mRNA_H-paniculata_contig1060.391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: D7G5V1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V1_ECTSI) HSP 1 Score: 185 bits (469), Expect = 3.740e-51 Identity = 102/184 (55.43%), Postives = 115/184 (62.50%), Query Frame = 1 Query: 13 EEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALV--------------------------GELNELESHSNGSYSAAAAATSTTLEVIPR---FELPRCVSGKLPGGLRYVRANLPP 477 EED + CG+LLCGDTPNVDPDVFRA NNSGLVYDGRLVVD FRTS +VLAGGTLTKFSR HG+G PRHE +NA E THLA+CV QQ+DPL+L G + ++S S A ++ T L PR FE PRCVSGKLPGGL YVRA LPP Sbjct: 879 EEDATRSDFLACGLLLCGDTPNVDPDVFRAANNSGLVYDGRLVVDPTFRTSDPAVLAGGTLTKFSRVHGSGAPRHEKFNASEVGTHLASCVRQQIDPLSLAQSTCADDPDAIVDGCGSERYTDGGGGGGSRQGTAYSGASPFGARSSPVTALAPAPRLPIFEKPRCVSGKLPGGLWYVRATLPP 1062
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A6H5JI39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI39_9PHAE) HSP 1 Score: 179 bits (455), Expect = 2.820e-49 Identity = 100/175 (57.14%), Postives = 115/175 (65.71%), Query Frame = 1 Query: 40 IPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNE-----------LESHSNG----------SYSAAA---AATSTTLEV-----IPRFELPRCVSGKLPGGLRYVRANLPP 477 + CG+LLCGDTPNVDPDVFRA NNSGLVYDGRLVVD FRT+ +VLAGGTLTKFSR HG+G PRHE +NA E THLA CV QQ+DPL L + E +S+G +YS A+ A +S T + +P FE PRCVSGKLPGGL YVRA LPP Sbjct: 676 LACGLLLCGDTPNVDPDVFRAANNSGLVYDGRLVVDPTFRTADPAVLAGGTLTKFSRVHGSGTPRHEKFNASEVGTHLALCVRQQIDPLLLAQSTSADDPDAIFDGCGSERYSDGGXXXGSRQRTAYSGASPFGARSSPTAALGPAPRLPIFEKPRCVSGKLPGGLWYVRATLPP 850
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A421FNH9_9STRA (DUF4821 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNH9_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.200e-24 Identity = 67/161 (41.61%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 4 DSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 D E + G +PC LLC + DPDVFRA N SGLVYDGRLVVD + RT+ VLA GTL +FSR HE Y++RE LA +L+ +DPL+ V + NE+ N ++S+ A P ELP +PGG YV+ ++P T+ Sbjct: 1433 DEEEGNVVEGELLPCEWLLCCQHNDADPDVFRAVNESGLVYDGRLVVDGRMRTTDAHVLAAGTLCRFSRRF-IASKLHENYSSREGGELLARSLLRLLDPLS-VPDANEVAQPVNNAHSSKAPMVPP-----PEMELPVVRCAVVPGGKHYVQISIPALTN 1586
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A3F2RFR1_9STRA (Protein-tyrosine-phosphatase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFR1_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.230e-24 Identity = 67/161 (41.61%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 4 DSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 D E + G +PC LLC + DPDVFRA N SGLVYDGRLVVD + RT+ VLA GTL +FSR HE Y++RE LA +L+ +DPL+ V + NE+ N ++S+ A P ELP +PGG YV+ ++P T+ Sbjct: 1372 DEEEGNVVEGELLPCEWLLCCQHNDADPDVFRAVNESGLVYDGRLVVDGRMRTTDAHVLAAGTLCRFSRRF-IASKLHENYSSREGGELLARSLLRLLDPLS-VPDANEVAQPVNNAHSSKAPMVPP-----PEMELPVVRCAVVPGGKHYVQISIPALTN 1525
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: F0Y0R3_AURAN (DUF4821 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R3_AURAN) HSP 1 Score: 107 bits (268), Expect = 4.060e-24 Identity = 62/154 (40.26%), Postives = 84/154 (54.55%), Query Frame = 1 Query: 40 IPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPR---------HEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLP 474 + CG+LL D ++ D+F A N +GLVYDGRLVVDA+FRT+ +S+ AGG TKFS H + HE YN+ E HLA CVL ++DP ++ +E+ + +P F PR S KLPGGL Y R++LP Sbjct: 957 VECGILLGADADDITSDLFLAVNEAGLVYDGRLVVDAQFRTTDKSIYAGGRHTKFSNVHRRAIAARGGGPTALYHERYNSLELGAHLARCVLDRLDP-----RVDPVEAPP---------------DALPDFGKPRTRSAKLPGGLFYCRSSLP 1090
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A835ZCT4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT4_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.930e-23 Identity = 64/147 (43.54%), Postives = 79/147 (53.74%), Query Frame = 1 Query: 46 CGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 C ++L GD NVDPD F+A SGLVYDGRLVVD RT S+ A GTLTKFSRA H+ Y++RE T LA +L V+P + N+ + LE P+F PR V +LPGG Y+ AN PP S Sbjct: 1266 CRLVLAGDAENVDPDTFQAVLQSGLVYDGRLVVDLSCRTVDPSIYAAGTLTKFSRAFKRASHTHDQYSSRELGTLLAEQLLSAVNP-----QPNQ----------------APPLERPPKFNCPRGVYARLPGGYHYLHANAPPPLS 1391
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A662XS69_9STRA (DUF4821 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XS69_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.860e-22 Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 1 Query: 4 DSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 D +E E+ G +PC LLC + D DVFRA N SGLVYDGRLVVD RT+ VLA G+L +FSR HE Y++RE LA +LQ DPLA+ H+ S+ +T+ P ELP + GG YV+ ++P T+ Sbjct: 1480 DDHEAPEEEGELLPCMWLLCCQHNDADADVFRAVNESGLVYDGRLVVDGHMRTTDAHVLAAGSLCRFSRRF-IAAKLHEHYSSREGGELLARSLLQLFDPLAVPDIETSPSDHAQPSH----VQLKSTVVPPPEMELPVVRCAVVLGGKSYVQISVPTLTN 1635
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: H3GIQ0_PHYRM (DUF4821 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIQ0_PHYRM) HSP 1 Score: 100 bits (249), Expect = 1.480e-21 Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 1 SDSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLALVGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 +D N+ G IPC LLC + D DVFRA N SGLVYDGRLVVD + RT+ VL G+L +FSR HE Y++RE LA +LQ +DPLA+ ++ H ++ A+ + P ELP S + GG YV+ ++P T+ Sbjct: 1414 TDENDTPAVKGELIPCTWLLCCQHNDADADVFRAVNESGLVYDGRLVVDGQMRTTDARVLGAGSLCRFSRRF-IAAKLHENYSSREGGELLARSLLQLLDPLAVPDTSHD--GHQTPAHHTQ--ASKPPMVPPPEMELPVVRSAVILGGKHYVQISIPALTN 1570
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A6A3MDH4_9STRA (DUF4821 domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDH4_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.010e-21 Identity = 63/165 (38.18%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 1 SDSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLAL---VGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 SD ++ + G +PC LLC + D D+FRA N SGLVYDGRLVVD RT+ VL G+L +FSR HE Y++RE LA +LQ +DPLA+ E++ L +H + T T + P ELP + GG YV+ ++P T+ Sbjct: 1412 SDDSDANVVEGELVPCAWLLCCQHNDADADIFRAVNESGLVYDGRLVVDGHMRTTDAHVLGAGSLCRFSRRF-IAAKVHENYSSREGGELLARSLLQLLDPLAVHEAPSEVHPLPAHHTQT-------TKTPMVPPPEMELPVVRCAVVLGGKHYVQISVPALTN 1568
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Match: A0A6A4CY74_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4CY74_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.040e-21 Identity = 63/165 (38.18%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 1 SDSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAKFRTSYRSVLAGGTLTKFSRAHGTGVPRHEMYNAREASTHLAACVLQQVDPLAL---VGELNELESHSNGSYSAAAAATSTTLEVIPRFELPRCVSGKLPGGLRYVRANLPPTTS 486 SD ++ + G +PC LLC + D D+FRA N SGLVYDGRLVVD RT+ VL G+L +FSR HE Y++RE LA +LQ +DPLA+ E++ L +H + T T + P ELP + GG YV+ ++P T+ Sbjct: 1973 SDDSDANVVEGELVPCAWLLCCQHNDADADIFRAVNESGLVYDGRLVVDGHMRTTDAHVLGAGSLCRFSRRF-IAAKVHENYSSREGGELLARSLLQLLDPLAVHEAPSEVHPLPAHHTQT-------TKTPMVPPPEMELPVVRCAVVLGGKHYVQISVPALTN 2129 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1060.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1060.391.1 >prot_H-paniculata_contig1060.391.1 ID=prot_H-paniculata_contig1060.391.1|Name=mRNA_H-paniculata_contig1060.391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp SDSNEEDEKSGLCIPCGMLLCGDTPNVDPDVFRATNNSGLVYDGRLVVDAback to top mRNA from alignment at H-paniculata_contig1060:312..1516+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1060.391.1 ID=mRNA_H-paniculata_contig1060.391.1|Name=mRNA_H-paniculata_contig1060.391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-paniculata_contig1060:312..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1060:312..1516+ >mRNA_H-paniculata_contig1060.391.1 ID=mRNA_H-paniculata_contig1060.391.1|Name=mRNA_H-paniculata_contig1060.391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1060:312..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |