mRNA_H-paniculata_contig10702.450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10702.450.1
Unique NamemRNA_H-paniculata_contig10702.450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10702.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10702contigH-paniculata_contig10702:1519..2163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10702.450.1prot_H-paniculata_contig10702.450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10702 1519..2161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.1457827-CDS-H-paniculata_contig10702:1518..16831622928774.1457827-CDS-H-paniculata_contig10702:1518..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10702 1519..1683 -
1691480614.6879265-CDS-H-paniculata_contig10702:1518..16831691480614.6879265-CDS-H-paniculata_contig10702:1518..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10702 1519..1683 -
1622928774.176364-CDS-H-paniculata_contig10702:2077..21611622928774.176364-CDS-H-paniculata_contig10702:2077..2161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10702 2078..2161 -
1691480614.7043328-CDS-H-paniculata_contig10702:2077..21611691480614.7043328-CDS-H-paniculata_contig10702:2077..2161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10702 2078..2161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.198001-UTR-H-paniculata_contig10702:2161..21631622928774.198001-UTR-H-paniculata_contig10702:2161..2163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10702 2162..2163 -
1691480614.7214587-UTR-H-paniculata_contig10702:2161..21631691480614.7214587-UTR-H-paniculata_contig10702:2161..2163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10702 2162..2163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10702.450.1

>prot_H-paniculata_contig10702.450.1 ID=prot_H-paniculata_contig10702.450.1|Name=mRNA_H-paniculata_contig10702.450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MKDEDQDKKEELRQDQDGGNQGRQEICEQLQHHRQSYNSFSSGGTQAGRV
GPCGEGSTSLHRMASSRGRGVGSVADAGRAGRK
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mRNA from alignment at H-paniculata_contig10702:1519..2163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10702.450.1 ID=mRNA_H-paniculata_contig10702.450.1|Name=mRNA_H-paniculata_contig10702.450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig10702:1519..2163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGAAGGACGAAGACCAAGACAAGAAAGAAGAATTGAGACAAGACCAA
GACGGGGGGAATCAGGGGAGGCAAGAGATATGCGAGGTAGAAATGTTTGC
GCTGCATTTTGGCAACGAACAGACGTAAAGATATCTCTTTGAAGAGGGAA
GAAATCATGCAGAATACTTGAATACGTCATGCGACGATAATGCAGTGAGC
GCAAGATGTACGTACATGGCGTGATCTATGAAAACTCGTGATTGTGATGT
CAAGTAGAAAGTATTCACTGAAAAATCTTGAAACAGTTGGGGCTATTAAG
AATATATATTCATTGTTTTGCAAAACGGAACTAACCACCACCCTCACTAT
CGTCACTACCGTTACCATCGCCAACACCACGAAAACGCTTGAAATAAACC
GTACAAAGTCATCGTCATAGTTGGCCACCTTCTCGGAATATTCTTTCGCC
GTACACGTTTTCTGTATGCCCCATGACCAGCAACTCCAGCACCACCGACA
GAGCTACAACAGCTTCTCCAGTGGCGGAACACAAGCTGGAAGGGTGGGGC
CTTGTGGAGAAGGTAGCACTAGCCTCCATCGAATGGCAAGCAGCCGCGGG
CGTGGCGTAGGGAGCGTGGCAGATGCGGGACGAGCAGGAAGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10702:1519..2163-

>mRNA_H-paniculata_contig10702.450.1 ID=mRNA_H-paniculata_contig10702.450.1|Name=mRNA_H-paniculata_contig10702.450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig10702:1519..2163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACGAAGACCAAGACAAGAAAGAAGAATTGAGACAAGACCAAGA
CGGGGGGAATCAGGGGAGGCAAGAGATATGCGAGATGAAGGACGAAGACC
AAGACAAGAAAGAAGAATTGAGACAAGACCAAGACGGGGGGAATCAGGGG
AGGCAAGAGATATGCGAGCAACTCCAGCACCACCGACAGAGCTACAACAG
CTTCTCCAGTGGCGGAACACAAGCTGGAAGGGTGGGGCCTTGTGGAGAAG
GTAGCACTAGCCTCCATCGAATGGCAAGCAGCCGCGGGCGTGGCGTAGGG
AGCGTGGCAGATGCGGGACGAGCAGGAAGAAAGCAACTCCAGCACCACCG
ACAGAGCTACAACAGCTTCTCCAGTGGCGGAACACAAGCTGGAAGGGTGG
GGCCTTGTGGAGAAGGTAGCACTAGCCTCCATCGAATGGCAAGCAGCCGC
GGGCGTGGCGTAGGGAGCGTGGCAGATGCGGGACGAGCAGGAAGAAAG
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