mRNA_H-paniculata_contig10647.423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10647.423.1
Unique NamemRNA_H-paniculata_contig10647.423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10647.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10647contigH-paniculata_contig10647:5639..6614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size764
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10647.423.1prot_H-paniculata_contig10647.423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10647 5984..6418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.5335596-UTR-H-paniculata_contig10647:5638..57681622928769.5335596-UTR-H-paniculata_contig10647:5638..5768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 5639..5768 +
1691480612.454756-UTR-H-paniculata_contig10647:5638..57681691480612.454756-UTR-H-paniculata_contig10647:5638..5768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 5639..5768 +
1622928769.5566537-UTR-H-paniculata_contig10647:5980..59831622928769.5566537-UTR-H-paniculata_contig10647:5980..5983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 5981..5983 +
1691480612.465795-UTR-H-paniculata_contig10647:5980..59831691480612.465795-UTR-H-paniculata_contig10647:5980..5983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 5981..5983 +
1622928769.588916-UTR-H-paniculata_contig10647:6418..66141622928769.588916-UTR-H-paniculata_contig10647:6418..6614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 6419..6614 +
1691480612.4866853-UTR-H-paniculata_contig10647:6418..66141691480612.4866853-UTR-H-paniculata_contig10647:6418..6614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10647 6419..6614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.5744267-CDS-H-paniculata_contig10647:5983..64181622928769.5744267-CDS-H-paniculata_contig10647:5983..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10647 5984..6418 +
1691480612.4746554-CDS-H-paniculata_contig10647:5983..64181691480612.4746554-CDS-H-paniculata_contig10647:5983..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10647 5984..6418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10647.423.1

>prot_H-paniculata_contig10647.423.1 ID=prot_H-paniculata_contig10647.423.1|Name=mRNA_H-paniculata_contig10647.423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MSQKTQANGTANASETENENMKALENELERCAMMPGEERRSEHDWDQALN
IATESNYNDEKTDSAHFHMAPFLKMTCGLTMQHLAMLVQHKDDIVSTEKE
MLLKIDRQVEEWQQNISSEEKQAPTDDTAWNHSHDRAENEEGKR*
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mRNA from alignment at H-paniculata_contig10647:5639..6614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10647.423.1 ID=mRNA_H-paniculata_contig10647.423.1|Name=mRNA_H-paniculata_contig10647.423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=976bp|location=Sequence derived from alignment at H-paniculata_contig10647:5639..6614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATGGACCATTACAATAGCAGTAGCTGCTGTGTTCACACTGTTCTGTT
TTGTGAGCTCGATTGTGCTTTGGCTTCGAGGAGTCGTGAGTGTCGGCGAG
TGGCTTTTGTGGAGTTGGAAATGTAAGAAGGTGAGTCCAGGTGTTCAACC
TCGAGGCTTACCGAATACGTTCAACGTGTCGTTGTGGAATCGTGGGCTAG
AGATAATAGAAATGAGGTCACTCGATGATGGCGGAGGAGGAAGGTGTACA
CGATTGAAACCCACTGCAAAGAGATGACAATGATTCGATGACTGATTATC
ATGCTACGCTGAATTCCGTGCGCATATACATTTGGTGGTTAGATTATGTC
ACAAAAGACGCAAGCGAACGGAACAGCGAATGCTTCGGAGACAGAGAATG
AAAACATGAAGGCTTTGGAGAACGAGCTGGAGCGATGCGCGATGATGCCG
GGAGAGGAAAGGCGGAGTGAACACGACTGGGACCAAGCGCTCAACATAGC
GACGGAGAGCAACTACAATGACGAGAAGACAGACTCGGCGCACTTTCACA
TGGCGCCATTTTTGAAGATGACTTGCGGGCTGACTATGCAGCACCTAGCC
ATGCTCGTGCAGCACAAGGACGACATTGTTTCAACAGAGAAGGAAATGCT
CCTGAAAATCGACCGTCAAGTAGAGGAATGGCAACAGAACATCTCGAGTG
AGGAGAAGCAGGCACCCACGGATGATACAGCGTGGAACCACAGCCATGAT
CGGGCAGAAAACGAAGAAGGAAAACGGTAAAACTGAGAGTAGCACAGGGC
TGACCAGAACAAAACGAAAAGCCACCATGCCCCTAACGCCCCGGCGGGAT
TACAAAGTGATGAATGCTCGTAAACGCATCGTACTGGAGAAACGTTGGTA
TGCCGTGCTAACGATCGAAGTAGGAGCGTGACGGATGCGAGATCATAAGA
GAAAGCAGGCGTTCTCAGGACTTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig10647:5639..6614+

>mRNA_H-paniculata_contig10647.423.1 ID=mRNA_H-paniculata_contig10647.423.1|Name=mRNA_H-paniculata_contig10647.423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig10647:5639..6614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACAAAAGACGCAAGCGAACGGAACAGCGAATGCTTCGGAGACAGA
GAATGAAAACATGAAGGCTTTGGAGAACGAGCTGGAGCGATGCGCGATGA
TGCCGGGAGAGGAAAGGCGGAGTGAACACGACTGGGACCAAGCGCTCAAC
ATAGCGACGGAGAGCAACTACAATGACGAGAAGACAGACTCGGCGCACTT
TCACATGGCGCCATTTTTGAAGATGACTTGCGGGCTGACTATGCAGCACC
TAGCCATGCTCGTGCAGCACAAGGACGACATTGTTTCAACAGAGAAGGAA
ATGCTCCTGAAAATCGACCGTCAAGTAGAGGAATGGCAACAGAACATCTC
GAGTGAGGAGAAGCAGGCACCCACGGATGATACAGCGTGGAACCACAGCC
ATGATCGGGCAGAAAACGAAGAAGGAAAACGGTAAATGTCACAAAAGACG
CAAGCGAACGGAACAGCGAATGCTTCGGAGACAGAGAATGAAAACATGAA
GGCTTTGGAGAACGAGCTGGAGCGATGCGCGATGATGCCGGGAGAGGAAA
GGCGGAGTGAACACGACTGGGACCAAGCGCTCAACATAGCGACGGAGAGC
AACTACAATGACGAGAAGACAGACTCGGCGCACTTTCACATGGCGCCATT
TTTGAAGATGACTTGCGGGCTGACTATGCAGCACCTAGCCATGCTCGTGC
AGCACAAGGACGACATTGTTTCAACAGAGAAGGAAATGCTCCTGAAAATC
GACCGTCAAGTAGAGGAATGGCAACAGAACATCTCGAGTGAGGAGAAGCA
GGCACCCACGGATGATACAGCGTGGAACCACAGCCATGATCGGGCAGAAA
ACGAAGAAGGAAAACGGTAA
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