGGCAACGTGGGCAGGTTGCGGCCGACACATCGATAGCGCGCTGA
GTGGAGTGGAGGAGAGCGACCGCTGCACGGGCTGGAAGGGTGGAAAGTGT
CCTCAGGCCAAAATCAGTAACTCCTCCTGCATCAGTAGCTGACGCGCTGA
GTGGAGTGGAGGAGAGCGACCGCTGCACGGGCTGGAAGGGTGGAAAGTGT
CCTCAGGCCAAAATCAGTAACTCCTCCTGCATCAGTAGCTGA
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