mRNA_H-paniculata_contig1066.428.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1066.428.1
Unique NamemRNA_H-paniculata_contig1066.428.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.440e-54
Identity = 83/85 (97.65%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            IFAEDMSDEMCQFALETSQEAFQLTI+KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFT+VPGVYVLLWR
Sbjct:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 8.230e-54
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            IFAEDMSDEMC FALETSQEAFQLTI+KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFT+VPGVYVLLWR
Sbjct:    8 IFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.200e-46
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            IFAEDM+D+MCQFAL+TS+EAF LTI+KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFT++PGVYVL+W+
Sbjct:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 116 bits (290), Expect = 1.050e-31
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDMS+E  + A++ +++AF LTI+ G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFT+ PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.850e-30
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDM+D M +  + T+++AFQL ++ G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF++  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.620e-29
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y ++VPGV VL+WR
Sbjct:    8 VFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 108 bits (270), Expect = 4.850e-29
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDM+D M    L T+++AFQL ++  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF++  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.160e-28
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDMS+E  + A + +++AF +TIS G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF++ PG YVLLWR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 7.150e-28
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVL 246
            +FAEDM+D M + AL T+++AFQL ++  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF++  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.940e-27
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255
            +FAEDM+D M + AL T+++AFQL ++  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF++  GV VL+W+
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI4.440e-5497.65Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE8.230e-5496.47Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA1.200e-4681.18Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH1.050e-3161.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA2.850e-3057.65Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A7S4E7C9_9STRA2.620e-2958.82Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A0P1AY91_PLAHL4.850e-2957.65Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S3H299_9STRA1.160e-2858.82Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
H3HCG0_PHYRM7.150e-2859.76Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A225VFG7_9STRA1.940e-2758.82Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1066contigH-paniculata_contig1066:8681..9880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.1e-38
Seed eggNOG ortholog2880.D7FQ30
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size255
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1066.428.1prot_H-paniculata_contig1066.428.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1066 8681..9865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.1109715-CDS-H-paniculata_contig1066:8680..88451622928770.1109715-CDS-H-paniculata_contig1066:8680..8845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1066 8681..8845 -
1691480612.7472517-CDS-H-paniculata_contig1066:8680..88451691480612.7472517-CDS-H-paniculata_contig1066:8680..8845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1066 8681..8845 -
1622928770.1297162-CDS-H-paniculata_contig1066:9790..98651622928770.1297162-CDS-H-paniculata_contig1066:9790..9865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1066 9791..9865 -
1691480612.7573242-CDS-H-paniculata_contig1066:9790..98651691480612.7573242-CDS-H-paniculata_contig1066:9790..9865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1066 9791..9865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928770.148676-UTR-H-paniculata_contig1066:9865..98801622928770.148676-UTR-H-paniculata_contig1066:9865..9880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1066 9866..9880 -
1691480612.7717237-UTR-H-paniculata_contig1066:9865..98801691480612.7717237-UTR-H-paniculata_contig1066:9865..9880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1066 9866..9880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1066.428.1

>prot_H-paniculata_contig1066.428.1 ID=prot_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVV
GRSFGAYVTHEIKTYMYFTMVPGVYVLLWR
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mRNA from alignment at H-paniculata_contig1066:8681..9880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1066.428.1 ID=mRNA_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig1066:8681..9880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTTGCGGAGGATATGTCGGACGAAATGTGCCAGTTTGCTTTGGAGAC CAGCCAAGAAGCTTTCCAGCTCACAATTAGCAAGGGTCAGGTCAGTGAGC GCCCTGATTTATCCAAAAGCCGGTGGCATAGATAGATAACAGTAAGATTA TCCACCTCGAGTCATGCTCTGCGTGCAGGTTGGGCAGAGTTTTGCGCACT GAGAACTCTCAATCGCCAAAACAGCTCCGTGGAAGGATGACATATTGAAC TCTAAAGAGGGGGTGTTGTAGGCTAGAAGGAGTCTTTGTTAGGATATGTA GATACCCTTGTGGCTTCTGACACAGTAGTGCAGACACAGTAGTGCAGACA CAGTAGTGCAGACACAGTAGTGCAGACACAGTAGTGCAGACACAGTAGTT TACTTGTTCACATATTATGATGCGCAGACGAGAGTGAGACAAATGGGGTC GGTGCACCTCCCATGTCGTGGATAATATCTTGTTCTAGAAATTCCCAGAT AACCCGCAGGATGTTCCAGCTCCTGAACATCCAATAAACGGCAAATCGCG GAACGTTCCGACTGCACAAGATTCAAAAAAATATCCCGTGCCAACGTCCC GACGGTCAATACTCTGCGTTATCGTATCACATCATCATTCCTCAGCAGTC TTAGCATGGCAGGATCTGACGCGTTTTCTGGGCCTGAACTTTAGAAAGTA TTTATAATATGGTGGAGCTTTTTGATAGCGAAAATCGCTATCTTTCTGTT CGTCGCTATACCGCAGAAAATATCGTCAGCCCGCGCGACGAACGTGATGA AAGATGATACACAAACAAAAATGACCTGCAAGGCAACAATCGTATCGTCA ATGTGTGCTCTTTGCCTTACAAAATTCCATTGTGTGTGACCGAGCGCGGT TGTCGAGTCATCCCCGTGTAGCTATCGAGCGTCGAATATGAATTTTAATG CAGCCGTACATGCAGCACCCTCCTTCAGGTTATGTTCGTCACCACCAGCC AAGTTTCATATGTGCTTCTGCTGAAATTGTTCAAGGTGTTCACCACAATT GCGTCGTGCATACGGAAAGCGTTCGAGAAGTCTTACGGGCGTGGGTGGAA CGTGGTGGTGGGGAGGAGTTTTGGAGCCTATGTTACGCACGAGATCAAGA CGTACATGTATTTTACCATGGTCCCAGGGGTGTACGTTTTGCTATGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1066:8681..9880-

>mRNA_H-paniculata_contig1066.428.1 ID=mRNA_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig1066:8681..9880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGACGAAATGTGCCAGTTTGCTTTGGAGACCAGCCAAGAAGCTTT
CCAGCTCACAATTAGCAAGGGTCAGATGTCGGACGAAATGTGCCAGTTTG
CTTTGGAGACCAGCCAAGAAGCTTTCCAGCTCACAATTAGCAAGGGTCAG
GTGTTCACCACAATTGCGTCGTGCATACGGAAAGCGTTCGAGAAGTCTTA
CGGGCGTGGGTGGAACGTGGTGGTGGGGAGGAGTTTTGGAGCCTATGTTA
CGCACGAGATCAAGACGTACATGTATTTTACCATGGTCCCAGGGGTGTAC
GTTTTGCTATGGAGGGTGTTCACCACAATTGCGTCGTGCATACGGAAAGC
GTTCGAGAAGTCTTACGGGCGTGGGTGGAACGTGGTGGTGGGGAGGAGTT
TTGGAGCCTATGTTACGCACGAGATCAAGACGTACATGTATTTTACCATG
GTCCCAGGGGTGTACGTTTTGCTATGGAGG
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