mRNA_H-paniculata_contig10647.422.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.710e-45 Identity = 104/267 (38.95%), Postives = 148/267 (55.43%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICR---------DDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFK----EESCGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEICFVICKLCRYCGSSSTSSGDASSDAFPTFSSTTRWRSIEGAINRLIFACTMGVVAVVLLSVLWVVSLPWIAWRIFR 764 QID+TLGPMTQ+IW M+ H LRFS F+ ++M SFA+AF A+F C DDDD L D F T S + F LG P F+ F+ + C P + + G+ +LV+Y+ +LST H + NAE EFH AR +I +SAR VSR R PPP+N++ G+++D E+ V + R G + + FS+T +W+++EG + RL FA T GV AV L ++LW+VS+PW+AW + R Sbjct: 1170 QIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDAFPLRDA---FGTFGDSFVTVFTYALGGPDFEAFQLAGSDCRCDLPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEVWRVGVWVTR---------GRSQARMLKPFSTTHQWKTLEGGLQRLEFAFTFGVAAVGLSTILWIVSVPWVAWCLHR 1424
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.460e-44 Identity = 106/272 (38.97%), Postives = 150/272 (55.15%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICRDDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKEESCGG-------PTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEICFVICKLCRYCGSSSTSSGDASSDAFPTFSSTTRWRSIEGAINRLIFACTMGVVAVVLLSVLWVVSLPWIAWRIFRWRFPRKLREGN 797 QIDSTLGPM QIIW ML LRF VF+VV+M FA+AF A+F C +DL + + ++ L F A LG F+ F + GG P ++D G +LV YL +LST H ++ N E EFHLART +I++SAR V+ +R PPP N+V +G ++D V E+ + + CG ++F + T W + +G + RL+FA TMG+VAV L ++LWV+SLPW+AWRI W + + G+ Sbjct: 1166 QIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAG------SDLDESYGSFGTAFLTVFKAPLGEFKFEDFDDV--GGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRGADRCGLRQHK------ESFAPITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCWVLYKVVETGD 1423
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 167 bits (422), Expect = 5.920e-43 Identity = 123/356 (34.55%), Postives = 169/356 (47.47%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICRDDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKEE---SCGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEICFVICKLCRY---CGSSST--------SSGDASSD----------------------------------AFPTFSST------------------------------------------TRW---RSIEGAINRLIFACTMGVVAVVLLSVLWVVSLPWIAWRIFRWRFPRKLRE 791 Q+D+T GPMTQIIW MLFHL RFSVF++V+M SFA+AF +++S D + +E ++L ++TL SLL F +MLG FD F+ + +C GP+W D G+ +L IY+ +LSTVH ++ NA EFHLAR+ I SA V R PPP+N++MAA+ +VVDV GEIC + K R+ CG + +SG A SD A P F ++ T W + G + RL+FA TMG VA+ L SVLW +S+P +A RI RW L + Sbjct: 1474 QVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYS----DPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSGCGKARPVASSAAVPASGGAGSDPRRRPEERKGPGMISARDVDPVMPGAAAGFTAPAAAPAFDASEDEVKGESGPGVGGGGNILVGNNAKAASSEASRDSGDGLVPMTEWPIAKRAVGGLERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWMLVSSLTQ 1825
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI) HSP 1 Score: 164 bits (414), Expect = 8.180e-43 Identity = 100/269 (37.17%), Postives = 146/269 (54.28%), Query Frame = 3 Query: 27 MTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICRDDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKE--ESCG---GPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEICFVI------CKLCRYCGSSSTSSGDASSDAFPTFSSTTRWRSIEGAINRLIFACTMGVVAVVLLSVLWVVSLPWIAWRIFRWRFPRKLREGNE 800 M QIIW M+ LRF VF+VV+M FA+AF +F C D + LG F + ++ L F+A LG F+ F + C P ++D G +LV YL +L+T H ++N N E EFHLART +I++SAR V+ +R PPP+N+V +GL++D VGE+ + + CKL + + F ++T W + +G + RL F TMG+VAV L S+LWV+SLPW+AWR+ W EG++ Sbjct: 1 MIQIIWRMMSQTLRFGVFIVVVMAGFALAFTTVFGSCNAD------SLLGESFGSFGTAFLSVFEAPLGEFSFEDFHDVGTQCPDNPAPGRASDAGTFLLVAYLVVLAVVMLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWVRLDAGRCKLRQ------------EGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDD 251
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 147 bits (370), Expect = 4.720e-36 Identity = 82/191 (42.93%), Postives = 111/191 (58.12%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICR---------DDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKEES----CGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEI 536 QID+TLGPMTQ+IW M+ H+LRFS F+ ++M SFA+AF A+F C DDDD L D F T SLL F + LG P FDLF + C P + G+ M+V+Y +LST H ++ VNAE EFHLAR ++++SAR V+ +R PPP+N+V G+++DV EI Sbjct: 1036 QIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEHSEPQCTLDDDDAFPLRDA---FGTFGDSLLTVFSSALGGPEFDLFDDAGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEI 1223
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 140 bits (353), Expect = 7.810e-34 Identity = 92/257 (35.80%), Postives = 135/257 (52.53%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICR---------DDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKEESCGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEICFVICKLCRYCGSSSTSSGDASSDAFPTFSSTTRWRSIEGAINRLIFACTMGVVAVVLLSVLWVVSLPWI 746 QID+TLGPMTQ+IW M+ H LRFS F+ ++M SFA+AF A+F C DDDD + D F T S + +F + C P + + G+ +LV+Y+ +LST H + NAE EFH AR I +SAR VSR R PPP+N++ G+++D G + + R G + + FS++ + +++EG + RL FA T GV AV L ++LW+VS+PW+ Sbjct: 507 QIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEHIEPQCTFDDDDAFPIRDA---FGTFGDSFV------------TVFTDCRCNLPEGARNAGIFLLVVYMVTMTVVLLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLDA-GTMLWRAGAWFRR--------GRSQAKMLKPFSTSHQRKTLEGGLQRLEFAFTFGVAAVGLSAILWIVSVPWV 739
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.280e-32 Identity = 76/191 (39.79%), Postives = 108/191 (56.54%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICR---------DDDDETELNDLGTQFKTLSSSLLFTFDAMLGSPGFDLFKEES----CGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGEI 536 QID+TLGPMTQ+IW M+ H+LRFS F+ ++M SFA+AF A+F C DDDD L D F T S + F + LG P DLF + C P + G+ M+V+Y +LST H ++ VNAE EFHLAR ++++SA+ V+ R PPP+N++ G+++D+ EI Sbjct: 404 QIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDPFPLRDA---FGTFGDSFVTVFSSALGGPEIDLFDDVGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEI 591
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 134 bits (336), Expect = 1.680e-31 Identity = 77/187 (41.18%), Postives = 108/187 (57.75%), Query Frame = 3 Query: 3 QIDSTLGPMTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICRDDDDET-ELND-----LGTQFKTLSSSLLFTFDAMLGSPGFDLFK----EESCGGPTWSTDIGVLMLVIYLXXXXXXXXXXXXXLLSTVHSDMNVNAEMEFHLARTHIIMKSARWVSRKRTPPPVNIVMAALGLVVDVVGE 533 QID+TLGPMTQ+IW M+ LRFS F+ V+M SFA+AF A+F C + +D T ND L F T S + F A LG P F+L++ E C P + + G+ ++V+Y+ +LST HS + N + EFHLAR +I +SAR V+R+R PPP+N+V LG ++D E Sbjct: 1235 QIDATLGPMTQVIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCGEFEDPTCNTNDDPDFPLRDAFGTFGRSFVTVFSAALGGPDFELYEAAGSECRCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTE 1421 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10647.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10647.422.1 >prot_H-paniculata_contig10647.422.1 ID=prot_H-paniculata_contig10647.422.1|Name=mRNA_H-paniculata_contig10647.422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp MTQIIWTMLFHLLRFSVFLVVIMTSFAVAFFAMFSICRDDDDETELNDLGback to top mRNA from alignment at H-paniculata_contig10647:2547..5633+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10647.422.1 ID=mRNA_H-paniculata_contig10647.422.1|Name=mRNA_H-paniculata_contig10647.422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3087bp|location=Sequence derived from alignment at H-paniculata_contig10647:2547..5633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10647:2547..5633+ >mRNA_H-paniculata_contig10647.422.1 ID=mRNA_H-paniculata_contig10647.422.1|Name=mRNA_H-paniculata_contig10647.422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig10647:2547..5633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |