mRNA_H-paniculata_contig10659.427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10659.427.1
Unique NamemRNA_H-paniculata_contig10659.427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10659.427.1 vs. uniprot
Match: D7FGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.380e-65
Identity = 121/214 (56.54%), Postives = 153/214 (71.50%), Query Frame = 3
Query:   36 RAHAVFSKLAKLFGVPSHWRPKGYAEPDVAGGANG---LSVVFKPERDKNAPSFLSNEGQAQLASGRRVCKPWDVSYVGDPMYRPLRAWETELLVQFWVGLSEKFNDRWLGWASPQLDDDGDLDEGS-----YEDEGPSRAIAVAKDFQRKLARGGRWASLPRRLNLRPLADLRATLGLLVALYILMQAWSLNSTVGMSLTTLFACLCIRISTM 653
            RA A+ SKL +LFG+P +W+PKG+AE +  GGA G   LS +F PER+K AP FLS +G+ QLASG+R CKPWDV+YVGDPMYRP RAWE E L+  WVGLSE  N RWLGW++P  +  GD   GS     ++DEG  +AI   KDFQR++ R  RWA LP R+NLRPLAD+RAT+GL VALY+L  A+ L+S  G  +T +   L +R+STM
Sbjct:  668 RARAISSKLQELFGLPPNWKPKGHAE-NGQGGAQGTMKLSEMFHPEREKQAPYFLSQQGRTQLASGQRACKPWDVAYVGDPMYRPRRAWEMEALIALWVGLSELVNSRWLGWSTPDREG-GDSSRGSGSDSVFDDEGSGKAIVQGKDFQRRVWREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLAYRLSSVCGACVTVVLGALVVRLSTM 879          
BLAST of mRNA_H-paniculata_contig10659.427.1 vs. uniprot
Match: A0A7S1FUP6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUP6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.600e-5
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   96 PKGYAEPDVAGGANGLSVVFKPERDKNAPSFLSNEGQAQLASGRRVCKPWDVSYVGDPMYRPLRAWETELLVQFWVGLSEKFNDRWLG 359
            P+ Y +P+  GG      + KP+R+++    L+ EG+ Q+  G R C+P  V Y+GDP++R +R++E   LV     +S   N   LG
Sbjct:  555 PEAY-DPEEEGGQTWEGGIEKPDRERSG--LLTAEGRRQVQMGSRACRPGQVGYLGDPLFRAVRSYEVAWLVILTQEVSVWINQHVLG 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10659.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGU8_ECTSI1.380e-6556.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1FUP6_9STRA2.600e-534.09Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10659contigH-paniculata_contig10659:4436..8208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1412
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.967532-UTR-H-paniculata_contig10659:4435..51821622928769.967532-UTR-H-paniculata_contig10659:4435..5182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 4436..5182 -
1691480612.6675904-UTR-H-paniculata_contig10659:4435..51821691480612.6675904-UTR-H-paniculata_contig10659:4435..5182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 4436..5182 -
1622928770.0341077-UTR-H-paniculata_contig10659:6509..65401622928770.0341077-UTR-H-paniculata_contig10659:6509..6540Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 6510..6540 -
1691480612.7146804-UTR-H-paniculata_contig10659:6509..65401691480612.7146804-UTR-H-paniculata_contig10659:6509..6540Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 6510..6540 -
1622928770.0495157-UTR-H-paniculata_contig10659:7009..71371622928770.0495157-UTR-H-paniculata_contig10659:7009..7137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 7010..7137 -
1691480612.7249956-UTR-H-paniculata_contig10659:7009..71371691480612.7249956-UTR-H-paniculata_contig10659:7009..7137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 7010..7137 -
1622928770.0604877-UTR-H-paniculata_contig10659:8098..82081622928770.0604877-UTR-H-paniculata_contig10659:8098..8208Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 8099..8208 -
1691480612.7365632-UTR-H-paniculata_contig10659:8098..82081691480612.7365632-UTR-H-paniculata_contig10659:8098..8208Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10659 8099..8208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.9875374-CDS-H-paniculata_contig10659:5182..53111622928769.9875374-CDS-H-paniculata_contig10659:5182..5311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 5183..5311 -
1691480612.6807044-CDS-H-paniculata_contig10659:5182..53111691480612.6807044-CDS-H-paniculata_contig10659:5182..5311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 5183..5311 -
1622928770.0063057-CDS-H-paniculata_contig10659:5757..59191622928770.0063057-CDS-H-paniculata_contig10659:5757..5919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 5758..5919 -
1691480612.6902344-CDS-H-paniculata_contig10659:5757..59191691480612.6902344-CDS-H-paniculata_contig10659:5757..5919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 5758..5919 -
1622928770.0197058-CDS-H-paniculata_contig10659:6404..65091622928770.0197058-CDS-H-paniculata_contig10659:6404..6509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 6405..6509 -
1691480612.701672-CDS-H-paniculata_contig10659:6404..65091691480612.701672-CDS-H-paniculata_contig10659:6404..6509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10659 6405..6509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10659.427.1prot_H-paniculata_contig10659.427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10659 5183..6509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10659.427.1

>prot_H-paniculata_contig10659.427.1 ID=prot_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MYRPLRAWETELLVQFWVGLSEKFNDRWLGWASPQLDDDGDLDEGSYEDE
GPSRAIAVAKDFQRKLARGGRWASLPRRLNLRPLADLRATLGLLVALYIL
MQAWSLNSTVGMSLTTLFACLCIRISTMELV*
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mRNA from alignment at H-paniculata_contig10659:4436..8208-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10659.427.1 ID=mRNA_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3773bp|location=Sequence derived from alignment at H-paniculata_contig10659:4436..8208- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTTTTCGCGGGCGGAAGGCGACGAAGGGAAAAGAAGGGCTCATGCTGTT TTTTCCAAGCTGGCGAAGCTATTCGGCGTTCCGTCACACTGGCGACCAAA GGGATATGCGGTGCGTATTTTTGGTGGTGAAACCTGCCAACAGGTGAAGT GGGGTCGCTGTGAGCTTGTACGCGCTACAGGAGGAGTCTAGGAAAGCACT TGAACAAGGAATGGTAAGCTATGGCAAAGTATACACAACATGTTTACCAC TCGAAGTAAAGAAAGCCGACCACCGTAACTACCGTTTTGGGGCCGTACAG TGTTGAATTGGTCATGTTTCGAACCAAAGGGGCTGATCCAGGAGGGTCGT ACTTCAGAATAAGCGAATAAAGTTTAGCAGGCGCACATTCGTTGTCGCCG CCAACACCTGACTGTAGGTGCCGAAGGCCTTAACAGCAGGACCCGGTTGA GGCAAGCTTTGAGCTGCAGAGCCCTCCCACTATTTAGAGGGGCGCTCGCG TTTCCACCAGATTTAGACACGCGACGCTCGTGCAATCATTTTTGTTTCAC CGCACCCCTCTTATGTATGCCCCCAAGATCCACCCCAGAGGTGTCTCTCT GTAGCTTTACTGCCGCAGTTTGGTTTGCTCGGGAAATAGTAACTATATTT GAGTAATGTATGGAAATAAACATGGTTCGAACCGACGATTGCCATGACCA CGCGTTAAGTTGAGCAAGTGACCTGTCCAGCGCCGGCTCCCATCTACATA CCTTCTTAGTCATTATCTAGTCCCTATCTCCAATACAGGAGAAAATTATG CTCTTGACACGATTATTGGGATAGTAAGCCGCCGCTGTTCCGACAGACGG CAGAGAACAGGCGGTGCGTATGGCACAGACAAGGAGTTAGCGGGCACCGT TCTGCATACAACTGCTGCTGCAGCAGCACTATCTCGACATATATTCCTTC CTCAGATCGAATGCTCTTCTTTGTTCCGATACAGCTGCACAAAAATTCTA ATCTTCCCTCTGCCTGATAACATTGATCGATGATGGTACCTGTCGTGTAT TATTACCTTCTTTGAACGTAGGAGCCGGATGTCGCCGGAGGTGCGAACGG ATTGTCTGTGGTGTTCAAACCTGAGCGAGACAAAAACGCACCATCTTTCC TGTCCAACGAGGGCCAGGCGCAGTTAGCGTCGGGAAGGAGGGTGTGCAAG TGAGCAGTGTGCGGCTTCTTTGGTGTCTTTTTTCGGAGGAGGGGAAAAAG TACGGATTGAACCAGGAAAAACTCTGGTCTTGGGGCGGTTCGGTACATGT AGGCACTATTTATTCGGCGGGTTAACGAGGACATGAGGCGCTTTTGAGTT CGCATCTTGTCACATATTTGACTAAAGACTTTTTATTTGAACTGTTGCTT CCTTCGGTGTGCGCGGTATCCACGCACCAGGTTGAAAAGTAGTGCTTCTG AGGTGTTTGTGGTATTTGCTCTTGCTTGGTAGGACGAGGTGCGAGCGACT GAAATGAAGTGGTTCAGTGAGGTGTCAACATGTGACGGTCGGGTTTTTGA CACAGTTTTGATGGAACATAGGTTCCGTACTCTCCCACCGTGTACACGCA CCTCTCTCACCCTTACCGCACTTGCTTTGATATCTGATATTTGACATCTG ATGTCTGAATTCATGCAGACCTTGGGATGTGTCTTATGTCGGAGACCCCA TGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAATTCTGG GTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGCTTCTCC GCAGGTGTGCTGTTGACTGTAGCAGAAACACCAGGGCCTATTCTGATTGT GCCGTGATATTTGTTGCCGAGGGGCGACCCGGGTAGTTGAGCCACTAGCA CAAATGCGCACGATGGGGCTTTGGACTCTACTGGGTTATGCTCGATCCAT TTTACCTGTGATTGAATACAACCTAGATCTTGATGGAATCGCTCCATGGG TTATTATTGCTGGTAGCGACCTGGCTGGTTCCCAATTTTTCCCAGGCCCT TGTATACACACACACACATACACACACACACACACACACACACACACACA CACACACACACACACCTAGTGTCTACTACTTGACATATCAACCTGTCGAC ACGTTCGCCCAATCTTTTGGTGTTCGTTCTCCCTCCGAGTTTCCTCTGTT ATCGTGGTCTGTATTTGCTCTCAGCACCAACGTTATCCTGTCGTGTATAT GGTATTTAATCTATGCGTGTATGTGTGTGTTACTACTAGCTCGATGACGA CGGTGACCTCGACGAGGGTTCGTATGAAGACGAAGGACCAAGCCGCGCTA TAGCAGTTGCCAAGGACTTCCAGCGAAAATTGGCCAGAGGGGGACGGTGG GCGTCGCTGCCTCGAAGACTCAACCTCAGACCGCTGGCAGACCTACGAGC GGTAAGTGTTAAACGCCACACGTCTTGTGTCCAAACATGGAGCAAAGTTA CCGCAGCGACCAAGCAGATAAGACAATTTTCTACTCTGTGTGATGCTCCA GTGTTGTGGAGGCGCGAGCCTATGCCGCACGCAGATGTCGAGCGGCCCAC TCAGATAATCCGAGCAGTGTGCGTGTGCCATCACGTCATCGGATGCTATG GCACTTCAGAAGATGTTCCGTGTACTACATGATATCCCCCCCTCTCATTC TGTACCAGTCTGCTGTGCTCTCTGCCAAGTTTGTTATGTTCTGTTCTGTG ACCGCGGGTCCGAGGAGGGCAAGAGAATTGCGAAATACGTGTCTCATCAA AATCATCCCTGACTTGTACCCACCTCTGTCGTGTGCAAATGACTGTGAAT GCCTTCTGTTATCGTGCAACGATGCCTACTGAAATCGCATCGTGCAGACT CTGGGGCTATTGGTGGCGTTGTATATTCTGATGCAAGCGTGGAGCCTAAA CTCCACGGTCGGCATGTCGCTTACGACCCTGTTCGCCTGCCTGTGCATCA GAATCTCCACGATGGAGTTGGTCTGATGCTTGGAGTACGTTGACTAGTGC GGGCGTGTATAGTGGAGAAGCCCCTGCGCGCAGTTTAAGATTGGAGCAAT ACACCTGAAGGGAGAGGAAGAGGAAAAGGGAAAGGGAAAGGGTTAATGCG CCCTCTAAAGATCGATTGGTCATTTTTTTAGCGGAATTATCTGATTGGTG TAAAAACCACGAGGTTCAATTCTGCGGTGGCCTTATTCTTGTAGACCCCT TCTAGACATCATACTGGTGCAAATAACCGAAAGTACCTTGTCCCGACAGG GACGCCATGTTACGCTTTTTTGTGTTGGAGGTCTTTGGGTTGATATCAGG CTGTCGTTGGCCTTTTCAAGCCCACAGCATGTGTGGCGGACATTGTATTG CTGTAGCTGTAGCTGTAACTGTAACGACGGGGCAAACTTGTTTCCGTGGG CAAGAGTTCAAAAGTTTGGTTGCGCGAGGAACAAGAACATGGCTCGGGGT ACGTGAAGCAAAACGCGAACGTTTTGTTGTCCTGGCCAAGCGCATGCAAA GGGTATGTGCGTATGCCGAGGAGAATTACCCAAGTACTGTTGTCCATCTG TGCATTTCATGGCATCACATCTACCTTCCATTATACATGTAAAATAATAC AAGACACAAGGAGACATGTACAACTCATCAAATATCTGCCTTATTACCAA AAGGGGCTACCCTCTTTTTTGTTCTTTTTGGTTGGGTACCGGACGAGATA AGTTCGCACGGGTGGTTGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10659:4436..8208-

>mRNA_H-paniculata_contig10659.427.1 ID=mRNA_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig10659:4436..8208- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAATTCTG
GGTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGCTTCTC
CGCAGATGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAA
TTCTGGGTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGC
TTCTCCGCAGCTCGATGACGACGGTGACCTCGACGAGGGTTCGTATGAAG
ACGAAGGACCAAGCCGCGCTATAGCAGTTGCCAAGGACTTCCAGCGAAAA
TTGGCCAGAGGGGGACGGTGGGCGTCGCTGCCTCGAAGACTCAACCTCAG
ACCGCTGGCAGACCTACGAGCGCTCGATGACGACGGTGACCTCGACGAGG
GTTCGTATGAAGACGAAGGACCAAGCCGCGCTATAGCAGTTGCCAAGGAC
TTCCAGCGAAAATTGGCCAGAGGGGGACGGTGGGCGTCGCTGCCTCGAAG
ACTCAACCTCAGACCGCTGGCAGACCTACGAGCGACTCTGGGGCTATTGG
TGGCGTTGTATATTCTGATGCAAGCGTGGAGCCTAAACTCCACGGTCGGC
ATGTCGCTTACGACCCTGTTCGCCTGCCTGTGCATCAGAATCTCCACGAT
GGAGTTGGTCTGAACTCTGGGGCTATTGGTGGCGTTGTATATTCTGATGC
AAGCGTGGAGCCTAAACTCCACGGTCGGCATGTCGCTTACGACCCTGTTC
GCCTGCCTGTGCATCAGAATCTCCACGATGGAGTTGGTCTGA
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