mRNA_H-paniculata_contig10653.425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10653.425.1
Unique NamemRNA_H-paniculata_contig10653.425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10653.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10653contigH-paniculata_contig10653:5418..6086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10653.425.1prot_H-paniculata_contig10653.425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10653 5694..6038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.7891605-UTR-H-paniculata_contig10653:5417..56931622928769.7891605-UTR-H-paniculata_contig10653:5417..5693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10653 5418..5693 +
1691480612.5757685-UTR-H-paniculata_contig10653:5417..56931691480612.5757685-UTR-H-paniculata_contig10653:5417..5693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10653 5418..5693 +
1622928769.8252053-UTR-H-paniculata_contig10653:6038..60861622928769.8252053-UTR-H-paniculata_contig10653:6038..6086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10653 6039..6086 +
1691480612.6012242-UTR-H-paniculata_contig10653:6038..60861691480612.6012242-UTR-H-paniculata_contig10653:6038..6086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10653 6039..6086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.808869-CDS-H-paniculata_contig10653:5693..60381622928769.808869-CDS-H-paniculata_contig10653:5693..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10653 5694..6038 +
1691480612.5893795-CDS-H-paniculata_contig10653:5693..60381691480612.5893795-CDS-H-paniculata_contig10653:5693..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10653 5694..6038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10653.425.1

>prot_H-paniculata_contig10653.425.1 ID=prot_H-paniculata_contig10653.425.1|Name=mRNA_H-paniculata_contig10653.425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MLHVWVIHHTDQILVDFLRSMSNFTHNECYWRMAILGDDISGVLGRLPTM
SSNVTRHVPRQSPYSFRPTNRDQFANQSETNTHTNTHIFHLFHKKRSLCL
AGRISPSAEAYRVP*
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mRNA from alignment at H-paniculata_contig10653:5418..6086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10653.425.1 ID=mRNA_H-paniculata_contig10653.425.1|Name=mRNA_H-paniculata_contig10653.425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig10653:5418..6086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCGCCACCCCAACCCCAGCCCACGAAGAGGAATCCAGCCCGAAGTC
CAACAAGATGCAACGAAAGATCCGGGAACGTTCCGAGAACATTCGATGGC
CGTTCCAATCAAGGTTCCAGAGCCATTAGGAAGATGTGACCAAAATATAA
AGAAACGTCAAGGAAGGCTTTTATGCCATGCTGTACCTCACGTTCGTCTA
CTAAATAAGGCGCACATGGTTGATTATCAGTTCCCACCCCGGCTAAACTA
AGCACTAAACCTTGCCCGAAATTCCCATGTTACATGTGTGGGTCATTCAC
CACACGGATCAAATACTAGTGGATTTTCTCCGCAGCATGTCCAACTTCAC
ACATAACGAATGTTACTGGAGAATGGCAATACTAGGTGATGATATAAGCG
GTGTACTTGGACGGCTTCCCACCATGAGTAGCAATGTTACACGGCACGTG
CCGAGGCAATCACCTTACAGTTTCAGACCAACGAATCGCGATCAGTTCGC
AAACCAAAGCGAGACAAACACACACACAAACACACACATATTCCATCTGT
TCCATAAAAAAAGGTCACTATGTTTGGCGGGTCGTATTTCACCATCTGCG
GAGGCTTACCGAGTCCCTTGATATCGACAAAAAGCTCAAATCTGACGGGT
TCATATGAGCCATTCCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig10653:5418..6086+

>mRNA_H-paniculata_contig10653.425.1 ID=mRNA_H-paniculata_contig10653.425.1|Name=mRNA_H-paniculata_contig10653.425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig10653:5418..6086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACATGTGTGGGTCATTCACCACACGGATCAAATACTAGTGGATTT
TCTCCGCAGCATGTCCAACTTCACACATAACGAATGTTACTGGAGAATGG
CAATACTAGGTGATGATATAAGCGGTGTACTTGGACGGCTTCCCACCATG
AGTAGCAATGTTACACGGCACGTGCCGAGGCAATCACCTTACAGTTTCAG
ACCAACGAATCGCGATCAGTTCGCAAACCAAAGCGAGACAAACACACACA
CAAACACACACATATTCCATCTGTTCCATAAAAAAAGGTCACTATGTTTG
GCGGGTCGTATTTCACCATCTGCGGAGGCTTACCGAGTCCCTTGAATGTT
ACATGTGTGGGTCATTCACCACACGGATCAAATACTAGTGGATTTTCTCC
GCAGCATGTCCAACTTCACACATAACGAATGTTACTGGAGAATGGCAATA
CTAGGTGATGATATAAGCGGTGTACTTGGACGGCTTCCCACCATGAGTAG
CAATGTTACACGGCACGTGCCGAGGCAATCACCTTACAGTTTCAGACCAA
CGAATCGCGATCAGTTCGCAAACCAAAGCGAGACAAACACACACACAAAC
ACACACATATTCCATCTGTTCCATAAAAAAAGGTCACTATGTTTGGCGGG
TCGTATTTCACCATCTGCGGAGGCTTACCGAGTCCCTTGA
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