mRNA_H-paniculata_contig1070.449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1070.449.1
Unique NamemRNA_H-paniculata_contig1070.449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: D8LB32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB32_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 7.510e-84
Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:    1 MAPVHDEQWREVKKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVASSTADG 480
            MA   DE W E ++ RI EAFALFDKDKKGSV+QEE+STIMRYLGAYP+EKAM +E+LPDMQGDD +  V+YASFE KMLEI+ASRAWDPDPPE+LL+AFR +DE G G+IET+KM ELL+SKGTPFR KE+EAF+SVAKD ETGHIY+EDYVAS T DG
Sbjct:    1 MAMTQDEHWMEAQRKRIKEAFALFDKDKKGSVVQEEVSTIMRYLGAYPSEKAMTQEVLPDMQGDDVTAAVTYASFETKMLEILASRAWDPDPPEVLLRAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAKDTETGHIYFEDYVASLTTDG 160
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: F0YEV1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV1_AURAN)

HSP 1 Score: 211 bits (536), Expect = 2.320e-67
Identity = 103/158 (65.19%), Postives = 122/158 (77.22%), Query Frame = 1 
Query:    4 APVHDEQWREVKKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVASSTAD 477
            A   DE W    K +I EAF LFDKD+KG VIQEE+STIMRYLGAYPTE+AMVKEILPDM  D+ S  V Y  FE KMLEI+A   W+PD  E+LL+AFR  DE G+G+IE +++ E L++KGTPFR KE++AF+SVAKD ETGHIYYEDYVA  TAD
Sbjct:    3 AEARDENWYVETKKKIREAFQLFDKDRKGCVIQEEVSTIMRYLGAYPTERAMVKEILPDMMEDEPSAFVKYERFEPKMLEILAEGDWEPDSEEVLLQAFRVFDEDGKGYIEANRLREALITKGTPFREKEIDAFLSVAKDLETGHIYYEDYVALLTAD 160
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A7S3YMG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMG9_HETAK)

HSP 1 Score: 205 bits (521), Expect = 3.310e-65
Identity = 96/146 (65.75%), Postives = 122/146 (83.56%), Query Frame = 1 
Query:   40 KMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVASSTAD 477
            K +I +AF+LFDK+KK  VIQEE+STIMRYLGAYPTEKAMVKEILP++Q D+ +  V Y  FE+KMLEI+AS  WDPDPP+++L+AFRT+D  G G+I+ S+M ELL++KGTPFR KE++AFM+VAKD +T  IYYEDYVA  +AD
Sbjct:    4 KQKIKDAFSLFDKEKKFCVIQEEVSTIMRYLGAYPTEKAMVKEILPEIQDDEPTAFVQYDRFEQKMLEILASHEWDPDPPDVILQAFRTLDPDGLGYIDASRMKELLVTKGTPFREKELDAFMTVAKDMDTARIYYEDYVALMSAD 149
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A7S2UZH6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZH6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 8.740e-65
Identity = 97/149 (65.10%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:   16 DEQWREVKKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVA 462
            +EQW    K +I +AFALFDKDKKG VIQEE+STIMRYLGA+PTE+AMVKEILP++Q D+ +  VSY  FE KMLEI+AS  WDPDPP+++L+AFRT+D    G+I+ ++M ELL++KGT FR KE++AFMSVAKD +T  IYYEDYVA
Sbjct:   15 EEQWLLETKQKIRDAFALFDKDKKGCVIQEEVSTIMRYLGAFPTERAMVKEILPEIQEDEPTAFVSYERFESKMLEILASHEWDPDPPDMILQAFRTLDPEKNGYIDAARMRELLVTKGTAFRDKEIDAFMSVAKDQDTSRIYYEDYVA 163
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A6S8RCU5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RCU5_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.880e-63
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 1 
Query:    1 MAPVHDEQWREVKKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVASSTAD 477
            M    DE W    K RI EAF LFDKD+KG V+QEE++TIMRYLGAYPTE+A+VKEILPDM G++AS  V Y +FE KMLE++A   ++PD  E LL+ FR  DE G+G++E +K+ E L++KGTPFR KE+EAFM VAKD ETG IYYEDYVA  +A+
Sbjct:    1 MGEPRDETWYLETKKRIREAFQLFDKDRKGCVVQEEVATIMRYLGAYPTERAVVKEILPDMMGEEASAFVKYETFEPKMLELLAGGEFEPDSDETLLQCFRAFDEEGRGYVEATKLREALITKGTPFREKEIEAFMEVAKDEETGRIYYEDYVALLSAE 159
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A5D6YIQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIQ5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.130e-56
Identity = 85/142 (59.86%), Postives = 113/142 (79.58%), Query Frame = 1 
Query:   37 KKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVA 462
            +K+RI  AF +FDKDKKG V+QEE+ TIMRYLGAYP+EK ++K+ILP+MQ D+ S  V++  FE+KMLE++ +  ++PD  E LL AFRT+D   +G+IE   M ELL++KGTPFR KE+EAF+ VAKDP+TG IYYEDY+A
Sbjct:   24 RKLRIRAAFDMFDKDKKGCVVQEEVGTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTFERFEKKMLEVLYTNEYEPDTDEALLAAFRTIDAEKRGYIEADTMRELLITKGTPFREKELEAFLGVAKDPQTGRIYYEDYIA 165
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A8K1C2D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2D7_PYTOL)

HSP 1 Score: 182 bits (461), Expect = 6.930e-56
Identity = 88/142 (61.97%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:   37 KKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVA 462
            +K RI  AF +FDK+KKG VIQEE+STIMRYLGA+P+EK ++K+ILP+MQ D+ S  V+Y  FE+KMLE+M +  + PD  E LL AFR +D   +G+IE   M ELL++KGTPFR KEMEAF+SVAKDP+TG IYYEDY+A
Sbjct:   15 RKARIRLAFDMFDKEKKGCVIQEEVSTIMRYLGAFPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVLDADKKGYIEADVMRELLITKGTPFREKEMEAFLSVAKDPQTGRIYYEDYIA 156
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A2D4CC36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC36_PYTIN)

HSP 1 Score: 181 bits (458), Expect = 2.040e-55
Identity = 87/142 (61.27%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:   37 KKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVA 462
            +K RI +AF +FDK+KKG VIQEE+STIMR+LGAYP+EK ++K+ILP+MQ D+ S  V+Y  FE+KMLE+M +  + PD  E LL AFR +D   +G+IE   M ELL++KGTPFR  EMEAF+SVAKDP+TG IYYEDY+A
Sbjct:   17 RKARIRQAFDMFDKEKKGCVIQEEVSTIMRFLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVMYTNEYAPDTDETLLAAFRVIDTEKRGYIEADVMRELLITKGTPFREXEMEAFLSVAKDPQTGRIYYEDYIA 158
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: K3XBG4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBG4_GLOUD)

HSP 1 Score: 180 bits (457), Expect = 3.510e-55
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:   37 KKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVA 462
            +K+RI  AF +FDKDKKG VIQEE+STIMRYLGAYP+EK ++K+ILP+MQ D+ S  V+Y  FE+KMLE++ +  + PD  E LL AFR +D   +G+IE   M ELL++KGTPFR KEMEAF+SVAKD  TG IYYEDY+A
Sbjct:   23 RKLRIRAAFDMFDKDKKGCVIQEEVSTIMRYLGAYPSEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVLYTNEYAPDTDETLLAAFRVIDAEKKGYIEADIMRELLITKGTPFREKEMEAFLSVAKDAPTGRIYYEDYIA 164
[Close]
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Match: A0A6A4B9Y0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4B9Y0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.390e-54
Identity = 89/145 (61.38%), Postives = 113/145 (77.93%), Query Frame = 1 
Query:   37 KKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTEKAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAFRTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYEDYVASST 471
            +K+RI  AF +FDK+KKGSVIQEE+STIMRYLGAYPTEK ++K+ILP+MQ D+ S  V+Y  FE+KMLE++ +  ++PD  E LL AFR +D   +G+IE   M ELL +KGTPFR KEMEAF++ AKDP TG IYYEDY+A  T
Sbjct:  151 RKLRIRAAFDMFDKEKKGSVIQEEVSTIMRYLGAYPTEKDIIKKILPEMQEDEPSTFVTYDRFEKKMLEVLYTNEYEPDADETLLAAFRVIDTEKKGYIEAEVMRELLTTKGTPFREKEMEAFLAGAKDPPTGRIYYEDYIALLT 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1070.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB32_ECTSI7.510e-8475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YEV1_AURAN2.320e-6765.19Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3YMG9_HETAK3.310e-6565.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZH6_9STRA8.740e-6565.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8RCU5_9STRA2.880e-6361.01Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5D6YIQ5_9STRA3.130e-5659.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1C2D7_PYTOL6.930e-5661.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CC36_PYTIN2.040e-5561.27Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3XBG4_GLOUD3.510e-5561.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A4B9Y0_9STRA1.390e-5461.38Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1070contigH-paniculata_contig1070:21396..26933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.4
Seed ortholog evalue6.9e-65
Seed eggNOG ortholog2880.D8LB32
Preferred nameEFCAB2
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-27_005420.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons5
Model size483
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1070.449.1prot_H-paniculata_contig1070.449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1070 21396..26933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.0116026-CDS-H-paniculata_contig1070:21395..214831622928774.0116026-CDS-H-paniculata_contig1070:21395..21483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 21396..21483 +
1691480614.6354203-CDS-H-paniculata_contig1070:21395..214831691480614.6354203-CDS-H-paniculata_contig1070:21395..21483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 21396..21483 +
1622928774.0268002-CDS-H-paniculata_contig1070:23308..234061622928774.0268002-CDS-H-paniculata_contig1070:23308..23406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 23309..23406 +
1691480614.6459386-CDS-H-paniculata_contig1070:23308..234061691480614.6459386-CDS-H-paniculata_contig1070:23308..23406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 23309..23406 +
1622928774.0374198-CDS-H-paniculata_contig1070:24572..246801622928774.0374198-CDS-H-paniculata_contig1070:24572..24680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 24573..24680 +
1691480614.6541574-CDS-H-paniculata_contig1070:24572..246801691480614.6541574-CDS-H-paniculata_contig1070:24572..24680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 24573..24680 +
1622928774.0491083-CDS-H-paniculata_contig1070:25414..255401622928774.0491083-CDS-H-paniculata_contig1070:25414..25540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 25415..25540 +
1691480614.6636763-CDS-H-paniculata_contig1070:25414..255401691480614.6636763-CDS-H-paniculata_contig1070:25414..25540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 25415..25540 +
1622928774.06141-CDS-H-paniculata_contig1070:26870..269331622928774.06141-CDS-H-paniculata_contig1070:26870..26933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 26871..26933 +
1691480614.672144-CDS-H-paniculata_contig1070:26870..269331691480614.672144-CDS-H-paniculata_contig1070:26870..26933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1070 26871..26933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1070.449.1

>prot_H-paniculata_contig1070.449.1 ID=prot_H-paniculata_contig1070.449.1|Name=mRNA_H-paniculata_contig1070.449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MAPVHDEQWREVKKMRIAEAFALFDKDKKGSVIQEEISTIMRYLGAYPTE
KAMVKEILPDMQGDDASGLVSYASFEEKMLEIMASRAWDPDPPEILLKAF
RTMDEGGQGFIETSKMGELLMSKGTPFRTKEMEAFMSVAKDPETGHIYYE
DYVASSTADG*
back to top

mRNA from alignment at H-paniculata_contig1070:21396..26933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1070.449.1 ID=mRNA_H-paniculata_contig1070.449.1|Name=mRNA_H-paniculata_contig1070.449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5538bp|location=Sequence derived from alignment at H-paniculata_contig1070:21396..26933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGGTGCATGATGAACAGTGGAGGGAGGTGAAGAAGATGAGGAT
CGCAGAAGCTTTTGCTCTCTTTGACAAAGATAAAAAAGGTATCTTCGGAA
CAAGATCTTCATTGTGTGTTGTGTTTTCAACTATTCATGGTAGAATTTGT
GTAGGACTTGTTGATTCATTCACCACTACAGCACAATTGTACCCCTGCAT
AAAATATGTACAGTACCTCTCGTTTTACTGTCCTAGTGCTGTATATCGAT
ATTTCCTGCAAAATTGGGCTATTGGGTGGGGTATGACTTCGAGCTGCAGC
TTAGTGCCAGCCGTCGGATTTGGTTCAGGTGGTGCCTACGACGCGAGCAG
AGCCAGCACATATAACCTGCGGATACAATGTAGCTAAGCTTGTCGCTGTG
GACAACCAAGTGCTATAGCAAATCGCGGTGTTAATTGGCGGCGTCCTCTT
TACAGGTTATATACCGCACTCTGGTGCGACACAAGGAAATGCATCGAAAA
TCGCGACAACATGCTTGAGAGAAATCACGGTCATAAATAGACCGCGTAAT
TCAATGTGAGGACATTTTTCGGCCCGACGTGCATGACAAGGAGATGCAAG
TGACAGAATCATATAAAAAGAAAAATTCAAACCGCACTAAGATGTGGTTG
CGGTATACGCGCATATTTTCAGCGTTCAGTCACCGCGCTATGGCCATAAC
TTGCAATTTCCCTGTTGAGACCCTGCTGACCATCATTGCTAAATAGGACA
TGCACGAATTTGTATTGTTTTCATTAACAACCGTAGATAACCTACGCATG
AGAGATATCACACAAGACTCGCAATCGAGGCTACAGTACATCACACCCAG
CAGTCACTCACGAGACGGGTAACACAGTGGAGCAAAAGATCTGGGTGCAG
CGGTGAGCAGGATCGATGTCTTGACAACAATTTAAAAAGAAGCAGGGCGA
ATGGCAATGTTGTCTTCGAGGTTACCACTCGGCGTGATCGATTTGTATCA
TGTCTTTGATGAACGAGGGGGGTTTCGATCCTATTCCATCACAGGTGGCC
AGAGGGTACCTTTTCAGTGCCTTGTTGCGGATATTCCAACGTCCCTACGT
CGCGGGAGGCCGATAATGGGCACAAAACGTATTATGATATTGTACATTGT
CAACCTCACCACTATGGCCTAATACGTTGTGTAAACATTTTCAATCTCCC
CGCAGCGTGGACGTTGCAATATCTGCAACAAAGTACCCCTCTGACCATCT
GTGATGTCCCTACGATCATTTCGCCTTTGTATTATCTCAGACTAGAAGAA
ATAGCCTGTTGCCTACATATCTTCCTGCGTGTCCAATCTGTCCCGATGAA
TTCCATAATGTATATCCCCTGATCTCTGCCCAACACCTCACAATCCTTAT
TTTTTTGTGTCCGAGGCACCCGAAGTTATGACACTAGTACAGCGTTCAAT
CCGTCCCAGTAATTTGGAATTACACCTGAGATTGGAGGTTAACCTTTCCT
GGACATCAACAATTTTATATCCACCAATTTACTATTTTACAAGAGAGTAT
CGCTCCAATACTTCGGCCGCGAAGACGGTCAGCATATCCTTCGCCACTAT
TATGTCATGGGTCACCAGCCGCCGTACTAATCAAAAACGCTGAATGAGTA
TTCATGGAACCTACATGCCTCTCAATTCCATTATAGCTACATAAGCAGAA
ACCTTTCGTGGTGGCTCTACAGATTACGCCAAACAATTGCAAGTGGCACT
TTCAGACTCCCCTTGATCATTGAGCGACAATTTATTTGTGCCGTTACACC
TTGGAATTGTATGTATATATACACATATGACTTTGTGCACTCGGAACTAA
CTATTGATGTTTTCGCCAACGATTGTTTACGACATGTCTGTTGTCAACAC
CGGATCCATCCAGGCAGCGTCATACAGGAGGAAATATCCACCATAATGCG
ATACCTTGGAGCCTATCCAACAGAGAAGGCTATGGTCAAGGAAATATTGC
CAGATATGCAGGTGTACGAACGAGGCTATATCACCTAACTTTCAGCGCTG
AAAATGTTTTTTTCAAGTTAGCCCGGAGAGTGAAGGGCTCGAACCCAGTT
AAACACCTTTCTTTCTACAAGATGAGCTGTTCGCGGGAGGGGTGGGGCGG
TGGGAGTCGGTTGGACATAGCTATCATCTTACTGTAGTCCTGAGATGTTG
ATATCAAGCGGAGGTCCACCTGGTGGAGGTGATTTTACCCCGTCCTCTTG
TAGCTGATTTCTCTGCGAATACTCAGGAGAAGGCAATCTCAGAATCCAGC
GGAATGAAAACATGCCACGTTTAGGAATGGCCTCCGCCGATAGTGTGGCA
ACCCGCTGAATACGGTGTTGACTCCAGGGCGGCAGGCTTGCCCTCATTCG
GGGCGAGACACCACGTGTATCGTTAAAGCATACATGGTTAGCTTTTGAGT
TTGTATGGCGATTGCTGACGTTTCTACTTCCCGAGGGCGCATCCTAACCC
ATGGCGCGAAATCGATAACGCACAAGCACAACGGTGCTGCATAAAACTTT
GGATCATTCCCCTGCAGTGGGTGTTAGACCAATGCCTTTAGACTACTTTG
CGACTTATCGGAATACATACATGATTCACTATGGTTGTTGTGGTGGTAGA
CCTCGAGAACATGTTTTGCCGTTGGAGTATGTTTGACCCTCCCTTGCGTC
GAACGCCTTTACCACATACGAATTGTTGGTGGTGAGCAAACGAGCTTGTG
ATAGTCTGTACTCTGTCAGGCGACGGGATTCGACGCATCCGTCCCGGAGG
TCAAAGTACCGGTCATGCCATGCTCCACACAGCCAACATAAAACCGTAGT
GGGAGGAGAACGCCCGCTACAGGCTAAGACATGGCGAAGCTGTCATCTAA
AGTAGCGCGAATCTTCATCTCTGCTCGAAGAAAATACAATGCAGTTACCA
TATATTGATAGTGCGGGCAGCTAGACTGCCAAAGAAAACAAGATGAGATA
TATGACGACCGGATTTCGGGACGTTTCAAACCGGCCTAAACCATGGCATA
CTTGCCGTTAATCAATTTGCGTTCCTGATACATATTTTCAAAGATTACCT
TAACGATGATACCGCTGTTGTCTAATCAACTTCCGCCCCTTCCCTCTATC
GCTGAACGAACCGCTCTTGGGACAAAGGGAGACGACGCGTCTGGCCTTGT
GTCGTACGCATCCTTCGAGGAGAAGATGCTGGAGATCATGGCATCCAGAG
CTTGGGATCCTGACCCGCCAGAGATATTGCTAAAGGTAAAGCTTGATACC
TGAAGAATACGGTACTCTGGGCCCTGAAAAAAATTTGAAGCGACCCTTAT
AAGGAAAAATACATATTACAACGGATGTCGCCACTTTGGTATTATAAAGA
AAGCGATTCTTCGACGGGGCACGAGGGACGAGGGGCAGCATCTAATAACT
GAGGATGAATGAGGTTCGCGGTTGTTGGAAGTTGAGTGTTTGTCAAACAC
GCGCCCTTCACCGACTGATCAGTGTATGATGAACTGAAAGGGCGCCTGCG
TTACAAAAGTGACGCCTCAATCGCGGCAATGAGGTCGGATCTAATAGGTA
TACACACTTCCGGAAGACGAAAAACAAATACATACACAGGGCAGGGTGGA
ACCATCACCGGATGGTCCTAACCCTAAGATGACTCGAAGAATCTTGCATG
GAGTCCGTTTCCCGAGGAATTAGGGAAGGACAAGTTCAATTGACCGTATC
CTTGGAAATAGAAATGACCACATCTTGCGAACTCGATCTTTACTCATATA
CTTTTTCTCGAGTTGCGCTTAAACGTATTCGCCAGGCTATTTGCTCTCGC
TATTGCGCAATCGCACACGATTGATTACCCGTAGAGCCAACCCAGCGTTT
TCTCGCCCCCAAACTCAGCGTAAGCGTTCTTAAGCGAAAATCAGAATCCT
CCCGAAGTTGGTAGATTGTGACAGTATGTTGGCTACCGTATCTGGTGTTT
TTTTATGCTGTCGCATCAGGCGTTCCGAACCATGGACGAGGGTGGTCAAG
GGTTTATCGAAACATCCAAGATGGGGGAGCTTCTAATGAGTAAGGGAACG
CCATTCCGCACAAAAGAAATGGAGGCGTTCATGAGCGTAGCCAAGGTGCG
AGGATCACTATTTTGAACGAAGGGGAGGCGGATTAAGGGAGGGGGGATCT
GGCGGTAGTGCTTCTCCCGCGATGCAATACCCTGCATTTAGAAATACAAA
TATCACCATCTATTGGTATCTTGAGTAAAACGTTTCATTTTTTCCCATCT
TTGTAGTACTACGGGTCCCTCGATAAACGATGATTATTTTGAAGGTATCG
AGCGGCAAGCTTATTCTTCTTATTGAACCTTGTATCCTGCTTGCACTTCC
GGAATCGATTCAATTCGTTGATACTAATCCAACTATATATTGCAGCTACT
TGCTGTTTCCTCGGTACAACAGCTACCGCCATAGAGCTGTAAACGTGTGT
GAGGTGCTCATGTTGTTGTCTTTTTTACTGTTGAGTGAAGAAGCGCCCAA
AGGCACACGCCGGGAGGGGTACAAACTAATGTCGGGGAAATCTAACGTGC
AGAGACGATGCTGAGCATAAATCTACACATTTGATCTATTCGGTATTTTT
TGCTTCACTGGGAGCTGAGACAACCTTGATCCATCCTTTCTTGTCCTCAG
ACGACAGCTGGCCCAGCAAGAATGATCTACAACAACACCTTTCAGTCAAC
ATCTAGTATCGGCATCAGAACTGTCTTTGGTACCACAGAAAGAGACCCTA
GCGTGTTTAGCGCGAGCTGAATGATCGACCAGGTATTGAGCGGAAACGAT
GAAATTTCGAAACCTGGGAAGTTGGGGTGGATTATTGAAGGACGTCGAAA
GTCCCACGTCAGAAATATATGGAAGGGGTTGATTCTGTTGATATGGCTCG
GAATTTCTGTTAGATCACATTTTGAATTTTTTCATGAAGAGCGTTTCGGC
TCTCGAAATGTTCCACCCTATATTTCCAGATTTTCAGATTTCATCCTTTC
CGCCATAAGCGTGCTCGCTACTAGGGACCTTACGGCCGTTCTAAACAATT
CAGTTTTCCCCCCTTTTTATCGACTTTCCGGAAGTCGAAAATCGCAATAA
TAACGAGCTCCAATTTGAAAGATTATACCTAAGCCTACGGAACGTAGAGG
ACAGCATCCACTGTACACAGCCCCACGATTGTTTTCAAACTTGAAGCTTC
CTATCGCGTTCTTTTCCGATTTTGCAAAACGGAAAAAGTGGGAAAAAGTG
GGGAGAACGATCTCATCTAGCATGGCCTTCCCTCACTACCGAAACTATTT
CTTCTCAATTATGTTTTCAACTTGCTTCGCATCCGTGCATGACCATTGAG
CATCCTTTCTTTTTCTTCTAATAATAGTTTTATCTTCACTGCGTATCTTC
CTTCCGAACATAAACGCACACACAGGACCCTGAGACAGGACACATCTACT
ACGAGGACTACGTGGCTTCTTCGACCGCTGACGGATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1070:21396..26933+

>mRNA_H-paniculata_contig1070.449.1 ID=mRNA_H-paniculata_contig1070.449.1|Name=mRNA_H-paniculata_contig1070.449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig1070:21396..26933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGGTGCATGATGAACAGTGGAGGGAGGTGAAGAAGATGAGGAT
CGCAGAAGCTTTTGCTCTCTTTGACAAAGATAAAAAAGATGGCGCCGGTG
CATGATGAACAGTGGAGGGAGGTGAAGAAGATGAGGATCGCAGAAGCTTT
TGCTCTCTTTGACAAAGATAAAAAAGGCAGCGTCATACAGGAGGAAATAT
CCACCATAATGCGATACCTTGGAGCCTATCCAACAGAGAAGGCTATGGTC
AAGGAAATATTGCCAGATATGCAGGCAGCGTCATACAGGAGGAAATATCC
ACCATAATGCGATACCTTGGAGCCTATCCAACAGAGAAGGCTATGGTCAA
GGAAATATTGCCAGATATGCAGGGAGACGACGCGTCTGGCCTTGTGTCGT
ACGCATCCTTCGAGGAGAAGATGCTGGAGATCATGGCATCCAGAGCTTGG
GATCCTGACCCGCCAGAGATATTGCTAAAGGGAGACGACGCGTCTGGCCT
TGTGTCGTACGCATCCTTCGAGGAGAAGATGCTGGAGATCATGGCATCCA
GAGCTTGGGATCCTGACCCGCCAGAGATATTGCTAAAGGCGTTCCGAACC
ATGGACGAGGGTGGTCAAGGGTTTATCGAAACATCCAAGATGGGGGAGCT
TCTAATGAGTAAGGGAACGCCATTCCGCACAAAAGAAATGGAGGCGTTCA
TGAGCGTAGCCAAGGCGTTCCGAACCATGGACGAGGGTGGTCAAGGGTTT
ATCGAAACATCCAAGATGGGGGAGCTTCTAATGAGTAAGGGAACGCCATT
CCGCACAAAAGAAATGGAGGCGTTCATGAGCGTAGCCAAGGACCCTGAGA
CAGGACACATCTACTACGAGGACTACGTGGCTTCTTCGACCGCTGACGGA
TGAGACCCTGAGACAGGACACATCTACTACGAGGACTACGTGGCTTCTTC
GACCGCTGACGGATGA
back to top