mRNA_H-paniculata_contig10602.394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A6H5L6I9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6I9_9PHAE) HSP 1 Score: 232 bits (591), Expect = 8.280e-69 Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRPVPL 450 +ADVPIVKLNPLNIL VKA+GEKELRE GI Y +VRPCGLND HPRGRPIFSVGD AAGRICR+DVADVL RCLGTPEATGKTFEV SLPG ++V K N+D ALA LPTDE LSKDPEML+N R+ TYPVLTQLRPVPL Sbjct: 710 SADVPIVKLNPLNILTVKAQGEKELREVGIPYVVVRPCGLNDDHPRGRPIFSVGDTAAGRICREDVADVLVRCLGTPEATGKTFEVQSLPGFEKVASSVKTNNKGNIDQALAGLPTDESLSKDPEMLKNFRRYTYPVLTQLRPVPL 855
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A836CQH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQH2_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.160e-38 Identity = 77/144 (53.47%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRPV 444 AA +PIVKLNP IL++K +GE+ LR + Y IVRPCGLND+ GR I S GD+AAGRICR DVA+ LA CL P AT KTFE+ +LPGL +KA V + LPTD LS P+ LQ +R+ Y +L+QLRPV Sbjct: 250 AAQIPIVKLNPFKILDLKRKGEEALRRTAVPYTIVRPCGLNDKQAPGRLIVSAGDVAAGRICRADVAEGLAACLSEPLATAKTFEMFALPGL----------SKAPVGPPIGSLPTDAQLSS-PDALQAVRRGAYGLLSQLRPV 382
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: L1JNG1_GUITC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNG1_GUITC) HSP 1 Score: 126 bits (316), Expect = 6.710e-32 Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNI 402 AAD+PIV+LNPL IL+VK +GE+ LR +G+SYAIVRPCGLND P GR +FS GD+A GRI R+DVA +L + L +A GKTFE ++LPG + +++ A+ +D A + +VL +LQ + Sbjct: 219 AADIPIVRLNPLGILDVKRDGEQALRSSGVSYAIVRPCGLNDNWPSGRAVFSQGDIAVGRINREDVAQLLVQVLLEKDAQGKTFECVALPGYPSPKSCSLQLARLKLD-GDASISNIDVLDAQYALLQQL 347
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S3Y3H6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3H6_HETAK) HSP 1 Score: 124 bits (312), Expect = 1.640e-31 Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVR 300 AAD+PIV+LNPL IL VKA+GE+ LR G +YA+VRPCGLNDQHP GRP+ S GD+A GR R D A +LA L P A GKTFE +++ GL + R Sbjct: 202 AADIPIVRLNPLGILGVKAQGEEALRRTGAAYAVVRPCGLNDQHPAGRPVLSQGDMAVGRTSRRDAASLLAAMLFEPGAAGKTFEAIAVAGLPKPR 297
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S3QK24_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QK24_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.260e-31 Identity = 69/144 (47.92%), Postives = 87/144 (60.42%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRG-RPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRP 441 +AD+PIV+LNP NILN+KA+ E+ LR++ + Y I RP GLND+ P G RPIFS GD+A GRI R DVA +L CL TP+ATGKTFE SL G P +V AL++L D D + TY + QL P Sbjct: 208 SADIPIVRLNPFNILNIKADSEERLRQSRVPYTIFRPTGLNDKWPAGARPIFSQGDVAVGRINRADVAKILVDCLSTPDATGKTFEAFSLQGY---------PPAPSVSTALSRLQKDS----DGPLSDATLSCTYSAMQQLLP 338
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S1TVT4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVT4_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.360e-31 Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRP 441 AAD+PIV+LNP +L++K GE+ LR G+ Y +VRP GLND+H GRP+ S GD+A GRI R D A VL R LG PEA GKT EV ++PG + P ++ L L T + + P + + +A Y +L QL P Sbjct: 60 AADIPIVRLNPFGVLDLKRRGEEALRATGVPYCVVRPTGLNDKHEDGRPVLSQGDVAVGRINRKDAAYVLTRILGEPEAVGKTLEVFAVPG-------ALYPKPRSLGRLLEAL-TPDADAAGPALSEEAVEAQYRILQQLLP 194
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S0F6W7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F6W7_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.350e-30 Identity = 73/144 (50.69%), Postives = 90/144 (62.50%), Query Frame = 1 Query: 13 AADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRG-RPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRP 441 +AD+PIV+LNP IL VKA+ E++LRE G +YAIVRP GLND P G RPIF+ GD+AAGRI R DVA VL L TPEA KTFEV+ + R +IRPA L+KL D V + + ATY ++ QL P Sbjct: 85 SADIPIVRLNPFGILGVKADSEQKLRETGANYAIVRPAGLNDNWPIGSRPIFTQGDIAAGRINRQDVATVLVDVLSTPEACHKTFEVIGVCNYPPAR--SIRPA-------LSKLQPDGVA-----LSMDHLSATYTIMQQLLP 214
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S1YAG4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YAG4_9STRA) HSP 1 Score: 118 bits (295), Expect = 4.840e-30 Identity = 69/143 (48.25%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 16 ADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRG-RPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRP 441 AD+PIV+LNP IL++K E E++LR++G+ Y IVRP GLND+ P G R I S GD+AAGRI R DVA +L L PEATGKTFE + L G P ++ AL KL DE PE + ATY + QL P Sbjct: 73 ADIPIVRLNPFGILDIKRESEEKLRQSGVDYCIVRPAGLNDKWPAGSRTIVSQGDVAAGRINRRDVATLLVNTLSAPEATGKTFEAIGLSGY---------PPATSMGPALEKLRLDEHGPPTPEEVM----ATYTAMQQLLP 202
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A0G4EAH5_VITBC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAH5_VITBC) HSP 1 Score: 120 bits (300), Expect = 1.050e-29 Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 1 Query: 10 QAADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRGRPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLP 282 + D+PIVKLNP NIL K EGE LR++G+ Y IVRPCGLND H RGRP+ GD+A GRI R D A+V+ L PEATGKTFEV ++P Sbjct: 187 EVTDIPIVKLNPFNILGTKLEGENVLRKSGVPYCIVRPCGLNDAHKRGRPVLVQGDVAIGRINRKDAAEVVCSVLECPEATGKTFEVFTIP 277
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Match: A0A7S2LJ58_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJ58_9STRA) HSP 1 Score: 118 bits (295), Expect = 8.380e-29 Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 16 ADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRG-RPIFSVGDLAAGRICRDDVADVLARCLGTPEATGKTFEVLSLPGLDRVRCVTIRPAKANVDVALAKLPTDEVLSKDPEMLQNIRKATYPVLTQLRP 441 A +PIV+LNP IL VK + E+ELR G Y I RP GLND+ P+ RPIFS GD+A GRI R+DVA +L L TPEATGKTFE +S+ D P ++ VAL +L +L KD + +++ +ATY ++ QL P Sbjct: 224 AGIPIVRLNPFGILGVKKQSEEELRNCGTEYTIFRPGGLNDKWPKNSRPIFSQGDVAVGRINREDVATILVDLLSTPEATGKTFEGVSIANSDGYY-----PPAESLSVALDRL----ILDKD-GVSEDVARATYAIMQQLLP 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10602.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10602.394.1 >prot_H-paniculata_contig10602.394.1 ID=prot_H-paniculata_contig10602.394.1|Name=mRNA_H-paniculata_contig10602.394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp MSCQAADVPIVKLNPLNILNVKAEGEKELREAGISYAIVRPCGLNDQHPRback to top mRNA from alignment at H-paniculata_contig10602:789..2886+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10602.394.1 ID=mRNA_H-paniculata_contig10602.394.1|Name=mRNA_H-paniculata_contig10602.394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2098bp|location=Sequence derived from alignment at H-paniculata_contig10602:789..2886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10602:789..2886+ >mRNA_H-paniculata_contig10602.394.1 ID=mRNA_H-paniculata_contig10602.394.1|Name=mRNA_H-paniculata_contig10602.394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig10602:789..2886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |