mRNA_H-paniculata_contig10643.419.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10643.419.1
Unique NamemRNA_H-paniculata_contig10643.419.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10643.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10643contigH-paniculata_contig10643:1616..6139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size194
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10643.419.1prot_H-paniculata_contig10643.419.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10643 1616..6127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.1398292-CDS-H-paniculata_contig10643:1615..16401622928769.1398292-CDS-H-paniculata_contig10643:1615..1640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 1616..1640 -
1691480612.235919-CDS-H-paniculata_contig10643:1615..16401691480612.235919-CDS-H-paniculata_contig10643:1615..1640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 1616..1640 -
1622928769.1590512-CDS-H-paniculata_contig10643:3317..33741622928769.1590512-CDS-H-paniculata_contig10643:3317..3374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 3318..3374 -
1691480612.2469811-CDS-H-paniculata_contig10643:3317..33741691480612.2469811-CDS-H-paniculata_contig10643:3317..3374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 3318..3374 -
1622928769.1736002-CDS-H-paniculata_contig10643:6029..61271622928769.1736002-CDS-H-paniculata_contig10643:6029..6127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 6030..6127 -
1691480612.2652733-CDS-H-paniculata_contig10643:6029..61271691480612.2652733-CDS-H-paniculata_contig10643:6029..6127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10643 6030..6127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.1976295-UTR-H-paniculata_contig10643:6127..61391622928769.1976295-UTR-H-paniculata_contig10643:6127..6139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10643 6128..6139 -
1691480612.2784464-UTR-H-paniculata_contig10643:6127..61391691480612.2784464-UTR-H-paniculata_contig10643:6127..6139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10643 6128..6139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10643.419.1

>prot_H-paniculata_contig10643.419.1 ID=prot_H-paniculata_contig10643.419.1|Name=mRNA_H-paniculata_contig10643.419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MEDLCVQSRSMESLAAAKKHRFNEVGRSSSKHRSWRHAVKRLLGEKPNEY
SRRIMRHSWH
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mRNA from alignment at H-paniculata_contig10643:1616..6139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10643.419.1 ID=mRNA_H-paniculata_contig10643.419.1|Name=mRNA_H-paniculata_contig10643.419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4524bp|location=Sequence derived from alignment at H-paniculata_contig10643:1616..6139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTCCGGGAAATGGAGGATCTTTGCGTGCAGAGTCGATCAATGGAGAG
TCTCGCCGCCGCGAAGAAACATCGATTCAACGAGGTCGGAAGGTCATCAT
CGAAGCACAGGTAACGCACGTCTGTGTATATATGCCTTCAATGCAGCAGT
ATCCCACAACCACACTACTAGTTCACAACGACACAGCTTTCCTGAGTAAA
GTTGTAATGTGCAGTATGTTGAATACCACATATACTGTGATATACTGTGC
GTGTCCTGTTTTCATTATGTGAACTGAACAAAAAAAAGGATCTTGCATAA
TATTTCACGGAGCAACTTGAACCTAGACGCTTACAAAACTGCACATATAA
CAGTGTATTCTAAAAAAAACGAGGTTCAACCCCAAACAGTGCTTTCCCTA
AGCTAAAGTCATGACCAATTACATTTATTTCGAAAACCCAGTGCCCCTCT
ATCCCAGTGTAACTATTTCAGGGCTTTTCGAAACTTCCATGCCCCCACAA
CGCTGTGCGAAAGCGTTTTTTACTATTTCGAGGGGGAAATCGGCATTTGA
GCTCAAAAAGAGTGCTTACGCATAACGCTGGAGGGGATTGGAAGTAGTTA
AAACCCCCTAATATTTTGCCGCGGGACGATTTAAAAGCCGAACTTCATTT
TGGAAAATACACTGTTAGATCTTGGACCAGACTAGCTCTTCCCATCCATC
CAGATCTCGGTACGTGATGACAGCGAGTAGCTTCTGACCGTGCAGTCGTC
CGTAATTCTAAGGTACTGCATATAACGTGCTGTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTCGTCCATCTAGCAACATATCTGCACATTTACACA
TCTATATATCTAAAAGAGTATATATATAATATCCATGTCTGTAGATATAT
AGAGAGAGATAGGGAGAGCTTGTCAAAGATTTGAATGAACGGCTGAAGAC
AGCACTGTGAAGTTAGCTTGCAATGCTGCACGAGCTAGACGTAAACTTTT
GCCAAGTTTTGTAGGTTTTATATAGTATATATAGAGCTCTACCCATAGCT
CTTGCTAGCTATAGCTCCCATGAATTCTGGGGAAAATACCAAAAAATACC
CACGGTATATTTTTTGCCGTCCTTTCCGATCTCAAGTTGACCCCAATAGT
CCTCGACAACAGCGCTAGCCCAGTTCACGAACATGTGCCAGCATTGAGGC
CGTGACAATTGATGCGACTGTTCTGAACGCTGTATTTCCCCACACCCATG
TATCCGCCTCAGTTTGATATATTTTTACTGATAGGTCAACACAAATGATC
CCCCTCGACCCCATTTTGATGTTTACTGGTGCCAGCTTCGATATATATGG
AGTACACAACTACATGTATTTGTACATGACCCCAGCGCGATACGAATATC
CATTCACAAATTCTCACATCAACAGACAGGCGAACCGTACACCAGGGTTC
TTGTTATTTGCACATTTTCGCGTCCTACAGACCAACAACAGGACAATACG
TTGTTGTCGATACGAGCACTACGAGTTTTGTACGTGCTTGATACAGTTTT
TTTCCTTGTTAGATGCAGTTGCCCGCTAGCTGTGCCCCGTGTAGGGTCTA
GGTCCAGATACTTTGTCTTGTGTTTGGCAAGTTGTACGGCATCCTTATGA
CAGCCCCCCCCGCGTCTGAAGGCTTATTTCGACTACCAAAAGCAGACCAA
AGGCAGACACCATATTTACCAATATGGTGTGGGCGGGCAGGTGTGGGTAA
GAATAAGATATGGTAAAAGCGATGGGAGAGCGAGCACGTGTTCATGTACT
CCCGAGTGTAGAGCCCTAGCACTTCTGGTTAGTCGGACGCTATCCTCTCA
CAATGAGGATAGCTAGATCTTAGATATACAACTATATGATAACATGATAA
CAGCAGGTCGCTTGCGCTGTTTCGAATTGTACATGGTTCCCCTGCTAATA
CTGATATACTCCTCCGAACGTCATTTACCTTTGTTCGCCAGGCATGGTCT
TTGTATATTCGTATCCTTTTCCAAATATTAAAAAAATAAATCAAGGTTTA
CTGTACCTGTGGACATAATGAAAAATAGCCATATAAAGATAGGAGCACAA
TCAGCCAAATATTGCGTGGTTTCGAGAAACCCGAGGAATTCCCCATGTTC
CCCCGGGTGAAGTGTTCATCGGTTCTAGTTCTCACTCAATCCCTCTCTCC
CTCCTCGAACCACCATGATGCACGAATGGTGTGGTCGAGGAGTGCATGGA
ATAGGTTGCGTTGTTTGTCCCTGTCGATCCCCGCCACGAAAGAAAAATGC
AAGATTTTCGTAACCTACAGAGTATTGCTTCAAAAAACGGTTTAGAGGCA
CTGTATGTTGTATGCGACGAGTACTACGGTGGGCGCGATATAACGTTGAA
AAAGAATTCACCATCTGCTCAAGTAGTAGACATGAGCCAACGCCCCTTGA
CGACATTAGCAATGCATCATATCACATGTATGCAAAACCCCATAAGGGTT
GGTTTACGGTACTGCAACCACCCCTTTGGGCCGTCGGTGCCTGTTGATAT
TTATCTCTACGTTGCATGCCGCTTGGGTGCTCCTTGTACGTTTGCGCGAA
GATCTCCGAAGTACCTTTGTTCGTCCGTCCCGAAGATGCTGAGCATATCC
CATTTTGTTTTACGTTTATTGTCATGTTTTCTCCCCCTTGTTCGTCCGTC
CCTGCCTCCGCCCTCACCCCCTATCCCCGGTCTGTGGTTCGTGTCCAACG
CGTTCTCAAAATTAGGTCGTGGAGGCACGCCGTGAAGAGACTGCTCGGCG
AAAAGCCAAACGAGTACTCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTATGCTTTACTCGGGACTTTTCGTTTGTGCGAGTTTTGGATTT
AGACCGGGAGGATATTCACGTGCTGTCGGGAGTAGCGGGCACACTATTGT
ACACGGGTTAAAGCAGTTTTCCTTGCAAGAGATACGACAGTATCGAGCCA
AGAGGGTGTAGCTTTTTTTCCAATACGACCCCGATGCTGACATCGATGTT
GACACCCATACAGGGAAAGAACCACAGGACAGGCAGAGAGCTCATGTACG
CGAAGGAATGAAAGGGTTGTGACAGAGGGGTGCCGAAGACATTGAAAAAC
TGAAGGCAATCTTTCCAACAAGAAACGGTTGGATCTCTAGCAAGCTGAAA
AACACGCAAGAACACGTTTTATCAATCGGGAAATTGCCGTGCTGGATATT
TTTGCTTTACAACAAGAATTATCCCCTGCGCGTAAATCGGTTCGAAGTTT
AGATACTTGATACACCGTAATAGTTGACGTGGGGGTAGCTTATAGCTATC
TAGGGCTACGTACTGTGTGGAGTACATTATGTATATGCTGCATCATGTAC
GCAATATGTCGCTCGATGCGAGAGTCTATATTGGTTTTCGTGTTGAAGTC
AGAAGAACGCACGCGGCCTGAAGATAGCAACGGATATGGGAATATAATGG
TGTACAGCAGCGTTAAAAAGAGGCCTCCGGTCAGTTTAGCGTCCGACGGA
GGCAATGGTGAGCCCTCCCGCAGAGACCGCAAGCGCCGTTCCCGGGAGGA
CCACGAATTATTTGTTTTGAGGAGCTACATATAGCACCATTTTCATCGGT
TTCCCTTCATCCCTGGCCCTCTACAAGTTCATGTAGATTGGCAACTGATT
ATTGATAGTATCAGAGGACTACTGAACACTTCTTGTGCACATTGTGAGAC
GGCAGAAAATCGTAATGTTAGTGTAGTGCAAGTATGTCTGTTCACGATTA
CCATAACTGTAACAAAAACAACCCCCAAGATATCGGTTTTTGTAGCGTGT
CATGTTGTCGGAGAAAAAATTCCAACGATCAGCTATCGTTGATGACCCTC
GCCAACATCGTTCCTTTTGCTTGCATTATCATTATGCGTGCAGTCTTATT
CGGTAAACTCTAGTTGCATACGTCTGAAAAAAGCCCTCGTCGAAAATCTG
ACACTCCTTCGCCGCCGCCGCCCCTTACTTGCTGTCGCTCGTGTAGGACG
TAGTGAAAGTATCCTATGGTCCAAAGCATTGACCAACTATAGCAAGTGCC
AAATAGTATCCCTGCGAATGGCTGCGTGTGTGTAGGATCGGAATTGAATG
TATCAAATGTATGGCAGTCAGTAGCCGGGTTGAAAAGACCGGATTTTCAC
CTGCCGGATTAAGGCACCCATAGTAGGCGATAAACGAAATGTACTTTACA
TAGCTGTGCAACTCTGACTAACGTATACCCCGATATCGGTTATACACAAC
GTGATGAATAAGCACTTGCCCTTTTTTATCCCCTTTCATAGATTTTCCGT
TGCCCGACCCAAAACGTAATCATTCCCTTTCAACCAATCCCTCCCAATAG
TCGTATGGCCTGTCTTATTACACGGTATGTTTCGGCACAACCCGAACGCG
ACCCCGCGCCCGCACCCGCACTCCTGCACCCCCGCCCTCGGATAGGCAGA
CGAATAATGCGTCATTCCTGGCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig10643:1616..6139-

>mRNA_H-paniculata_contig10643.419.1 ID=mRNA_H-paniculata_contig10643.419.1|Name=mRNA_H-paniculata_contig10643.419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig10643:1616..6139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATCTTTGCGTGCAGAGTCGATCAATGGAGAGTCTCGCCGCCGC
GAAGAAACATCGATTCAACGAGGTCGGAAGGTCATCATCGAAGCACAGAT
GGAGGATCTTTGCGTGCAGAGTCGATCAATGGAGAGTCTCGCCGCCGCGA
AGAAACATCGATTCAACGAGGTCGGAAGGTCATCATCGAAGCACAGGTCG
TGGAGGCACGCCGTGAAGAGACTGCTCGGCGAAAAGCCAAACGAGTACTC
CAGGTCGTGGAGGCACGCCGTGAAGAGACTGCTCGGCGAAAAGCCAAACG
AGTACTCCAGACGAATAATGCGTCATTCCTGGCATACGAATAATGCGTCA
TTCCTGGCAT
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