mRNA_H-paniculata_contig10613.399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.520e-15 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEPLLFGMVLGLIPVTLIGLF AAFLQYRRGNKLGL Sbjct: 1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI) HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12 Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEPLLFG+VLG++PVT+IGLF AA+LQYRRGN++GL Sbjct: 1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQIGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH) HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12 Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEPLLFG+VLGLIPVTL GLF AA+LQYRRGN+ GL Sbjct: 1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQFGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CCX2_9RHOD (Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCX2_9RHOD) HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12 Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 M+EPLL G+VLGLIPVTL+GLFSAA+LQYRRGN++G+ Sbjct: 1 MVEPLLSGIVLGLIPVTLLGLFSAAYLQYRRGNQIGM 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: W0RYK9_PORPP (Cytochrome b6-f complex subunit 5 n=15 Tax=cellular organisms TaxID=131567 RepID=W0RYK9_PORPP) HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 M+EPLL G++LGLIPVTLIGLF AA+LQYRRGN+LGL Sbjct: 1 MVEPLLSGIILGLIPVTLIGLFVAAYLQYRRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B2XT41_HETAK (Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT41_HETAK) HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEPLLFG+VLG+IPVTL GLF AA+LQY+RGN+LGL Sbjct: 1 MIEPLLFGIVLGMIPVTLTGLFVAAYLQYKRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR) HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12 Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEPLLFG+VLGLIP+TL+GLF AA+LQ+RR NKLG+ Sbjct: 1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANKLGI 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: K8GJW3_9CYAN (Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria TaxID=2 RepID=K8GJW3_9CYAN) HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11 Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 MIEP+L G+VLGLIPVTL GLF AA+LQYRRGN+LGL Sbjct: 1 MIEPILLGIVLGLIPVTLAGLFVAAYLQYRRGNELGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A098TN63_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TN63_9CYAN) HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11 Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 M+EPLL G+V+GLIPVTL+GLF AA+LQYRRGN+LGL Sbjct: 1 MVEPLLTGIVMGLIPVTLLGLFVAAYLQYRRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: M1K3W3_DIALT (Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3W3_DIALT) HSP 1 Score: 60.1 bits (144), Expect = 2.350e-11 Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111 M+EPLL G+VLGLIPVT +GLF AAFLQYRRGN+LG+ Sbjct: 1 MVEPLLSGIVLGLIPVTALGLFVAAFLQYRRGNQLGI 37 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10613.399.1 >prot_H-paniculata_contig10613.399.1 ID=prot_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL*back to top mRNA from alignment at H-paniculata_contig10613:5184..5297- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10613:5184..5297- >mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |