mRNA_H-paniculata_contig10647.421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 129 bits (323), Expect = 4.230e-31 Identity = 82/180 (45.56%), Postives = 104/180 (57.78%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSASPRKTWKRTTEGKSPLGKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEV-FFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 VML+LF S V +KE D IP E++FYIF GLLWREVLEF +G+P RT EG G+ + + + G NR+ +A RY+F+DTWN +DT TI IF AF R++ ++F +E F A+ F A APLLFSRLL LSQID+TLGPMTQV Sbjct: 893 VMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRTSGGPRTEEG----GRVEPGISHLGAGSNF----NRMVSAFTRYVFYDTWNFMDTSTICCIFVAFIFRMI-----------------ARFDSEFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQV 1047
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.990e-30 Identity = 80/187 (42.78%), Postives = 109/187 (58.29%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSASPRKTWKRTTEGKSP------LGKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGV--GWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 VML LF SCV +++S IP E+ FY+F G LWRE+LEF +G+P + K EG G + K + G ++ RV++A+ RYLF+DTWN+LDTLT+ +F AF R++G+ G T+ D FF+A+ FLA APLLF+RLL LSQID+TLGPM Q+ Sbjct: 1003 VMLGLFCSCVKLQDSYRIPPAEVAFYVFMAGTLWREILEFCDGVPARHRRHRKNKHIKEGNQANMATAVQGASSKRSDMVDYGQGRGLK--RVASAITRYLFYDTWNLLDTLTLSTVFLAFVFRLLGIREFGGPTDPGD------------YFFVAQFFLAVSAPLLFARLLRLSQIDNTLGPMIQI 1175
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.300e-29 Identity = 83/190 (43.68%), Postives = 105/190 (55.26%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSA-SPRKTWKRTTEGKSPLGKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQVSDGGRLSCHT 568 VML+LF V +KE D+IP E+ FY+F GLLWRE+LEF +G+P P K +G + G + F + R NR+ +A RY+F+DTWN LDT TI I AF R++ L DD+ F A+ F A APLLFSRLL LSQID+TLGPMTQV R+ HT Sbjct: 1019 VMLVLFCFSVLLKEHDSIPWGEVTFYVFAAGLLWREILEFRDGMPARRHKPPKRQVSKNDGSTRTGSEQPLSFPRISRLGTGNRFNRMVSAFTRYVFYDTWNFLDTSTIGCILVAFIFRMIAL-------DDKF----------FLFHAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVI--WRMMSHT 1189
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.970e-28 Identity = 80/182 (43.96%), Postives = 102/182 (56.04%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSASPRKTWKRTTEGKSPL--GKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEV-FFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 VML+LF S V +KE D IP E++FYIF GLLWREVLEF +G+P R + G P G+ K + + G NR+ +A RY+F+DTWN +D TI I AF R++ ++F +E F A+ F A APLLFSRLL LSQID+TLGPMTQV Sbjct: 261 VMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRH------RISRGLGPEVGGRVKPGISHLGAGSNF----NRMVSAFTRYVFYDTWNFMDMSTICCILVAFIFRMI-----------------ARFDSEFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQV 415
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 119 bits (299), Expect = 7.200e-28 Identity = 77/185 (41.62%), Postives = 106/185 (57.30%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSASPRKTWKRTTEGKSPLGK---AKKWVFTI---VLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 VML LF +CV +++S IP E+ FY+F G LWRE+LEF +G+P A R+ A +W + + + RV++A+ RYLF+DTWN+LDTLT+ +F AF R++G+ G + FF+A+ FLAA APLLF+RLL LSQIDSTLGPM Q+ Sbjct: 1005 VMLGLFCACVKLQDSYRIPPAEVAFYVFMAGTLWREILEFCDGVP--ARHRRXXXXXXXXXXXXXXXXTAAQWASSKRSDTVDYEQGRGLKRVASAITRYLFYDTWNLLDTLTLSTVFLAFIFRLLGIR----------EFGGPADPGDYFFVAQFFLAASAPLLFARLLRLSQIDSTLGPMIQI 1177
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.380e-25 Identity = 70/187 (37.43%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 2 VMLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLS--------ASPRKTWKRTTEGKSPLGKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 VML L+ S V+++ SD IP EI+FY+F GLL+RE+LEF + LP S +SP + +G+ + + + RV++ ++RY D WNILDT +I + AF RI+ + + I + + FF+AR LAAIAPLLF+R+L L+Q+D+T GPMTQ+ Sbjct: 1301 VMLGLYWSSVAIQYSDIIPADEILFYLFAAGLLFREILEFRDALPPSVSSSSSPTSSPSDATMSSDDGEDHGSSEPDSLAARAREERSGLSQRRVTSGLRRYFSKDNWNILDTASIFCVMLAFIFRIIAYIADFAQAATTIL--GNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQI 1485
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.600e-14 Identity = 64/165 (38.79%), Postives = 78/165 (47.27%), Query Frame = 2 Query: 77 YIFGLGLLWREVLEFWEGLPLSA-SPRKTWKRTTEGKSPLGKAKKWVFTIVLGHTHAVRENRVSTAMKRYLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQVSDGGRLSCHT 568 + F GLLWRE+LEF G+P P K E + G + + R NR+ + +F+DTW LDT TI I AF R+ L DD+ F AR F A AP LFSRLL LSQID+TLGPMTQV R+ HT Sbjct: 381 HTFYKGLLWREILEFRNGVPARRHKPPKRQVPKNEDNTRAGSEQSLSSPRISRPGTRNRFNRIVSTFTWNVFYDTWKFLDTPTIGCILVAFIFRVTTL-------DDKF----------FLFHARFFYALSAPRLFSRLLVLSQIDATLGPMTQVI--WRMMSHT 526
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 6.790e-11 Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 2 Query: 281 YLFHDTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 Y+F+DTWN LDT TI + F R++ L DD+ F A+ F AA APLLFSRLL LSQID+TLGPMTQV Sbjct: 1178 YVFYDTWNFLDTSTIGCLLVTFVFRMIAL-------DDDF----------FLFHAQFFYAASAPLLFSRLLVLSQIDATLGPMTQV 1246
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.350e-7 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 Query: 293 DTWNILDTLTIVLIFAAFTARIVGLGVGWTEKDDEIAEGASKFQTEVFFLARVFLAAIAPLLFSRLLFLSQIDSTLGPMTQV 538 + WN+++ + + L+ AAFT R+V G D I E E FFLA++F A APL FSR+LFL+QID LG M Q+ Sbjct: 933 ELWNVVEAVLLGLVCAAFTFRMVAFG------SDVIEE-------EAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQI 1001 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10647.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10647.421.1 >prot_H-paniculata_contig10647.421.1 ID=prot_H-paniculata_contig10647.421.1|Name=mRNA_H-paniculata_contig10647.421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp MLMLFVSCVSVKESDTIPIQEIVFYIFGLGLLWREVLEFWEGLPLSASPRback to top mRNA from alignment at H-paniculata_contig10647:675..2614+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10647.421.1 ID=mRNA_H-paniculata_contig10647.421.1|Name=mRNA_H-paniculata_contig10647.421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1940bp|location=Sequence derived from alignment at H-paniculata_contig10647:675..2614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10647:675..2614+ >mRNA_H-paniculata_contig10647.421.1 ID=mRNA_H-paniculata_contig10647.421.1|Name=mRNA_H-paniculata_contig10647.421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig10647:675..2614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |