mRNA_H-paniculata_contig1066.428.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 173 bits (438), Expect = 4.440e-54 Identity = 83/85 (97.65%), Postives = 85/85 (100.00%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 IFAEDMSDEMCQFALETSQEAFQLTI+KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFT+VPGVYVLLWR Sbjct: 8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 171 bits (433), Expect = 8.230e-54 Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 IFAEDMSDEMC FALETSQEAFQLTI+KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFT+VPGVYVLLWR Sbjct: 8 IFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.200e-46 Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 IFAEDM+D+MCQFAL+TS+EAF LTI+KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFT++PGVYVL+W+ Sbjct: 8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 116 bits (290), Expect = 1.050e-31 Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDMS+E + A++ +++AF LTI+ G V +TIA IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFT+ PG YVLLW+ Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.850e-30 Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDM+D M + + T+++AFQL ++ G+ F+TIA +R+ EK YGRGWN +VG SFGAYVTHEIKTY+YF++ GV VL+WR Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.620e-29 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDMS+E F LE + +AF +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y ++VPGV VL+WR Sbjct: 8 VFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 108 bits (270), Expect = 4.850e-29 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDM+D M L T+++AFQL ++ + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF++ GV VL+W+ Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.160e-28 Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDMS+E + A + +++AF +TIS G +TIA IRK F+ + GWN +VGRSFGAYVTHEIKTY YF++ PG YVLLWR Sbjct: 32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 105 bits (262), Expect = 7.150e-28 Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVL 246 +FAEDM+D M + AL T+++AFQL ++ + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF++ GV VL Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.940e-27 Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 1 Query: 1 IFAEDMSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTMVPGVYVLLWR 255 +FAEDM+D M + AL T+++AFQL ++ + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF++ GV VL+W+ Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1066.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1066.428.1 >prot_H-paniculata_contig1066.428.1 ID=prot_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MSDEMCQFALETSQEAFQLTISKGQVFTTIASCIRKAFEKSYGRGWNVVVback to top mRNA from alignment at H-paniculata_contig1066:8681..9880- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1066.428.1 ID=mRNA_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig1066:8681..9880- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1066:8681..9880- >mRNA_H-paniculata_contig1066.428.1 ID=mRNA_H-paniculata_contig1066.428.1|Name=mRNA_H-paniculata_contig1066.428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig1066:8681..9880- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |