mRNA_H-paniculata_contig10676.436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10676.436.1
Unique NamemRNA_H-paniculata_contig10676.436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10676.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10676contigH-paniculata_contig10676:3678..7747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size442
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10676.436.1prot_H-paniculata_contig10676.436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10676 3779..7640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.050067-UTR-H-paniculata_contig10676:3677..37781622928771.050067-UTR-H-paniculata_contig10676:3677..3778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10676 3678..3778 +
1691480613.2236562-UTR-H-paniculata_contig10676:3677..37781691480613.2236562-UTR-H-paniculata_contig10676:3677..3778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10676 3678..3778 +
1622928771.0993564-UTR-H-paniculata_contig10676:7640..77471622928771.0993564-UTR-H-paniculata_contig10676:7640..7747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10676 7641..7747 +
1691480613.2500963-UTR-H-paniculata_contig10676:7640..77471691480613.2500963-UTR-H-paniculata_contig10676:7640..7747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10676 7641..7747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.072256-CDS-H-paniculata_contig10676:3778..39831622928771.072256-CDS-H-paniculata_contig10676:3778..3983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10676 3779..3983 +
1691480613.2327862-CDS-H-paniculata_contig10676:3778..39831691480613.2327862-CDS-H-paniculata_contig10676:3778..3983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10676 3779..3983 +
1622928771.0870373-CDS-H-paniculata_contig10676:7611..76401622928771.0870373-CDS-H-paniculata_contig10676:7611..7640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10676 7612..7640 +
1691480613.2413437-CDS-H-paniculata_contig10676:7611..76401691480613.2413437-CDS-H-paniculata_contig10676:7611..7640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10676 7612..7640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10676.436.1

>prot_H-paniculata_contig10676.436.1 ID=prot_H-paniculata_contig10676.436.1|Name=mRNA_H-paniculata_contig10676.436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MKTQARKKDDCAMTLLAFGVGFSHQLGLDAGEGGDYGRGRRRLGRHQQPQ
SGQQQESSTKATSNDAEKGAVARIIHT*
back to top

mRNA from alignment at H-paniculata_contig10676:3678..7747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10676.436.1 ID=mRNA_H-paniculata_contig10676.436.1|Name=mRNA_H-paniculata_contig10676.436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4070bp|location=Sequence derived from alignment at H-paniculata_contig10676:3678..7747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATAGAGGGTGAGGTACCAAGAGGATCCAAGAATTTGTACGGGCTCA
TCTCTGGTCACCACCCCGCGCTGCTGATAGCCCGCACTCAGCGGGGCAAA
CATGAAAACGCAGGCGAGGAAGAAAGATGACTGCGCAATGACGTTGCTGG
CCTTCGGTGTAGGTTTCTCACACCAGCTTGGACTGGACGCTGGAGAAGGC
GGGGACTATGGCAGAGGGCGGAGGAGACTTGGGCGTCACCAGCAGCCGCA
GTCGGGGCAGCAGCAGGAATCGTCGACGAAAGCTACTAGCAATGATGCCG
AAAAGGGTAGGTAATCCATGCATATCAGGTAATGTAAACGGTGGAAATTC
ATGGGTGTTGCGGCATTACAGCAACAGCGGTTAGGTTTGCAATGGGCCAG
AGTTATCGTCTTTATTAGAACTGCATTCTATTCACTGTGCTGTACTGTAC
TGTCGGTAATTTGATGGGCTTCACTTCTGTACTGGGTAGAGTGCTAATTA
TTATTGCCTGTGCCCCTTCGGGAGTGCAGGTCCAACACAACAAGAAATTG
CTTATGTGTCCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTTTCT
CTCTCTCTCTCTCCCTCTCTCTCTTTCTCTCTCTCTCTAATGCTATTATC
ATGGAAGAAAGCGACAGCACAATGAATGGCGGGGTCGCAACTCTGTCCAA
TGCTGACTCACAAAAAAGCGTTCAAGCGATAATAGTGGCACATTATCGCT
GCACATTGCTGCAGAGCGTCCTGTAAATAGCACAAAATGAGCGTCTGTGT
TTGTGTGTTTGTCCACGTGTACCACGACATGTTGTTTGAGAGATAAAAAA
ATCTTTTCTCGAGCCGCAAAGAGTACGACATGCGTATGGTACTAGGCTCG
GTGTCTGCTGCGTACAGCACGTGTTGGTTGGTTCCCTCACGACTAGAATT
GTATTGTACCCTATTGATAAGTGCTTCGAAGAACTTCCCGACGTTTTTAA
GCTTGGCCAATTTTATTGTGTGGGGATGGTTGGCAAAACACACACATCTG
CACTGCATGACGCACCACCTCTTCCTATTTTTTTTTTTTTCAAGAGACCA
TCTATTTTTCTCTCACTTTTCATCTCTTTTATAATAACTAAAGTTGATCT
TATGGTTACACTGTCAAAGAGCTGGATACTGTTCACGTGCTTACGAGATA
TCAAGTCGTGTACCCGTTGTTCTTATAACAGACGTCCTCTGGATATAGAA
CCAACCATTTGATCTCTGTTATCCAACACACATAGGTTGCTGTGCCCTGT
CACGGACTACGCCATACAGTACTCTCAGAACGGTATTGCTGGAGTGGTAG
CTGTTCTCCTTCGTCTGTGGTCTGATCTCTTGTATTAGCTGGCTATTGCT
GTACTTTTCAGTGTCAGCCCTGGGTTGAGGCAAGTCTGACAGCTGCGGGG
GAGGCATCACGCGGTGTGCTTACTGCTGCCAACTCCAATTGAGGCTACAT
TACATAACCCCGGGGATAGGGGACGGAGCCATCACTTTAGACAATGACTC
ACGTCCCCCAATCAATATCTCGTAACATTGGCCCACCCTGCGTTTCGGGA
CACTCCCTCATTCCGAACTAAAGTGCACCCGGATAAGCACACACGCCACG
TACATGGCCGAGATGTTCCCGAAAGCCCAGACACTACTTATTTCAGGCGG
CGTTTCCACGAGAGTATTCCAACTATATCGCCGCCTGAGGAACGAAAGCA
CCGAATTGACCTTCGGTGGCGCGAGCAGTTTGACTTGGGGCACACGCATG
TTTTGGCGACTTGCGGGTACATGACCAAACTCCGCAAAACCTCCGGGGAG
AGAAAACACAGAGGGCCAAGATATCTAACCGATACAGTCCCGGGTGAGAT
CCTCCGTGGGAATGGCTATGCGCGCAAGGCATTATGCGGGTAAATCATAC
CCGGGCACAAAACCCTGGACCTTATTTTACTCAGCCAGACCTCTAATCGG
CGTCCCCTCGTACCAGAATAAAATCCGGCACCTCGTTGGCCACTCCGACT
GGTCCACCCAAGGATCAAAACCCGTCTCTCAGTCCGAAAAACCCTTGCCC
ACACCCGTACCCTCCCATGCTTGATACCGGCCTCATGCGACTTAAGGTCG
CCCTATGCCCTCCGGCCGTATCGATTCCTCTTTGTTACCCACGGAACTTC
TCCAAACTCATCCGTCATACCATCACTCGCTTTACGCTCTTGATTCGATT
GAACATCTGATAATACCAATACCTCGGATCTGCCATCACGTCGGTGCTGT
ATAAATCCTCCCTCAACGCGACGTTAAATCGCTTCTGTTTCCACGAAATT
GACAGTATACGGTAGCCTTTCTTCCCTCTCCACCTGGTGAATAATCCCAA
GCTGCCATCCTCTGGTTGCCATCTTGAAGAATATGTACGCCCCCTTCATG
TCGTCCGTCAGCAATTTCGGCCAAACCTTGATGGAAGCATCTATCACATA
ACCAGAGGGCATGTAACGGTCACCGGAAGAGAGAGCTTTCAGCCGGCGTG
CTGCCAGAGTGCGGAATTTACGATACGTCTTACTATCGGCGGCTGTTTGC
GGTTTTTCGTTACCAGATACCCAGTAATTTCGCACTGCAAAACCACACTG
ATCAATACAACGCTCATTCTCCCAAGTTGCGTGTTCCTGATTTTCCCACC
GAGTTTTGTATTGCACCGAAAGGGCTCCTCCCGATCCTCTACTGACTCTA
TAGGCTTCTATCTCTTGCGGTGTCGCTTGTTCGACATCGAGTTCTATATT
TACATCGTCGGGAGTTAAATGAAAGGGGGGGGTGAGTTCCGAGAATTTAT
TGAGTACGTACGAACATATTTCCCATGGCAGGAATTCCGATCGTTCTCTC
TTACCAACTCGTACGCCCTACGTTACTTGTCCACCGTCAGCTGCAAGTAC
TCTAATTCGTCCCTTTTCAAACTTTGATTTCCATGGACTTGATATTTTGG
GACCAAAATCGCCATGGAAACTCGTGGATACCTACCGATATGCACTTCGT
TCGGAGCCAATCCCGCTCCTTAACTAATGTTGTTATTGTAGGCATACACT
AGTTGCAATAGAAACTCGTTCCAGTCATCTTGCTGTGACCCGATGAAGTG
TGCTAATATCTGACAAACCGTATGATTGAGACGTTCAACACAGCCATTCG
TTTACGCGTGGAAAGAACTGGTCAGAAGTTTCTTCGAGCCCAACATGTGG
TACACTTCTTTCGCCACTTTGGCGGTGAATGCCGCTCCCCTATCCGACAG
TAACATCTGTAGACAACTCCAACGTGCGACGTAGTCATTTGCTAAAAACT
GAGGCACAGCCTTTCGCAGTTTTATCTTCGTCGGACAACGCATATGGTTC
GGCATGGCGACTAAATAAATCAACTCTCAGCAAAACGTATGAGTGATGAC
GTGTCGTTTTGGGCAAAGTTCCGAGGAGATCGAACGAGACCATCTCCCCC
AGGCCGGATGGAAGCGGGAGTGAAATGAGGGGCCAACGGGGCAAGCGACG
AGACAGTTTCGCCGCTTGACAGACGAAACAGTTACGCACCCACCATTTCA
TGCTTGCTGACATTCCGATCCACCAGTTTTATTGTTCGAGCGTCACTAGA
GTAACGTGAACTCCTAAATGGAAACCTTCTTTGTGCATGCAGTCCATGAC
CCACGAGCGTAAGAGAAACGGTAAGTATACGCGGGTGGGCTGATTGTTTA
GCAAAAGTTGAAATTTTCCACTTGCACGGTTAGGTCGAGATGTGGGCTTG
ACCATGGATCGTTTCACTAAATGGTGTCGATTAGCATTTAATGTTACCAG
AGTACCCTGCCGATCTAAACGGCAAACCTCCTCCACCTCGAAATGCCTTG
CTGTGGTCGCCGTCGTCACAAAATTTGGAACCAGGAGCGGTTGCTCGGAT
AATACATACTTAACGACGGTGCTAGCCAATGGGTCTTCCTGTTGCTCAGC
CGCCAAGTCGGCCGCGCTCCGCTGATACAATCGCTCCCCCAAAAGGCGCG
CTTGTCGCTCTTGCCCTTCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10676:3678..7747+

>mRNA_H-paniculata_contig10676.436.1 ID=mRNA_H-paniculata_contig10676.436.1|Name=mRNA_H-paniculata_contig10676.436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig10676:3678..7747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACGCAGGCGAGGAAGAAAGATGACTGCGCAATGACGTTGCTGGC
CTTCGGTGTAGGTTTCTCACACCAGCTTGGACTGGACGCTGGAGAAGGCG
GGGACTATGGCAGAGGGCGGAGGAGACTTGGGCGTCACCAGCAGCCGCAG
TCGGGGCAGCAGCAGGAATCGTCGACGAAAGCTACTAGCAATGATGCCGA
AAAGGATGAAAACGCAGGCGAGGAAGAAAGATGACTGCGCAATGACGTTG
CTGGCCTTCGGTGTAGGTTTCTCACACCAGCTTGGACTGGACGCTGGAGA
AGGCGGGGACTATGGCAGAGGGCGGAGGAGACTTGGGCGTCACCAGCAGC
CGCAGTCGGGGCAGCAGCAGGAATCGTCGACGAAAGCTACTAGCAATGAT
GCCGAAAAGGGAGCGGTTGCTCGGATAATACATACTTAAGAGCGGTTGCT
CGGATAATACATACTTAA
back to top