mRNA_H-paniculata_contig10672.434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10672.434.1
Unique NamemRNA_H-paniculata_contig10672.434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: D8LGB6_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB6_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 7.570e-52
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 VAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            VAMLSMQKFSSNVIEKCMDRASEE+IVKYVHELADPAAMRPLLQ     DQYANYVIQKTLQ APRDAALTLVESIREHL LMRNSSGGRRMLT+I+KRFP
Sbjct:   78 VAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQ-----DQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP 173
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: A0A6H5K3P5_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P5_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.780e-49
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 VAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            VAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQ     DQYANYVIQKTLQ APRDAALTLVESIREHL LMRNSSGGRRMLT+I+KRFP
Sbjct:  396 VAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQ-----DQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP 491
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: A0A4D9CTA7_9STRA (PUM-HD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTA7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.380e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            +  LS+QK+SSNV+EKC+++ASE+I   Y+ E+  P  ++ L+Q     DQYANYV+Q+ L  A     L LVE++R HL  MRN++GGRR+L+KI KRFP
Sbjct: 1034 ITSLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCAPGNIKHLMQ-----DQYANYVVQRALSVATHSRGLHLVEAVRPHLHAMRNTAGGRRILSKITKRFP 1129
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: A0A7S2XV53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV53_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.570e-23
Identity = 47/98 (47.96%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNV+EKC+++A++ ++   + E+++P+++  LL      DQ+ANYV+Q++L  AP   A  LV++I+ HLP +RN+SGGRR++ KI KRFP
Sbjct:  177 LSIQKFSSNVVEKCLEKANDRLLNLMISEISNPSSLAELL-----NDQFANYVVQRSLVVAPHAVATELVDNIKPHLPQLRNTSGGRRIIAKILKRFP 269
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: A0A8K1C9G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9G3_PYTOL)

HSP 1 Score: 93.6 bits (231), Expect = 4.060e-20
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A   ++ +Y+ E+     M+ +LQ     DQ+ANYV+Q+ L  A  D  L LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:  807 LSIQKFSSNVIEKCLEKAPPVVLTQYIDEITTCPKMQKMLQ-----DQFANYVVQRALCVASEDQCLALVKAIRPHLVAMKNTSGGRRITARILKRFP 899
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: K3W6G7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6G7_GLOUD)

HSP 1 Score: 93.6 bits (231), Expect = 4.080e-20
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A E +   Y+ EL +   M  +LQ     DQ+ANYV+Q+ L     +  L LV+SIR HL +M+N+SGGRR+  +I KRFP
Sbjct:  873 LSIQKFSSNVIEKCLEKAPERVRQNYIKELINCPKMNKMLQ-----DQFANYVVQRALCVCSEEQCLQLVKSIRPHLAMMKNTSGGRRITARILKRFP 965
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: A0A3M6VTZ0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTZ0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.560e-20
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A E +  KY+ E+ + + M  +LQ     DQ+ANYV+Q+ L     +  L LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:  870 LSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCSKMNKMLQ-----DQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFP 962
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: M4BTR1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTR1_HYAAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.570e-20
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A E +  KY+ E+     M  +LQ     DQ+ANYV+Q+ L     +  L LV++IR HL  MRN+SGGRR+  +I KRFP
Sbjct:  908 LSVQKFSSNVIEKCLEKAPERVRQKYIAEITSCPKMNKMLQ-----DQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMRNTSGGRRITARILKRFP 1000
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: H3GN50_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GN50_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-19
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A E +  KY+ E+     M  +LQ     DQ+ANYV+Q+ L     +  L LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:  784 LSVQKFSSNVIEKCLEKAPERVRQKYISEITSCPKMNKMLQ-----DQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFP 876
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BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Match: V9FR80_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9FR80_PHYPR)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-19
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   10 LSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQYANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP 303
            LS+QKFSSNVIEKC+++A E +  KY+ E+ +   M  +LQ     DQ+ANYV+Q+ L     +  L LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:  809 LSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQ-----DQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFP 901
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10672.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB6_ECTSI7.570e-5290.10PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K3P5_9PHAE6.780e-4991.09PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CTA7_9STRA4.380e-2350.50PUM-HD domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S2XV53_9STRA4.570e-2347.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1C9G3_PYTOL4.060e-2048.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W6G7_GLOUD4.080e-2050.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VTZ0_9STRA5.560e-2048.98Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
M4BTR1_HYAAE5.570e-2050.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GN50_PHYRM1.030e-1948.98Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
V9FR80_PHYPR1.030e-1948.98Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10672contigH-paniculata_contig10672:361..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.3e-39
Seed eggNOG ortholog2880.D8LGB6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of translation
EggNOG OGsCOG5099@1,KOG2049@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size303
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10672.434.1prot_H-paniculata_contig10672.434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10672 367..1568 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.8707678-UTR-H-paniculata_contig10672:360..3661622928770.8707678-UTR-H-paniculata_contig10672:360..366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10672 361..366 +
1691480613.1354122-UTR-H-paniculata_contig10672:360..3661691480613.1354122-UTR-H-paniculata_contig10672:360..366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10672 361..366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.8860424-CDS-H-paniculata_contig10672:366..5071622928770.8860424-CDS-H-paniculata_contig10672:366..507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10672 367..507 +
1691480613.1512556-CDS-H-paniculata_contig10672:366..5071691480613.1512556-CDS-H-paniculata_contig10672:366..507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10672 367..507 +
1622928770.8992553-CDS-H-paniculata_contig10672:1412..15681622928770.8992553-CDS-H-paniculata_contig10672:1412..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10672 1413..1568 +
1691480613.1627963-CDS-H-paniculata_contig10672:1412..15681691480613.1627963-CDS-H-paniculata_contig10672:1412..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10672 1413..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10672.434.1

>prot_H-paniculata_contig10672.434.1 ID=prot_H-paniculata_contig10672.434.1|Name=mRNA_H-paniculata_contig10672.434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQASKMTDQY
ANYVIQKTLQQAPRDAALTLVESIREHLPLMRNSSGGRRMLTKIAKRFP
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mRNA from alignment at H-paniculata_contig10672:361..1568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10672.434.1 ID=mRNA_H-paniculata_contig10672.434.1|Name=mRNA_H-paniculata_contig10672.434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1208bp|location=Sequence derived from alignment at H-paniculata_contig10672:361..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCCATGCTGAGCATGCAAAAGTTCTCGAGTAACGTAATTGAGAAGTG
CATGGACAGGGCCTCTGAAGAGATTATAGTGAAGTACGTCCACGAGCTCG
CGGATCCGGCAGCGATGCGTCCCCTACTGCAGGCAAGCAAAATGACCGTG
TTGTGGTTAGCTCAGTGTTGTGTTGCGCTTTTACTCCGTAGCTCAATTTA
TCTTCGTTTCTGTAGTGAGTTTTTGCAGTATGAACGTTTTCCTACCGACA
GAAGAAGTATGTTGACACCATGTGTAAATGTGTCAGCGCTTCTGTTCATT
CGACGTGAAGTATTTTTTTCAGTGCCGTAATCAAGTCGCCCTCTATGTGA
ACCTCGCCGCACACACAGTCTATGGCTGTGTGTGAGGACTTGCGCACCGG
AATATCATGTCAAATACCAGATACCCTGCCGCGTGATGACCAAAAGACAG
AACACCGTACCGTGCTACCGATGTGCTGAATACTGACTACCGACGCGATA
CCGAGGAAACCGTTTGATGTACACATCTACCATTACCTGGAGATTCCTGT
TTTTTCTTTTTTTCTTCTTTTTTTCTCCCTAGTAGTTTCACCCCGTGATA
TTTGCAGGTGACGATCAAAAGAGTACGGCAAAATGGAGGTTGTGTTGCAA
GAGTTGAAAGGTCAGATGGATTCATCCACGAGCTTCTCCAATACTGGTAT
CACTGTTTTTGGTTGTTACCCGCTCATGTTTTTTGCTCGATGGCCAAGCA
GCCTTCTGTTGGTATCGATAACGTTGGCCCTTATTCGCGGACTGACAGCG
ACATGTAAGAGGCCCTGGAATAAGATGCTGTCTACATATGTCACACGCTC
ACGGTCAGTCATCCCGAGTAAGCTCCAAAGTTAACATCTTGTTTTTGCCC
ACCATCTGTTGAACCAAGTCACGCTTGGTATTAAGTTGTGCTGCTGCTTC
TGCCGCTCTCTTTCTCATCGTGTCTTTCGTGTGTCTTGATTCTTCTTCCT
GATCGTGCATCAACCATTGCAAACATACATACACACGCATGGGAAAATAC
AGGATCAGTATGCGAACTACGTTATTCAGAAGACCCTCCAGCAAGCCCCA
AGGGACGCAGCTCTCACTCTGGTGGAAAGTATCCGCGAGCACTTGCCGCT
CATGAGGAACTCTTCCGGGGGGCGCCGCATGCTCACCAAGATCGCTAAGC
GCTTCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig10672:361..1568+

>mRNA_H-paniculata_contig10672.434.1 ID=mRNA_H-paniculata_contig10672.434.1|Name=mRNA_H-paniculata_contig10672.434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig10672:361..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAGCATGCAAAAGTTCTCGAGTAACGTAATTGAGAAGTGCATGGA
CAGGGCCTCTGAAGAGATTATAGTGAAGTACGTCCACGAGCTCGCGGATC
CGGCAGCGATGCGTCCCCTACTGCAGGCAAGCAAAATGACCATGCTGAGC
ATGCAAAAGTTCTCGAGTAACGTAATTGAGAAGTGCATGGACAGGGCCTC
TGAAGAGATTATAGTGAAGTACGTCCACGAGCTCGCGGATCCGGCAGCGA
TGCGTCCCCTACTGCAGGCAAGCAAAATGACCGATCAGTATGCGAACTAC
GTTATTCAGAAGACCCTCCAGCAAGCCCCAAGGGACGCAGCTCTCACTCT
GGTGGAAAGTATCCGCGAGCACTTGCCGCTCATGAGGAACTCTTCCGGGG
GGCGCCGCATGCTCACCAAGATCGCTAAGCGCTTCCCAGATCAGTATGCG
AACTACGTTATTCAGAAGACCCTCCAGCAAGCCCCAAGGGACGCAGCTCT
CACTCTGGTGGAAAGTATCCGCGAGCACTTGCCGCTCATGAGGAACTCTT
CCGGGGGGCGCCGCATGCTCACCAAGATCGCTAAGCGCTTCCCA
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