mRNA_H-paniculata_contig10608.396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 329 bits (843), Expect = 6.480e-104 Identity = 195/442 (44.12%), Postives = 246/442 (55.66%), Query Frame = 3 Query: 30 IRQPVLFLVWLLPQTFLVTSLITRPSPARFPAEVLWRNGKNVQHSASNVEKVVGNRREEAAGKASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQG-ASRGGAMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGE-KPDLTASHEVAECMHGCEIYWSR--------SGLKNGEGGRQKSSVASTSQVEQQEG----GGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGFDREGKFVYGNQRGVPYKLKRVNPGDDDDELNWTVGEQHRTPELYAEKMSAIGIVPGQRSGPP*AATAAVSAKGNG 1313 +++ VL L+ ++P L+ S S R + VQ S ++V+ G + +A+VS+LLQ FQGEFDNYDQVV DR AGM GPGGGHEHIHCSL LD +P Q+ R LAVVAAKY+FNGD+++VFRYRLYSFH CP +RG A+MRLWRL+P +E RLRA YDLTSF W +++ + E G +NA+ + ++V E M GCEIYW R + G G K + E+ G GG + F+GLMG+DD GTWV SQN+ GLEIL+KDDL++W D LWVNDRGFDR+G FVYGNQR VPYK++RV G L WT+G +HRT + YAEKMSAIG+ GQR PP A G G Sbjct: 2 MQRVVLLLLQVVPSAGLLVSWTASRS----------RLSQKVQRSCTSVDS-----HTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDD--SNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRHQAGGEDEKSMPGGISGPGKQDANGGAVPERGAGEDAAGGGGKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGP---LEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPVRVAAPAGTGGTG 418
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI) HSP 1 Score: 168 bits (425), Expect = 7.870e-46 Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 3 Query: 939 GGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGFDREGKFVYGNQRGVPYKLKRVNPGDDDDELNWTVGEQHRTPELYAEKMSAIGIVPGQRSGPP 1274 GG + F+GLMGEDD GTWV SQN+ GLEIL+KDDL++W DRLWVNDRGFDR+G FVYGNQR VPYK++RV G L WT+G +HRT + YAE+MSAIG+ PGQR GPP Sbjct: 29 GGGGKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGP---LEWTLGARHRTEKTYAERMSAIGVTPGQRLGPP 137
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: A0A5J4Z4Z5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z5_PORPP) HSP 1 Score: 145 bits (365), Expect = 6.400e-34 Identity = 108/364 (29.67%), Postives = 144/364 (39.56%), Query Frame = 3 Query: 102 PSPARFPAEVLWRNGKNVQHSASNVEKVVGNRREEAAGKASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQGASRGGAMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTASHEVAECMHGCEIYWSRSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGFDREGKFVYGNQRGVPYKLKRV--NPGDDDDELNWT 1187 P R PA W + +S NV A A+ + + F+G+FDNYDQV+E++ G G GGGHEHIHC L+ + E N +++ AKY+FNGD + V+R R+Y +G MR++R E RLRA GY + W GD ++ E + GCE++W R K + Q + F G M G V S M+ IL+KDDL + + LWVNDRGFD G FVYGN+RGVPYK+KR NP L WT Sbjct: 227 PDAQRIPARTSWSS----PYSPENV----------ARRMLRRAMAQRNLDLFMTSFEGDFDNYDQVLENKRLGFTEGEGGGHEHIHCKLSRIGE---------------------------------NS--------------SMIFAKYYFNGDPNSVYRARVYEIFL--DDSDDKGVIEMRIYRFYAETEARLRACGYRINEIDW-------------TGD---------------DLYEWLQGCEVFWERRKFKTAQALEQSEIIGPF-------------FFRGFMAGG--GCTVFSPTMKS-RILVKDDLILTGNELWVNDRGFDENGHFVYGNRRGVPYKMKRTSCNP-----HLEWT 478
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 135 bits (339), Expect = 4.390e-31 Identity = 106/362 (29.28%), Postives = 148/362 (40.88%), Query Frame = 3 Query: 255 LLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQGASRGGAM--MRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTASHEVAECMHGCEIYWSRSG--------LKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNM-QGLEILIKDDLKVWSDRLWVNDRGFDREGK-----------FVYGNQRGVPYKLKRVN-----PGDD------DDELNWTVGEQHRTPELYAEKMSAI 1241 L FQG+FDNY+QVV DR G+ G GGGHEHIHC+L + G + E + R + A ++FNG+ +FR+R Y G G A+ M+L L P +E+ LR + S W GE+ + P + + GC++ W L N + + + S F M G V S +M G ILIKD+L +W D+ W+NDRG+D +G+ FVYGN+RGVPYKL+RV+ G + EL WT+G +RTP Y K+ AI Sbjct: 80 LTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTLVPCPDF-------------------------------------GDDAEGDTRRSRWILAAFYFNGNPQQIFRFRAYQLWAPDHDGMDDGSAVVRMKLNTLSPILEQALRKRSEEPCS--WWRTAWKVWSGEDKKKFHEDII---PWSQFIPSLVSPLQGCDVLWEEDWDAAKHSYLLDNAYNSDESNDITSFCDTS----------FHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: A0A7S4N064_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N064_9STRA) HSP 1 Score: 122 bits (307), Expect = 6.220e-27 Identity = 107/376 (28.46%), Postives = 160/376 (42.55%), Query Frame = 3 Query: 255 LLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQGASRGG---------------AMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTASHEVAECMHGCEIYWSRSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGF----DR--------EGKFVYGNQRGVPYKLKRV--------NPGDDDDE-----------LNWTVGEQHRTPELYAEKMSAIG 1244 L+ QG+FDNY QV DR+ GM GGGHE +HC++ ++ L A GA+ GG E E A V + ++F+G +FR+R+Y+ + C RGG A MRL+ L PS+E LRA D +W + +++ E+ N + GC++ W+ + R + + A+ ++ E R +M D G V S G + ++D+L +W D LW+NDRGF DR E +VYGN+RGVPY ++R + GDDDD+ L WT+G R + Y E+M A+G Sbjct: 34 LVSRLQGDFDNYRQVERDRSEGMLPREGGGHEWMHCTVVPVEGRALE------------ALNGAIAAPRGG--------------EGEGEADAAVLSAFYFDGVPERIFRFRMYALNYC------RGGDXXXXXXXXXXXGESARMRLYTLGPSVEGPLRAAP-DAPE-RWGGALMASLLREDG---NEEGXXXXXXXXPRPPPFRLLEGCDVLWTPTPH------RTRHAYAARNRPE--------RALHAVMTND--GAVVPSVMKPGTYLRVRDELSLWEDELWINDRGFAPECDRTDDPGNIGEDDWVYGNRRGVPYAMERAARFSTVDGDGGDDDDDAVFAREVVDAALAWTMGSSWRDEDEYCERMEAVG 356
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 120 bits (302), Expect = 1.090e-26 Identity = 102/346 (29.48%), Postives = 138/346 (39.88%), Query Frame = 3 Query: 255 LLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQGASRGGAMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTASHEVAECMHGCEIYWS--------RSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGFDREG-KFVYGNQRGVPYKLKRV-----NPGDD--DDELNWTVGEQHRTPELYAEKMSAIG 1244 LL FQG+FDNY+QV+ DR G+ GGGHEHIHCSL + E RL A ++F+G +FR+R Y P + L L P +E+RLR D +S+ EE G + G + + C++ WS L G G V + VE SQ M G +ILIKD L +W D LW++DRGFD + +F+YGNQRGVPY+L+RV N G ++L WT+G R+ Y +KM A+G Sbjct: 66 LLDRFQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLVPVSETA--------------------------------------------RLAA-----FYFDGVPGAIFRFRFYDLIPVDESTIDTV-----LHTLHPELERRLRRCP-DPSSWPLFFEEFG-VKGR----------------------VQLLPKCDVRWSWVLDPVQHDYALDEGPNGLHAVMVHGEALVE-------------------------SQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA) HSP 1 Score: 120 bits (301), Expect = 8.160e-26 Identity = 111/404 (27.48%), Postives = 158/404 (39.11%), Query Frame = 3 Query: 219 ASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCPQQGASRGGAM------MRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTA------SHEVAECMHGCEIYWS-------RSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNM-QGLEILIKDDLKVWSDRLWVNDRGFDREG--------------------KFVYGNQRGVPYKLKRV--------NPGDDD---------------DELNWTVGEQHRTPELYAEKMSAI 1241 A+ +++ LL FQG+FDNY QV+ DR +A GGGHEHIHC+L P + Q E R N + + A ++FNG+ +FR+R+Y PQ S + M+L L +E++LR Y W E + + G+N + + H V+ + GC++ W + L E G SS +T G + G G V S ++ G ILIKD+L +W D W+NDRG+D + FVYGN+RGVPYKL+RV N G DD EL WT+G+ R Y EK+ A+ Sbjct: 51 ATSDDSDNYFHHLLSQFQGDFDNYHQVIRDRNHALAPADGGGHEHIHCTLVPC-----PHTAVTQ-------------------EQRQNNDQ-------------WILAAFYFNGNPRQIFRFRMYKLIS-PQDDDSNSNNIDGEKVRMKLHTLSSELEQQLRQ--YSDQPCTWWRETYDVWLNSINEGENESDDNRSNEWNTFRSEGIQHLVSPLV-GCDVLWDPQWDPKKHAYLNVDEYGNDTSSSPTTINKNNNVDGCHATMEAGSA-----GAIVDSISLIPGKRILIKDELSLWEDEFWINDRGYDPDAVVDDNDGGGNDENEDGVGNMPFVYGNRRGVPYKLERVSCISTENTNEGSDDMSSAPPLLLERTIHKQELAWTLGDDFREQTEYEEKLRAV 408
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.270e-25 Identity = 72/195 (36.92%), Postives = 94/195 (48.21%), Query Frame = 3 Query: 30 IRQPVLFLVWLLPQTFLVTSLITRPSPARFPAEVLWRNGKNVQHSASNVEKVVGNRREEAAGKASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCP 614 +++ VL L+ ++P L+ S S R + VQ S ++V+ G + +A+VS+LLQ FQGEFDNYDQVV DR AGM GPGGGHEHIHCSL LD +P+Q+ AKY+FNGD+++VFRYRLYSFH CP Sbjct: 2 MQRVVLLLLQVVPSAGLLVSWTAARS----------RLSQKVQRSCTSVDS-----HTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHACP 177
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: W7TJG7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG7_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.890e-24 Identity = 104/335 (31.04%), Postives = 140/335 (41.79%), Query Frame = 3 Query: 213 GKASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSFHPCP--------QQGAS-----RGGAMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLTASHEVAECMHGCEIYWS---------RSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNMQGLEILIKDDLKVWSDRLWVNDRGFD-REGKFVYGNQRGVPYKLKR 1148 G + + + L+S FQGEFDN QV +RA G+ AG GGGHE IHC +L+ L L +L G +S L V A Y+F+G VFR R+YSFHP P + G+S A MRL R P E +R YD+ Q E N + +V E + GC I WS + + NGEG R + + Q E +EG L V SQ + + I+DDL + +D L VNDRG D R G+ VYGN +G+PY+++R Sbjct: 76 GATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHC---VLEPLELAHGVL-------------------GNDS-----------------LFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQ----EPCNQLA---------------------QVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREG-----FCL-----------VDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQR 330
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Match: A0A1E7FNR9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNR9_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.250e-21 Identity = 100/385 (25.97%), Postives = 150/385 (38.96%), Query Frame = 3 Query: 213 GKASHPEAEALVSDLLQCFQGEFDNYDQVVEDRAAGMAAGPGGGHEHIHCSLTLLDELLLPKQILRQQHGERRASKGAVEGRGGGRESRSNQETRGAELELEERLLAVVAAKYFFNGDASIVFRYRLYSF------HPCPQQGASRGGAMMRLWRLIPSIEKRLRATGYDLTSFQWQEEEVGNIMGEEHVGDNNAAAGEKPDLT-ASHEVAECMHGCEIYWSRSGLKNGEGGRQKSSVASTSQVEQQEGGGEERLFLGLMGEDDEGTWVASQNM-QGLEILIKDDLKVWSDRLWVNDRGFDR-EGKFVYGNQRGVPYKLKRV--------------------------------NPGDDDDELNWTVGEQHRTPELYAEKMSAIG 1244 G++SH E + L + FQG+FDNY QVVEDR G+ GGGHEH HC+L + E RL A +FF+G+ + +FR+R Y + Q ++ MRL L P +E+ L++ D S+ ++ E V N++ + ++ + CEI WS S + +G +E + L G V + + G++I I D L ++ ++NDRGFD G F+YGNQR +PY+L+RV NP EL WT+G ++RT E Y K+ IG Sbjct: 85 GESSH---EKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLVPVTE--------------------------------------------STRLAA-----FFFDGNPNRIFRFRYYELLTPTIINDVDHQHSNNVTVEMRLNTLHPELEQLLKSHSTDPLSWP----DIFKNFQHEGVSSNSSXXXXXXXXSDEKNQKVIPLSKCEIVWSFD-----------KDPIQHSYISSDDGKDDEAENMSLHAVMVHGEQVVNSTIVPGMQIRILDQLSLYQHVFYINDRGFDPITGAFIYGNQRDIPYRLERVSNILPSATSAADXXXXXXSTADRRERLQLEVINP-----ELEWTIGPKYRTIEEYDSKLKVIG 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10608.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10608.396.1 >prot_H-paniculata_contig10608.396.1 ID=prot_H-paniculata_contig10608.396.1|Name=mRNA_H-paniculata_contig10608.396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp MLAIRQPVLFLVWLLPQTFLVTSLITRPSPARFPAEVLWRNGKNVQHSASback to top mRNA from alignment at H-paniculata_contig10608:705..4620- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10608.396.1 ID=mRNA_H-paniculata_contig10608.396.1|Name=mRNA_H-paniculata_contig10608.396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3916bp|location=Sequence derived from alignment at H-paniculata_contig10608:705..4620- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10608:705..4620- >mRNA_H-paniculata_contig10608.396.1 ID=mRNA_H-paniculata_contig10608.396.1|Name=mRNA_H-paniculata_contig10608.396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at H-paniculata_contig10608:705..4620- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |