mRNA_H-paniculata_contig10687.441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10687.441.1
Unique NamemRNA_H-paniculata_contig10687.441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10687.441.1 vs. uniprot
Match: D7G9B3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B3_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.740e-64
Identity = 109/170 (64.12%), Postives = 139/170 (81.76%), Query Frame = 2 
Query:   38 TPLEILGSGDMGSFGVIQAAVPLGTRKVALQTLDDLALLFVDMRSTLLVRMAAAGAVMDELCLRTETFEQVSMVYGSPGELVVCAPQFLKVGGAMEHAGMLDGDLITHINGEAVAPDAAEDFVWEAKAVKGVRLLDITFLRATGESSARGYPWHEALAWWQSGVRRHMLE 547
            +PLE+LG G MGS  ++Q AVPLGTRK++LQ LDDL+L FVDMR+TLL+R A AG ++ E+CL+ ETFE+ ++V G PGE+VVC PQF+K   A++ AG+LDGDLITHING+ V+ D  ED  W  K +KGV+LLD+ FLRATGESSA GYPWHEALA+W+SGVRRH+L+
Sbjct:   14 SPLEMLGEGAMGSHRIVQTAVPLGTRKISLQILDDLSLFFVDMRATLLLRTATAGPIVGEVCLKAETFEE-AVVSGDPGEVVVCVPQFVKPRSALQEAGILDGDLITHINGQRVSVDRPEDLFWSLKPIKGVQLLDLAFLRATGESSAEGYPWHEALAFWKSGVRRHILD 182
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BLAST of mRNA_H-paniculata_contig10687.441.1 vs. uniprot
Match: A0A6H5KXH0_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH0_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.120e-57
Identity = 111/191 (58.12%), Postives = 140/191 (73.30%), Query Frame = 2 
Query:   38 TPLEILGSGDMGSFGVIQAAVPLGTRKVALQTLDDLALLFVDMRSTLLVRMAAAGAVMDELCLRTETFEQVSMVYGSPGELVVCAPQ-----------------FLKVGGAMEHAGMLDGDLITHINGEAVAPDAAEDFVWEAKAVKGVRLLDITFLRATGESSARGYPWHEALAWWQSGVRRHMLEAASV 559
            +PLE+LG G MGS  ++Q AVPLGTRK +LQ LDDL+L FVDMR+TLL+R A AG +MDELCL+ ETFE+ ++V G+ GE+VVC PQ                 F+K   A++ AG+LDGDLITHING+ V+ D  ED     + VKGV+LLD+ FLRATGESSA GYPWHEALA+W+SGVRRH+L+ A +
Sbjct:   14 SPLEMLGEGAMGSHRIVQTAVPLGTRKTSLQILDDLSLFFVDMRATLLLRTATAGPIMDELCLKAETFEE-AVVCGNLGEVVVCIPQLYKIPHSVVVDCSPLPQFVKPRSALQEAGILDGDLITHINGQRVSVDWPEDHFLSLQPVKGVQLLDLAFLRATGESSAEGYPWHEALAFWKSGVRRHILDDAEL 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10687.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B3_ECTSI1.740e-6464.12Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5KXH0_9PHAE3.120e-5758.12Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10687contigH-paniculata_contig10687:5654..8632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-03_004350.1
Exons4
Model size1253
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10687.441.1prot_H-paniculata_contig10687.441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10687 5670..7944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.3233883-UTR-H-paniculata_contig10687:5653..56691622928772.3233883-UTR-H-paniculata_contig10687:5653..5669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10687 5654..5669 +
1691480613.717663-UTR-H-paniculata_contig10687:5653..56691691480613.717663-UTR-H-paniculata_contig10687:5653..5669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10687 5654..5669 +
1622928772.4347115-UTR-H-paniculata_contig10687:7944..86321622928772.4347115-UTR-H-paniculata_contig10687:7944..8632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10687 7945..8632 +
1691480613.7692692-UTR-H-paniculata_contig10687:7944..86321691480613.7692692-UTR-H-paniculata_contig10687:7944..8632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10687 7945..8632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.338753-CDS-H-paniculata_contig10687:5669..57891622928772.338753-CDS-H-paniculata_contig10687:5669..5789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 5670..5789 +
1691480613.727571-CDS-H-paniculata_contig10687:5669..57891691480613.727571-CDS-H-paniculata_contig10687:5669..5789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 5670..5789 +
1622928772.3641865-CDS-H-paniculata_contig10687:6122..62841622928772.3641865-CDS-H-paniculata_contig10687:6122..6284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 6123..6284 +
1691480613.73573-CDS-H-paniculata_contig10687:6122..62841691480613.73573-CDS-H-paniculata_contig10687:6122..6284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 6123..6284 +
1622928772.3849237-CDS-H-paniculata_contig10687:7090..72101622928772.3849237-CDS-H-paniculata_contig10687:7090..7210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 7091..7210 +
1691480613.7452545-CDS-H-paniculata_contig10687:7090..72101691480613.7452545-CDS-H-paniculata_contig10687:7090..7210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 7091..7210 +
1622928772.4080327-CDS-H-paniculata_contig10687:7797..79441622928772.4080327-CDS-H-paniculata_contig10687:7797..7944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 7798..7944 +
1691480613.7587302-CDS-H-paniculata_contig10687:7797..79441691480613.7587302-CDS-H-paniculata_contig10687:7797..7944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10687 7798..7944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10687.441.1

>prot_H-paniculata_contig10687.441.1 ID=prot_H-paniculata_contig10687.441.1|Name=mRNA_H-paniculata_contig10687.441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MGADPGPTPLEILGSGDMGSFGVIQAAVPLGTRKVALQTLDDLALLFVDM
RSTLLVRMAAAGAVMDELCLRTETFEQVSMVYGSPGELVVCAPQFLKVGG
AMEHAGMLDGDLITHINGEAVAPDAAEDFVWEAKAVKGVRLLDITFLRAT
GESSARGYPWHEALAWWQSGVRRHMLEAASVL*
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mRNA from alignment at H-paniculata_contig10687:5654..8632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10687.441.1 ID=mRNA_H-paniculata_contig10687.441.1|Name=mRNA_H-paniculata_contig10687.441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2979bp|location=Sequence derived from alignment at H-paniculata_contig10687:5654..8632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTCCGCATGGGATGGGGGCAGACCCCGGTCCAACGCCTCTAGAGA
TACTGGGTTCGGGGGATATGGGATCGTTCGGGGTGATTCAGGCGGCGGTT
CCGCTTGGAACACGGAAGGTGGCGCTTCAGACGCTGGTAAGAGATGTTAA
GACAGTCAGGAAGCATTTTTTTTTTTCTTTTGTTCATGATGAAATTAATC
AAGTTTTTAGTATCTGAAAATCGTTTCCGATTTTCTCCCGTTTGCACGAT
CCATTTTTGTTTTTTCTACACTTTTTCCTGTCGGGGGGCGGGTTGGACTA
CTGTGTACATACCTATATGCACGGTTTCAATTTGCTACTGTACTGTACTG
TACTGTACTGTACTGTACTGTACTGGTCATACTCCTGATCCTTTTGTAAA
GGTCAAACGACACTTGTTGTCACGCCCCCCCGTCCCCCCCCCCCATTTAA
TTTTTTTTTTTTAAATCAGGACGACCTCGCGTTACTGTTCGTTGATATGC
GGTCCACGTTGCTGGTGAGGATGGCTGCCGCCGGTGCCGTGATGGATGAG
CTTTGCCTCAGGACCGAGACGTTCGAGCAAGTATCTATGGTCTACGGCAG
TCCAGGGGAGCTGGTAGTCTGCGCCCCTCAAGTGAGCGAAAATCACCGCA
GTGTGTGTGTGTGTGTGGGGCGGGGGGGGGGGCATACATACTCATGTTTC
CCATGCCGTAGTTTTACAACATTGACCACGTGTGCTCGGGAGGACGGAGC
TTCGAGAAACGGGGAGAGACGGGGTACTTGAGACAACGTATGCCGCTCTC
TCTCGACCATGAACTCGAATCCCTACAATGCCGAGACGGAGCTTGCTGCG
TTCTCAACGATTGACCAGGGGAGGGGGATGGGGGGGTACCCATGAGAATC
CATGTCGTAGTATCTCAACCAATGCTGGGACGGAGCAGGAGGTCATGTCG
GGTTTTCATCCGCTAGGCTGTGTTTCACAAGGTCACAAATCAGGATATCC
GCGTCTCTGTGCCAATCGGATTCTGTCTTTGGATTGTGGGCATTTCTGGG
TAACCAAGTGTTGCATATTCGATGGCAGGGGCGGGGGGGAACCTGATACA
ATACTCACTCGACGTGTGAGCTGTCATTAATACGTCAATCCTCTGTCAGA
ATCCTTGAATTTGTTTTTCAGATATCTCTCAAATTTCATGATTTTAACAC
AATTTGCGTTAAGGGTTTTTTAATAAGGAAATAGGTGAGCGAACGTGTGA
CCGTAGGGAGACCAGCTTTCCAACACGCCTATTCACAAGGCTGTGGATGC
TGTACACCATGCGTGACGAATCAATGCAACAAGATACAATCTGGATCTCT
CTGGTTCTGTTTTGCTCTCTTCCTCTGTTATGTTATGTCATGTTCGGTTT
CTTCTATTCTTATTCGGTGTGTTTCTGTTCTCGACAGTTTTTGAAGGTAG
GGGGTGCGATGGAGCATGCTGGGATGCTGGATGGAGATCTCATCACACAC
ATCAACGGCGAGGCAGTAGCCCCCGACGCCGCCGAAGATTTCGTCTGGGA
AGCCAAGGTGACATTTGAAATATTCAAAATGTATATGCTTCTATATGATT
ATATACTTCCTCTGTGCCTCAAATACAATCGATGACGTTTGGCAGATCAT
ATCTTCAGATCTAAAACTCTTCAGATGCTGCGATTGGGATCGTTGGAAAG
CTCAAGTCTGATAGACACATATTTTTTCCGAACTCTATGATAATATCTGG
CCGCTCGTGTGTAGTAACCGGAATTTGCAACCCCCAAAAGATAGGTTTGG
TCACGAGCAGTCGTGAAGAATGACGAATATGTCGACAGAAGGCGTCCATC
AGCTCTAGACAGTTGGTTGGCGCATCTTAGATGCGTGGGGGGGGGGGGGG
GGGTCTGTTTGGGGGCTTTTTATCTAGGATTTAGTGTGGAACATTGAAGG
GGCAAATACCAGCTTTTCTCAAAAAAGCCAAATAATAGGCAGGCATTCAA
CAGCCTGGTTACGGGGTGAGAATGCCCCTCAAGGGTTATTAACTGTTTAT
TCTGATTTGATCGAATGTTACCCCGATGGTGTTTAATGTTGTTCTTTTTG
TTCAATTTATCCATTCATGTTTGTGTGTGTGTTTATGGTCTTAGGCGGTG
AAGGGTGTGCGACTACTGGACATTACTTTCTTACGCGCCACCGGAGAAAG
CAGTGCTCGAGGTTACCCGTGGCATGAGGCCTTGGCGTGGTGGCAGAGCG
GAGTTCGTCGGCACATGCTCGAGGCCGCGTCGGTACTTTGAAAAAAAAAA
CATTTTGCTCGCGCTTGGACTTTCGAGGAACGAAGAAACCCTCAGACTCA
AATATGTGGAACCTTGCCTCGTTATTCATGTAATTTTGTTGATAAATGTG
AACAATTAAATTTTGAGGTGAGCTGCGTAACTAATTAACCACTCTCTTTA
AAAACGTTGCTTCTTGTTGTTGTTTTAAACGTCATTAGGCTGATTTCCGA
CGTGAAATTTATAGATTACGATGGAGTATCAGCAGCAGCAGCAGCAGCAG
TTAAAAACGCAGAATAGAGCTCTTGTGTTGTTTGATTCCGTATAGGAAGG
GAGAAAGGAGGCACATGACGAGGCAATAATACCGAGTATTTTTATTATCC
ATAATTTTTCGAGTCTATTACACGGAATCGAGTCTACTAAACGGGCAGTA
AGTACGCTAGTCACTGTTGGTAGGATTGTTGATATGACTCTGACGACCTT
CTGGGGTCAGTTTTATGTTTGAAATTTATTTGAAGTTCATTTTCTGCTAA
TTTTGAATTTTTTGGCTTCCTTTTGACTGTCCCGCTTGGTTCTAGGTAAC
AAAGTGTAACCAAATAAACAGGGATGTATATACTTTGTTCTATGTGCCCG
CACATTTTTATTTTTTTTAACCCTCGGAAGGCTAAGGCAAAAACCTTTAT
CCGATGCTTCCATACCGAAGTATTTCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10687:5654..8632+

>mRNA_H-paniculata_contig10687.441.1 ID=mRNA_H-paniculata_contig10687.441.1|Name=mRNA_H-paniculata_contig10687.441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig10687:5654..8632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCAGACCCCGGTCCAACGCCTCTAGAGATACTGGGTTCGGGGGA
TATGGGATCGTTCGGGGTGATTCAGGCGGCGGTTCCGCTTGGAACACGGA
AGGTGGCGCTTCAGACGCTGATGGGGGCAGACCCCGGTCCAACGCCTCTA
GAGATACTGGGTTCGGGGGATATGGGATCGTTCGGGGTGATTCAGGCGGC
GGTTCCGCTTGGAACACGGAAGGTGGCGCTTCAGACGCTGGACGACCTCG
CGTTACTGTTCGTTGATATGCGGTCCACGTTGCTGGTGAGGATGGCTGCC
GCCGGTGCCGTGATGGATGAGCTTTGCCTCAGGACCGAGACGTTCGAGCA
AGTATCTATGGTCTACGGCAGTCCAGGGGAGCTGGTAGTCTGCGCCCCTC
AAGACGACCTCGCGTTACTGTTCGTTGATATGCGGTCCACGTTGCTGGTG
AGGATGGCTGCCGCCGGTGCCGTGATGGATGAGCTTTGCCTCAGGACCGA
GACGTTCGAGCAAGTATCTATGGTCTACGGCAGTCCAGGGGAGCTGGTAG
TCTGCGCCCCTCAATTTTTGAAGGTAGGGGGTGCGATGGAGCATGCTGGG
ATGCTGGATGGAGATCTCATCACACACATCAACGGCGAGGCAGTAGCCCC
CGACGCCGCCGAAGATTTCGTCTGGGAAGCCAAGTTTTTGAAGGTAGGGG
GTGCGATGGAGCATGCTGGGATGCTGGATGGAGATCTCATCACACACATC
AACGGCGAGGCAGTAGCCCCCGACGCCGCCGAAGATTTCGTCTGGGAAGC
CAAGGCGGTGAAGGGTGTGCGACTACTGGACATTACTTTCTTACGCGCCA
CCGGAGAAAGCAGTGCTCGAGGTTACCCGTGGCATGAGGCCTTGGCGTGG
TGGCAGAGCGGAGTTCGTCGGCACATGCTCGAGGCCGCGTCGGTACTTTG
AGCGGTGAAGGGTGTGCGACTACTGGACATTACTTTCTTACGCGCCACCG
GAGAAAGCAGTGCTCGAGGTTACCCGTGGCATGAGGCCTTGGCGTGGTGG
CAGAGCGGAGTTCGTCGGCACATGCTCGAGGCCGCGTCGGTACTTTGA
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