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Homology
BLAST of mRNA_H-paniculata_contig10659.427.1 vs. uniprot
Match: D7FGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI) HSP 1 Score: 236 bits (602), Expect = 1.380e-65 Identity = 121/214 (56.54%), Postives = 153/214 (71.50%), Query Frame = 3
Query: 36 RAHAVFSKLAKLFGVPSHWRPKGYAEPDVAGGANG---LSVVFKPERDKNAPSFLSNEGQAQLASGRRVCKPWDVSYVGDPMYRPLRAWETELLVQFWVGLSEKFNDRWLGWASPQLDDDGDLDEGS-----YEDEGPSRAIAVAKDFQRKLARGGRWASLPRRLNLRPLADLRATLGLLVALYILMQAWSLNSTVGMSLTTLFACLCIRISTM 653
RA A+ SKL +LFG+P +W+PKG+AE + GGA G LS +F PER+K AP FLS +G+ QLASG+R CKPWDV+YVGDPMYRP RAWE E L+ WVGLSE N RWLGW++P + GD GS ++DEG +AI KDFQR++ R RWA LP R+NLRPLAD+RAT+GL VALY+L A+ L+S G +T + L +R+STM
Sbjct: 668 RARAISSKLQELFGLPPNWKPKGHAE-NGQGGAQGTMKLSEMFHPEREKQAPYFLSQQGRTQLASGQRACKPWDVAYVGDPMYRPRRAWEMEALIALWVGLSELVNSRWLGWSTPDREG-GDSSRGSGSDSVFDDEGSGKAIVQGKDFQRRVWREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLAYRLSSVCGACVTVVLGALVVRLSTM 879
BLAST of mRNA_H-paniculata_contig10659.427.1 vs. uniprot
Match: A0A7S1FUP6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUP6_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.600e-5 Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 3
Query: 96 PKGYAEPDVAGGANGLSVVFKPERDKNAPSFLSNEGQAQLASGRRVCKPWDVSYVGDPMYRPLRAWETELLVQFWVGLSEKFNDRWLG 359
P+ Y +P+ GG + KP+R+++ L+ EG+ Q+ G R C+P V Y+GDP++R +R++E LV +S N LG
Sbjct: 555 PEAY-DPEEEGGQTWEGGIEKPDRERSG--LLTAEGRRQVQMGSRACRPGQVGYLGDPLFRAVRSYEVAWLVILTQEVSVWINQHVLG 639
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 1412 |
Cds size | 396 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10659.427.1 >prot_H-paniculata_contig10659.427.1 ID=prot_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MYRPLRAWETELLVQFWVGLSEKFNDRWLGWASPQLDDDGDLDEGSYEDE GPSRAIAVAKDFQRKLARGGRWASLPRRLNLRPLADLRATLGLLVALYIL MQAWSLNSTVGMSLTTLFACLCIRISTMELV* back to topmRNA from alignment at H-paniculata_contig10659:4436..8208- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10659.427.1 ID=mRNA_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3773bp|location=Sequence derived from alignment at H-paniculata_contig10659:4436..8208- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGTTTTCGCGGGCGGAAGGCGACGAAGGGAAAAGAAGGGCTCATGCTGTT
TTTTCCAAGCTGGCGAAGCTATTCGGCGTTCCGTCACACTGGCGACCAAA
GGGATATGCGGTGCGTATTTTTGGTGGTGAAACCTGCCAACAGGTGAAGT
GGGGTCGCTGTGAGCTTGTACGCGCTACAGGAGGAGTCTAGGAAAGCACT
TGAACAAGGAATGGTAAGCTATGGCAAAGTATACACAACATGTTTACCAC
TCGAAGTAAAGAAAGCCGACCACCGTAACTACCGTTTTGGGGCCGTACAG
TGTTGAATTGGTCATGTTTCGAACCAAAGGGGCTGATCCAGGAGGGTCGT
ACTTCAGAATAAGCGAATAAAGTTTAGCAGGCGCACATTCGTTGTCGCCG
CCAACACCTGACTGTAGGTGCCGAAGGCCTTAACAGCAGGACCCGGTTGA
GGCAAGCTTTGAGCTGCAGAGCCCTCCCACTATTTAGAGGGGCGCTCGCG
TTTCCACCAGATTTAGACACGCGACGCTCGTGCAATCATTTTTGTTTCAC
CGCACCCCTCTTATGTATGCCCCCAAGATCCACCCCAGAGGTGTCTCTCT
GTAGCTTTACTGCCGCAGTTTGGTTTGCTCGGGAAATAGTAACTATATTT
GAGTAATGTATGGAAATAAACATGGTTCGAACCGACGATTGCCATGACCA
CGCGTTAAGTTGAGCAAGTGACCTGTCCAGCGCCGGCTCCCATCTACATA
CCTTCTTAGTCATTATCTAGTCCCTATCTCCAATACAGGAGAAAATTATG
CTCTTGACACGATTATTGGGATAGTAAGCCGCCGCTGTTCCGACAGACGG
CAGAGAACAGGCGGTGCGTATGGCACAGACAAGGAGTTAGCGGGCACCGT
TCTGCATACAACTGCTGCTGCAGCAGCACTATCTCGACATATATTCCTTC
CTCAGATCGAATGCTCTTCTTTGTTCCGATACAGCTGCACAAAAATTCTA
ATCTTCCCTCTGCCTGATAACATTGATCGATGATGGTACCTGTCGTGTAT
TATTACCTTCTTTGAACGTAGGAGCCGGATGTCGCCGGAGGTGCGAACGG
ATTGTCTGTGGTGTTCAAACCTGAGCGAGACAAAAACGCACCATCTTTCC
TGTCCAACGAGGGCCAGGCGCAGTTAGCGTCGGGAAGGAGGGTGTGCAAG
TGAGCAGTGTGCGGCTTCTTTGGTGTCTTTTTTCGGAGGAGGGGAAAAAG
TACGGATTGAACCAGGAAAAACTCTGGTCTTGGGGCGGTTCGGTACATGT
AGGCACTATTTATTCGGCGGGTTAACGAGGACATGAGGCGCTTTTGAGTT
CGCATCTTGTCACATATTTGACTAAAGACTTTTTATTTGAACTGTTGCTT
CCTTCGGTGTGCGCGGTATCCACGCACCAGGTTGAAAAGTAGTGCTTCTG
AGGTGTTTGTGGTATTTGCTCTTGCTTGGTAGGACGAGGTGCGAGCGACT
GAAATGAAGTGGTTCAGTGAGGTGTCAACATGTGACGGTCGGGTTTTTGA
CACAGTTTTGATGGAACATAGGTTCCGTACTCTCCCACCGTGTACACGCA
CCTCTCTCACCCTTACCGCACTTGCTTTGATATCTGATATTTGACATCTG
ATGTCTGAATTCATGCAGACCTTGGGATGTGTCTTATGTCGGAGACCCCA
TGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAATTCTGG
GTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGCTTCTCC
GCAGGTGTGCTGTTGACTGTAGCAGAAACACCAGGGCCTATTCTGATTGT
GCCGTGATATTTGTTGCCGAGGGGCGACCCGGGTAGTTGAGCCACTAGCA
CAAATGCGCACGATGGGGCTTTGGACTCTACTGGGTTATGCTCGATCCAT
TTTACCTGTGATTGAATACAACCTAGATCTTGATGGAATCGCTCCATGGG
TTATTATTGCTGGTAGCGACCTGGCTGGTTCCCAATTTTTCCCAGGCCCT
TGTATACACACACACACATACACACACACACACACACACACACACACACA
CACACACACACACACCTAGTGTCTACTACTTGACATATCAACCTGTCGAC
ACGTTCGCCCAATCTTTTGGTGTTCGTTCTCCCTCCGAGTTTCCTCTGTT
ATCGTGGTCTGTATTTGCTCTCAGCACCAACGTTATCCTGTCGTGTATAT
GGTATTTAATCTATGCGTGTATGTGTGTGTTACTACTAGCTCGATGACGA
CGGTGACCTCGACGAGGGTTCGTATGAAGACGAAGGACCAAGCCGCGCTA
TAGCAGTTGCCAAGGACTTCCAGCGAAAATTGGCCAGAGGGGGACGGTGG
GCGTCGCTGCCTCGAAGACTCAACCTCAGACCGCTGGCAGACCTACGAGC
GGTAAGTGTTAAACGCCACACGTCTTGTGTCCAAACATGGAGCAAAGTTA
CCGCAGCGACCAAGCAGATAAGACAATTTTCTACTCTGTGTGATGCTCCA
GTGTTGTGGAGGCGCGAGCCTATGCCGCACGCAGATGTCGAGCGGCCCAC
TCAGATAATCCGAGCAGTGTGCGTGTGCCATCACGTCATCGGATGCTATG
GCACTTCAGAAGATGTTCCGTGTACTACATGATATCCCCCCCTCTCATTC
TGTACCAGTCTGCTGTGCTCTCTGCCAAGTTTGTTATGTTCTGTTCTGTG
ACCGCGGGTCCGAGGAGGGCAAGAGAATTGCGAAATACGTGTCTCATCAA
AATCATCCCTGACTTGTACCCACCTCTGTCGTGTGCAAATGACTGTGAAT
GCCTTCTGTTATCGTGCAACGATGCCTACTGAAATCGCATCGTGCAGACT
CTGGGGCTATTGGTGGCGTTGTATATTCTGATGCAAGCGTGGAGCCTAAA
CTCCACGGTCGGCATGTCGCTTACGACCCTGTTCGCCTGCCTGTGCATCA
GAATCTCCACGATGGAGTTGGTCTGATGCTTGGAGTACGTTGACTAGTGC
GGGCGTGTATAGTGGAGAAGCCCCTGCGCGCAGTTTAAGATTGGAGCAAT
ACACCTGAAGGGAGAGGAAGAGGAAAAGGGAAAGGGAAAGGGTTAATGCG
CCCTCTAAAGATCGATTGGTCATTTTTTTAGCGGAATTATCTGATTGGTG
TAAAAACCACGAGGTTCAATTCTGCGGTGGCCTTATTCTTGTAGACCCCT
TCTAGACATCATACTGGTGCAAATAACCGAAAGTACCTTGTCCCGACAGG
GACGCCATGTTACGCTTTTTTGTGTTGGAGGTCTTTGGGTTGATATCAGG
CTGTCGTTGGCCTTTTCAAGCCCACAGCATGTGTGGCGGACATTGTATTG
CTGTAGCTGTAGCTGTAACTGTAACGACGGGGCAAACTTGTTTCCGTGGG
CAAGAGTTCAAAAGTTTGGTTGCGCGAGGAACAAGAACATGGCTCGGGGT
ACGTGAAGCAAAACGCGAACGTTTTGTTGTCCTGGCCAAGCGCATGCAAA
GGGTATGTGCGTATGCCGAGGAGAATTACCCAAGTACTGTTGTCCATCTG
TGCATTTCATGGCATCACATCTACCTTCCATTATACATGTAAAATAATAC
AAGACACAAGGAGACATGTACAACTCATCAAATATCTGCCTTATTACCAA
AAGGGGCTACCCTCTTTTTTGTTCTTTTTGGTTGGGTACCGGACGAGATA
AGTTCGCACGGGTGGTTGTCGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig10659:4436..8208- >mRNA_H-paniculata_contig10659.427.1 ID=mRNA_H-paniculata_contig10659.427.1|Name=mRNA_H-paniculata_contig10659.427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig10659:4436..8208- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAATTCTG GGTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGCTTCTC CGCAGATGTACCGCCCCCTAAGAGCCTGGGAAACGGAGTTGTTGGTGCAA TTCTGGGTGGGGCTTTCGGAGAAATTCAACGATCGGTGGCTCGGGTGGGC TTCTCCGCAGCTCGATGACGACGGTGACCTCGACGAGGGTTCGTATGAAG ACGAAGGACCAAGCCGCGCTATAGCAGTTGCCAAGGACTTCCAGCGAAAA TTGGCCAGAGGGGGACGGTGGGCGTCGCTGCCTCGAAGACTCAACCTCAG ACCGCTGGCAGACCTACGAGCGCTCGATGACGACGGTGACCTCGACGAGG GTTCGTATGAAGACGAAGGACCAAGCCGCGCTATAGCAGTTGCCAAGGAC TTCCAGCGAAAATTGGCCAGAGGGGGACGGTGGGCGTCGCTGCCTCGAAG ACTCAACCTCAGACCGCTGGCAGACCTACGAGCGACTCTGGGGCTATTGG TGGCGTTGTATATTCTGATGCAAGCGTGGAGCCTAAACTCCACGGTCGGC ATGTCGCTTACGACCCTGTTCGCCTGCCTGTGCATCAGAATCTCCACGAT GGAGTTGGTCTGAACTCTGGGGCTATTGGTGGCGTTGTATATTCTGATGC AAGCGTGGAGCCTAAACTCCACGGTCGGCATGTCGCTTACGACCCTGTTC GCCTGCCTGTGCATCAGAATCTCCACGATGGAGTTGGTCTGA back to top
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