mRNA_H-paniculata_contig10662.430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10662.430.1
Unique NamemRNA_H-paniculata_contig10662.430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10662.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10662contigH-paniculata_contig10662:3175..3826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size652
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10662.430.1prot_H-paniculata_contig10662.430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10662 3226..3558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.3459845-UTR-H-paniculata_contig10662:3174..32251622928770.3459845-UTR-H-paniculata_contig10662:3174..3225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10662 3175..3225 +
1691480612.834628-UTR-H-paniculata_contig10662:3174..32251691480612.834628-UTR-H-paniculata_contig10662:3174..3225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10662 3175..3225 +
1622928770.3723352-UTR-H-paniculata_contig10662:3558..38261622928770.3723352-UTR-H-paniculata_contig10662:3558..3826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10662 3559..3826 +
1691480612.8499215-UTR-H-paniculata_contig10662:3558..38261691480612.8499215-UTR-H-paniculata_contig10662:3558..3826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10662 3559..3826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.3591623-CDS-H-paniculata_contig10662:3225..35581622928770.3591623-CDS-H-paniculata_contig10662:3225..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10662 3226..3558 +
1691480612.8425698-CDS-H-paniculata_contig10662:3225..35581691480612.8425698-CDS-H-paniculata_contig10662:3225..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10662 3226..3558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10662.430.1

>prot_H-paniculata_contig10662.430.1 ID=prot_H-paniculata_contig10662.430.1|Name=mRNA_H-paniculata_contig10662.430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MPVTTNGIAAGAADAQRGEAVGWSRTNTALTPLMQSHVKGESLWADMDLE
LRLNDVPQSRDGTLVARRATPPHDIATEDGGTAACPTVQDSIGGTRLRRL
LESRLTTVLW*
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mRNA from alignment at H-paniculata_contig10662:3175..3826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10662.430.1 ID=mRNA_H-paniculata_contig10662.430.1|Name=mRNA_H-paniculata_contig10662.430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=652bp|location=Sequence derived from alignment at H-paniculata_contig10662:3175..3826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTGCCGCAGAGGAACCGGCGAGCACGGACGTTGGCCAAGGACGGAA
AATGCCGGTGACCACCAATGGGATAGCGGCTGGCGCGGCGGACGCCCAAA
GGGGGGAGGCGGTTGGATGGAGTAGGACAAACACGGCACTTACGCCACTC
ATGCAAAGTCATGTAAAGGGGGAGTCGTTATGGGCAGATATGGATTTGGA
GCTTCGGCTGAATGACGTCCCGCAGAGCCGAGATGGGACGTTAGTGGCCA
GACGAGCGACGCCACCGCATGATATTGCGACGGAGGATGGAGGGACAGCG
GCCTGTCCGACAGTACAGGACTCCATTGGGGGGACGAGGCTGCGTCGGTT
GCTAGAGTCGCGGTTGACGACCGTCCTTTGGTGAGTCAGGCGAGTGTTGA
AGAGGTGGTCGGCGGTACACCTGCAGGCACGACCAACGGTAGCGAGGGGC
AGGTATGGGGCTAGCAGGGGCAGCGGCGGAATGGAAGCGGGCGGCATCTG
TAACCCACCGAACGGGTGGGCCTCCCACGCAGATGGCCCACAGCGAAGGG
ATCAAGGACGAGAAGGTAATGGCGGAGGCTCAACCGTCAGGGGTGATGCA
TGGTGTACAGAAAGCAAGTCAAACCTGAGCTACATAGTCAGCGCTAACTA
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig10662:3175..3826+

>mRNA_H-paniculata_contig10662.430.1 ID=mRNA_H-paniculata_contig10662.430.1|Name=mRNA_H-paniculata_contig10662.430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig10662:3175..3826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGTGACCACCAATGGGATAGCGGCTGGCGCGGCGGACGCCCAAAG
GGGGGAGGCGGTTGGATGGAGTAGGACAAACACGGCACTTACGCCACTCA
TGCAAAGTCATGTAAAGGGGGAGTCGTTATGGGCAGATATGGATTTGGAG
CTTCGGCTGAATGACGTCCCGCAGAGCCGAGATGGGACGTTAGTGGCCAG
ACGAGCGACGCCACCGCATGATATTGCGACGGAGGATGGAGGGACAGCGG
CCTGTCCGACAGTACAGGACTCCATTGGGGGGACGAGGCTGCGTCGGTTG
CTAGAGTCGCGGTTGACGACCGTCCTTTGGTGAATGCCGGTGACCACCAA
TGGGATAGCGGCTGGCGCGGCGGACGCCCAAAGGGGGGAGGCGGTTGGAT
GGAGTAGGACAAACACGGCACTTACGCCACTCATGCAAAGTCATGTAAAG
GGGGAGTCGTTATGGGCAGATATGGATTTGGAGCTTCGGCTGAATGACGT
CCCGCAGAGCCGAGATGGGACGTTAGTGGCCAGACGAGCGACGCCACCGC
ATGATATTGCGACGGAGGATGGAGGGACAGCGGCCTGTCCGACAGTACAG
GACTCCATTGGGGGGACGAGGCTGCGTCGGTTGCTAGAGTCGCGGTTGAC
GACCGTCCTTTGGTGA
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