mRNA_H-paniculata_contig10667.431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10667.431.1
Unique NamemRNA_H-paniculata_contig10667.431.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10667.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10667contigH-paniculata_contig10667:214..1030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size795
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10667.431.1prot_H-paniculata_contig10667.431.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10667 232..1030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.412441-UTR-H-paniculata_contig10667:213..2311622928770.412441-UTR-H-paniculata_contig10667:213..231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10667 214..231 +
1691480612.8614464-UTR-H-paniculata_contig10667:213..2311691480612.8614464-UTR-H-paniculata_contig10667:213..231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10667 214..231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.430561-CDS-H-paniculata_contig10667:231..4381622928770.430561-CDS-H-paniculata_contig10667:231..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10667 232..438 +
1691480612.8728185-CDS-H-paniculata_contig10667:231..4381691480612.8728185-CDS-H-paniculata_contig10667:231..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10667 232..438 +
1622928770.4439354-CDS-H-paniculata_contig10667:460..10301622928770.4439354-CDS-H-paniculata_contig10667:460..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10667 461..1030 +
1691480612.8879488-CDS-H-paniculata_contig10667:460..10301691480612.8879488-CDS-H-paniculata_contig10667:460..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10667 461..1030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10667.431.1

>prot_H-paniculata_contig10667.431.1 ID=prot_H-paniculata_contig10667.431.1|Name=mRNA_H-paniculata_contig10667.431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MRFETQPPSTPTRTKPHDDDLEQWRRTRRKWSSRTGVEWRSRTGRVWNNV
GVHSDNSNIEQPTAAAKLPPTNQPPPSSHQSTQPPTNDRPTRAGNAAVGY
AFTAKPHNLPHLPSLPLADPKNLEAFQILHHPMQDAVRAVRVLAENTAED
AWHPECVTPIKPKIVEVIKGGSHESTKFHTAVNSVFSDARRKGETGMAGP
EAFRQLMTNMARELLEVDLVQASTSLSSFAVAEGSYLKDWLQSIKSTVNS
LNALGKACA
back to top

mRNA from alignment at H-paniculata_contig10667:214..1030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10667.431.1 ID=mRNA_H-paniculata_contig10667.431.1|Name=mRNA_H-paniculata_contig10667.431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=817bp|location=Sequence derived from alignment at H-paniculata_contig10667:214..1030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGCCCGCGGTCCACATATGCGATTTGAAACGCAGCCTCCTTCAACTCC
AACAAGAACCAAACCTCATGACGACGACCTCGAACAGTGGAGGAGGACCA
GGCGGAAATGGAGCAGCAGGACCGGGGTGGAATGGAGGAGTCGGACAGGA
CGAGTATGGAACAATGTGGGGGTCCACAGCGACAACAGCAACATCGAGCA
ACCAACCGCCGCCGCCAAGCTACCCGCCGCCGATCAACCGGCAGCAGCCG
ACCAACCAACCGCCGCCATCCAGCCACCAGTCGACACAACCTCCTACAAA
CGACCGGCCCACGCGGGCGGGTAACGCAGCCGTCGGGTATGCCTTCACCG
CCAAACCCCACAATTTGCCGCATTTGCCATCGTTACCACTGGCGGATCCG
AAAAACTTGGAAGCCTTTCAAATTTTGCACCATCCGATGCAGGATGCCGT
ACGTGCGGTGCGTGTTTTGGCGGAGAACACCGCTGAGGACGCATGGCACC
CCGAATGCGTGACACCTATCAAGCCGAAAATTGTGGAGGTGATCAAGGGT
GGGTCCCACGAATCCACCAAATTCCACACCGCGGTGAACTCTGTGTTCAG
TGACGCACGTCGTAAGGGGGAAACAGGAATGGCGGGACCGGAGGCTTTCC
GCCAACTAATGACCAACATGGCAAGGGAACTCCTGGAGGTGGATCTGGTT
CAAGCATCAACTTCTCTGAGTTCCTTCGCTGTCGCAGAAGGCAGCTATTT
GAAAGACTGGCTGCAATCGATTAAAAGTACGGTAAATTCTCTGAACGCCT
TGGGGAAAGCCTGTGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10667:214..1030+

>mRNA_H-paniculata_contig10667.431.1 ID=mRNA_H-paniculata_contig10667.431.1|Name=mRNA_H-paniculata_contig10667.431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig10667:214..1030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATTTGAAACGCAGCCTCCTTCAACTCCAACAAGAACCAAACCTCA
TGACGACGACCTCGAACAGTGGAGGAGGACCAGGCGGAAATGGAGCAGCA
GGACCGGGGTGGAATGGAGGAGTCGGACAGGACGAGTATGGAACAATGTG
GGGGTCCACAGCGACAACAGCAACATCGAGCAACCAACCGCCGCCGCCAA
GCTACCCATGCGATTTGAAACGCAGCCTCCTTCAACTCCAACAAGAACCA
AACCTCATGACGACGACCTCGAACAGTGGAGGAGGACCAGGCGGAAATGG
AGCAGCAGGACCGGGGTGGAATGGAGGAGTCGGACAGGACGAGTATGGAA
CAATGTGGGGGTCCACAGCGACAACAGCAACATCGAGCAACCAACCGCCG
CCGCCAAGCTACCCCCGACCAACCAACCGCCGCCATCCAGCCACCAGTCG
ACACAACCTCCTACAAACGACCGGCCCACGCGGGCGGGTAACGCAGCCGT
CGGGTATGCCTTCACCGCCAAACCCCACAATTTGCCGCATTTGCCATCGT
TACCACTGGCGGATCCGAAAAACTTGGAAGCCTTTCAAATTTTGCACCAT
CCGATGCAGGATGCCGTACGTGCGGTGCGTGTTTTGGCGGAGAACACCGC
TGAGGACGCATGGCACCCCGAATGCGTGACACCTATCAAGCCGAAAATTG
TGGAGGTGATCAAGGGTGGGTCCCACGAATCCACCAAATTCCACACCGCG
GTGAACTCTGTGTTCAGTGACGCACGTCGTAAGGGGGAAACAGGAATGGC
GGGACCGGAGGCTTTCCGCCAACTAATGACCAACATGGCAAGGGAACTCC
TGGAGGTGGATCTGGTTCAAGCATCAACTTCTCTGAGTTCCTTCGCTGTC
GCAGAAGGCAGCTATTTGAAAGACTGGCTGCAATCGATTAAAAGTACGGT
AAATTCTCTGAACGCCTTGGGGAAAGCCTGTGCCCCGACCAACCAACCGC
CGCCATCCAGCCACCAGTCGACACAACCTCCTACAAACGACCGGCCCACG
CGGGCGGGTAACGCAGCCGTCGGGTATGCCTTCACCGCCAAACCCCACAA
TTTGCCGCATTTGCCATCGTTACCACTGGCGGATCCGAAAAACTTGGAAG
CCTTTCAAATTTTGCACCATCCGATGCAGGATGCCGTACGTGCGGTGCGT
GTTTTGGCGGAGAACACCGCTGAGGACGCATGGCACCCCGAATGCGTGAC
ACCTATCAAGCCGAAAATTGTGGAGGTGATCAAGGGTGGGTCCCACGAAT
CCACCAAATTCCACACCGCGGTGAACTCTGTGTTCAGTGACGCACGTCGT
AAGGGGGAAACAGGAATGGCGGGACCGGAGGCTTTCCGCCAACTAATGAC
CAACATGGCAAGGGAACTCCTGGAGGTGGATCTGGTTCAAGCATCAACTT
CTCTGAGTTCCTTCGCTGTCGCAGAAGGCAGCTATTTGAAAGACTGGCTG
CAATCGATTAAAAGTACGGTAAATTCTCTGAACGCCTTGGGGAAAGCCTG
TGCC
back to top