mRNA_H-paniculata_contig10590.386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 97.1 bits (240), Expect = 3.440e-21 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQHFPGAVGKLNKAIYGLVQA 327 +G+K + K K DG++EK K RLVAQGF Q+EG+DY E ++P + SIR+LL AA D E+ D + AFL +++E +Y+++P + AV +L KA+YGL QA Sbjct: 1039 IGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A3S3PZ35_9MAGN (Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PZ35_9MAGN) HSP 1 Score: 95.5 bits (236), Expect = 1.190e-20 Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQH--FPGAVGKLNKAIYGLVQA 327 VG K ++K K+ DG LE+ K RLVA+GF Q+EG+D++E +SP A+IRI+LT A + ++R D ++AFL + E +++E P RF H +P V L KA+YGL QA Sbjct: 1030 VGCKWVYKTKLRADGSLERLKARLVAKGFNQVEGIDFSETFSPVVKPATIRIVLTIALAHNWDIRQLDVKNAFLNGHLHENVFMEQPPRFAHPVYPHHVCHLKKALYGLRQA 1141
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438BZM1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZM1_VITVI) HSP 1 Score: 94.4 bits (233), Expect = 3.020e-20 Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327 +GTK + K K+ ++G + +NK RLVAQGF+QIEG+D+ E ++P SIRILL A V +L D + AFL + +E+Y+E P+ FQ +P V KL KA+YGL QA Sbjct: 492 IGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQA 603
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438BYD0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BYD0_VITVI) HSP 1 Score: 94.4 bits (233), Expect = 3.060e-20 Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327 +GTK + K K+ ++G + +NK RLVAQGF+QIEG+D+ E ++P SIRILL A V +L D + AFL + +E+Y+E P+ FQ +P V KL KA+YGL QA Sbjct: 1033 IGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQA 1144
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438C843_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C843_VITVI) HSP 1 Score: 92.4 bits (228), Expect = 3.220e-20 Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327 +GTK + K K+ ++G + +NK RLVAQGF QIEG+D+ E ++P SIRILL A V +L D + AFL + +E+Y+E P+ FQ +P V +L KA+YGL QA Sbjct: 151 IGTKWIFKNKMDENGVIVRNKARLVAQGFNQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQA 262
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 94.0 bits (232), Expect = 3.840e-20 Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQHF-PGAVGKLNKAIYGLVQA 327 +G K ++K K + DG +E+ K RLVAQGF QIEG+DY E +SP S+R L A K EL D +AFL D++E +Y+++PE F+ V KL K++YGL QA Sbjct: 125 IGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 235
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A251TUQ9_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUQ9_HELAN) HSP 1 Score: 94.0 bits (232), Expect = 4.130e-20 Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERF--QHFPGAVGKLNKAIYGLVQA 327 VG+K L + K DG +E++K RLVAQGF Q G+DY+ +SP +++RI+L+ A + D L D +AFL ++E +Y+E P F +FP V KLNKA+YGL QA Sbjct: 912 VGSKWLFRTKYHSDGSVERHKARLVAQGFSQFPGIDYSHTFSPVVKASTVRIILSLAILNDWRLHQLDVNNAFLHGHLNECVYMEQPPGFINPNFPNHVCKLNKALYGLKQA 1023
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ) HSP 1 Score: 94.0 bits (232), Expect = 4.160e-20 Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQH--FPGAVGKLNKAIYGLVQA 327 +GTK + K K+ +DG + +NK RLVAQGF Q+EG+D+ E ++P +IRILL AA K +L D + AFL I+E +Y++ P F++ FP V KL+KA+YGL QA Sbjct: 1331 IGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQA 1442
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A2N9GB87_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GB87_FAGSY) HSP 1 Score: 94.0 bits (232), Expect = 4.180e-20 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERF--QHFPGAVGKLNKAIYGLVQA 327 VG K ++K K+ DG LE+ K RLVA+GF Q++GVD++E +SP ASIR+ LT AAVK E+R D ++AFL + + +Y++ P + FP V +L++A+YGL QA Sbjct: 1042 VGCKWVYKAKLKPDGSLERLKARLVAKGFSQVDGVDFSETFSPVIKPASIRLALTIAAVKGWEIRQLDVKNAFLHGYLSQPVYMQQPPGYVDSQFPTHVCQLSRALYGLKQA 1153
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438JEY1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JEY1_VITVI) HSP 1 Score: 89.4 bits (220), Expect = 5.000e-20 Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327 +GTK + K K+ ++G + +NK RLVAQGF QIEG+D+ E ++P SIRILL A V +L D + AFL + +E+Y+E P+ Q +P V +L KA+YGL QA Sbjct: 64 IGTKWIFKNKMDENGVIVRNKARLVAQGFNQIEGIDFDETFAPVARLESIRILLAIACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGVQDPRYPNHVYRLRKALYGLKQA 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10590.386.1 >prot_H-paniculata_contig10590.386.1 ID=prot_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp MLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLback to top mRNA from alignment at H-paniculata_contig10590:2940..3266+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10590.386.1 ID=mRNA_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig10590:2940..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10590:2940..3266+ >mRNA_H-paniculata_contig10590.386.1 ID=mRNA_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig10590:2940..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |