mRNA_H-paniculata_contig1061.398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 Query: 1 AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
AKR+ L VD KL +AE+R K++EMKGLERTLV+VLVEQQKKLL LLSE G
Sbjct: 2185 AKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSETG 2237
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 8.730e-6 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 4 KRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
KR ++ +D K+ A AE R K+D +K LER +VEVLV+QQKKLL +L++ G
Sbjct: 121 KRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTDAG 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1061.398.1 >prot_H-paniculata_contig1061.398.1 ID=prot_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSback to top mRNA from alignment at H-paniculata_contig1061:27903..28061+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1061:27903..28061+ >mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |