Homology
BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Match:
A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)
HSP 1 Score: 55.5 bits (132), Expect = 4.470e-5
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 2
Query: 116 HRRCRVLPQPDSCKRSVPLFWVMKGMPCALCAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKC 322
H R RV + +R G + C C +P+YGV GSKK EFCSQHA+ MV+V NK+C
Sbjct: 39 HHRTRV-----AHRRGXXXXXXXGGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Match:
D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)
HSP 1 Score: 55.1 bits (131), Expect = 4.940e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2
Query: 206 CAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKC 322
C C +P+YGV GSKK EFCSQHA+ MV+V NK+C
Sbjct: 4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.47e-5 / Id = 42.03 Expect = 4.94e-5 / Id = 58.97 Sequence A0A6H5JT00_9PHAE D7FI73_ECTSI
Match Name E-value Identity Description
A0A6H5JT00_9PHAE 4.470e-5 42.03 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FI73_ECTSI 4.940e-5 58.97 EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 2 Model size 864 Cds size 681 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1062.401.1
>prot_H-paniculata_contig1062.401.1 ID=prot_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MKGMPCALCAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKCSNQ back to top mRNA from alignment at H-paniculata_contig1062:26942..29599+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1062.401.1 ID=mRNA_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2658bp|location=Sequence derived from alignment at H-paniculata_contig1062:26942..29599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CGCGAAGGAAAGGGACACAGGAGGTCATGTTTATTGAAGAGTGTCCCATA
CTAATGGAAACTTAACAG GTGAGCTGGGAGAACGTCGAGAGCACTTGCTT
GGTGTCTGTGAAGTTATTCCAAAATCGGCAATCACCATCGCCGATCATCA
TCATGAAATGCAGTTGCTCGCGAATGGTTAAGTCTATGCATTATACTGTT
CGTTCCTTACACAGCCAGTGCTTATCCCTTATCATTCCACTCCACTCTAC
TCTATGATACTACACTTCACTGTGCTGTACGCCAGGGTGTATATGGTTCG
GAACATGTTATGCTCATATGAGATATTGAGCCGCGTTCCCAGTGACCAGA
TATCAACGCTTGGTCTGTTGCAAATCATTCCTGAATATTGCCGTCAATCA
GCCAGCCAGTCTGTACACAGAATCACGAAACACGCTATAATACTTTCCAT
CTATGCTCCAAGAAAAGAATCATCAATCAAATGAGTGATTTTTCGTGCGA
GGCAGTTGTTTTCCCTCCCAGACCATGAGTCGAGCAAAGCGTGGGCGTTT
CGAATGAGGAGATCGGCAGCGAAACCATTTTAGCCCTATCAGCGTCGTAA
GCTGTTTCGGAACGGAAAATGCCTTCAACGACAAATGGCAAGCGCTCAGT
CTTCGTCGGCAGAACTAGGATTGCTACATTTAAAAAATATACGCGGCCGA
ACGTTACTTGGCTGGAAGAGGTTGCCCTGCAATTGATCGGGGGGAAAGAG
GATATTTGGGGTGGGCAACAAATCGTGGTAATGTCCGTTGCGTGCCACGT
CTGTTTTTCATATTACTTAGCAGGCAGAGGTAGGCCTGAAATTGGTCGCG
AGGGAGGAGAATTTCAGATGTGAAACGGATCTCGGCAAATACGACCAGCG
CAAATACTTATCGAGAATATCCAAAGTGGCTATTTCATGGCAAAAATTAG
GCTATCTCACGATCTTTTTGATTGGTCCATTTTGATGGGAGCAGAGGAAG
AACTTTGCTTGTTATGTAATCAAGTACTGCTGCATGGCTCGACAACGGCG
ACGACGCGTTGAGCCCGCGAACATTTTCTGGAAGGCCTTGATCACAGGCA
AAAATTGTCCTACTCCTGGCCCTGACCGTATCGGGAGCTAAGCGCACAAA
CAAAAGATTAGAAAAATAGAAAATGTGGCGGCTGTCTGCACTAACGTAGT
AGCACATCAGAGTACACAACCATCATTCGTTAAGGCATTGGCTGTTATGA
GCTTCGTATTATGTTTGGGTGGCTTGAATTTTTGGGACCGAACCGGGAAA
CAAGTGGTAAGAATTGCGTGGGGTAAGAACATTGTCTCTACCGGTTAGAA
AAACAACCCCTAACGAAGCAGTGGTGTGTGTGCCACACAAAGCCACGTAC
TGGGGGTATGGATTCAAGCATTCCACGTGCTCAGGTACATACGATTCGTC
ATTTTACTGTCTGTAGTTATTCACAGACTGTCTTGAGAAATATATTCGTG
CATATTTAGTCGAACCCATTTTTATCCCTGGACCCTGAATAGGTATATAA
TGTTTGTGTTTGGCTGGTACAGCTACCTCCCGTTTTTGTGGTTCGAAGGT
GGAGGGTTCATCGGGGCTGGTGCTTCCTGCGCCGGTGTTTCCGTGACGGA
GCACGATCCATGCTTGTGCACAACCGTTTCTTCGAGAAGTGTACCAACAG
GTAGCACCATCTTCTCACAGTACCGATGCAGCCTACCCTTCTTGCCTCCT
CTTGTCATGGAATTCTAGTCCATCCCACTCACTCTGGTCGCCTTGAGCGC
CCAACAGGATGTTGACAATGTTCGTCTTACTATGGAATGTCGCCTGTTTC
TTGCGCTGGTTCAGGGATCTGCTGGTGCACCAAAGGCGAGCTGTTTCGTC
TGTGAGACTGTCACCGACGGTGTAGAGTCTTGCCGCAGCCGGACTCGTGC
AAACGTTCGGTCCCGTTGTTTTGGGTC ATGAAGGGGATGCCTTGTGCACT
ATGCGCTGGCGTAAGATGCCTAAATCAGCCGTCTTATGGTGTAATGGGCA
GCAAGAAGATGGAGTTCTGCTCCCAGCACGCAAAGGCAGAAATGGTTGAT
GTACTGAACAAGAAGTGCAGCAACCAGGGCTGCTCCAAGAGGGCGTCGTG
CGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAGCACAAAGTGG
CAGAAATGGTTGATGTGGTGAGCAAGAAGTGCAACAACTCGGGCTGCTCC
AAGAAGCCGTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTC
CCAGCACGCGGAGGCAGAAATGGTTGATGTGGTGACCAAGAGGTGCAATA
ACTCGGGCTGCTCCAAGCAGCCGTCGTACGGTGTAGCGGGCAGTAGGAAG
GCGGAGTTCTGCTCCCAGCACGCGAAGGCAGAAATGGTTGATGTGGTGAA
CAAGAGGTGCAACAACTCGGGCTGCTCCAAGCAGCCGACGTACGGTGTCG
TGGGCAGTAGGAAGGCGGAGTTCTGCTCCCAGCACAAAGTGGCAGAAATG
GTTGATGTGGTGAACAAGAAGTGCGGCAACCAGGGCTGCTCCAAGAGGGC
GTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAGCACA
AAGTGGCA back to top Coding sequence (CDS) from alignment at H-paniculata_contig1062:26942..29599+
>mRNA_H-paniculata_contig1062.401.1 ID=mRNA_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig1062:26942..29599+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top