mRNA_H-paniculata_contig1058.379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 343 bits (880), Expect = 9.180e-104 Identity = 206/571 (36.08%), Postives = 296/571 (51.84%), Query Frame = 1 Query: 1 QAAFRGYRLRKRLRMLPAREVESAIKALHSNAGGFRLLGMFLIFYALYFALVFTGFDIAFERAVEQGLRGHVNSVKFGPNGDRSHKDVSSLKDFHQWLQAFYLKTYTGTQLEDVCVPCSIRPPDEVCELCDFSSVETGSDSSGQFEGANFDSEPLTEECADCKASWVCGPVIAEACNITLSGGSLEGFNFTRINEEWESAYSDGGLLSTSSSYHLVSYEFLSDLVNMTALAELDMSPEGGVSTSTGHMVVNNVSDCSASSFFYIHGLTENMVHLRSGNQAGYDGGGYIADRNRIVGGMLLKFQRRKR--APNCRSSRG--YYEGCLSNEQEMADIVPDGEDWDQFRPTDSVVFNEDADGYTILIDTGGFNIGLNFGYCSVLLFEDLEFLGND-TRSVSVQLVTFNGNERTAYGFIFINFKFSDGGEVVVTDQVSTYILRSSLDSNRDRARWIAGLVFVLLAVGFLRHDLRRYYKNRRLKIKHHKFQCCCGCAFYVFILLNIFSWMIWAAIGEYVRFESEFQLSNIENKQSAQLDMLVDALVTQRELALFAASYKLLFLATTMVGLHRLLFQ 1698 QAAFRGYRLR+RLR LPARE E I LH+NA GFR +G+FL+F LYF LVF G D+AF+R+V+Q LR HV VK+GP+ D++H DV+SL D H W+Q + C+ + +EV L ++ + S ++ + ANF + L ELD+ P GGV S G++ V NV+ YDG GY DRNR +GGML+ F RR R + C SS YY+ CL++E + W FR ++ +V++ A GY +LI+TGGFNIGLNFGYC++L+ EDL+ + D RSV+VQLVT+NGN+ +A+G I I F F GGEV + V+ YIL + DR RWI GL+FV + + +RHD +++Y+ R K + +K CCCG F+ I+LN+ W+ WA++G+ + F+ Q ++ E + + + L ++ +E ALF+ S ++FL TT+ GL+R +FQ Sbjct: 71 QAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFTLVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLGDVHDWIQ-----------IALNCIGVFLEKCEEVLGLPSSNTTASSSTATSEAVAANFSA----------------------------------------------------------------------------LLEELDLEPSGGVRASGGYVTVENVN---------------------------YDGNGYAGDRNRAIGGMLVTFTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVYSGVASGYPVLIETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSE--EDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 331 bits (848), Expect = 2.730e-102 Identity = 180/268 (67.16%), Postives = 209/268 (77.99%), Query Frame = 1 Query: 1702 LTFHKRMSIVTDTLSRASTHLDHFLFVFVLVLLVFVDLTWLLIGKGSDEFDSLMDALRSMMRISLGESENFYPQMLEVQPEVGPVVITLFHVLVVVLLLNVVVAIILEAYRGVAAGMRDEDTIFQSLAAFVGMTLLSWRRRIRWAGSYLQWRISNRRTSSERPSLKMALQGSTGVIGVDGLPVVMVRRLDAPGTALAERQLSYNCPRYITVTQMQALIKATPAPSCVADRVVRRIVHKWVFHSDEKIASNGFTFWSQGGTAGGGSXXG 2505 LTFHKRMSIVTDTLSRASTHL+HFLFVF LV+L F LTWLL+G + EF +L DA RS++RISLGESENFYPQ+L+ QP VGPVV+ L+ VL VVLLLNVV+AI+LEAYRGVA+GM EDTIFQS AFVGM+ S RIRWA + ++WR+ RR +S RPSLK+ LQGSTGV GVDG PVVMVRR T L RQLS+NCPRYITVT+MQALI+ATP P+ VADR+VR+IVH WVF SDE+I F S G G G+ G Sbjct: 2 LTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS-RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILG-RQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGG 267
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: D7FTQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ5_ECTSI) HSP 1 Score: 202 bits (514), Expect = 1.470e-53 Identity = 125/315 (39.68%), Postives = 167/315 (53.02%), Query Frame = 1 Query: 1 QAAFRGYRLRKRLRMLPAREVESAIKALHSNAGGFRLLGMFLIFYALYFALVFTGFDIAFERAVEQGLRGHVNSVKFGPNGDRSHKDVSSLKDFHQWLQAFYLKTYTGTQLEDVCVPCSIRPPDEVCELCDFSSV-ETGSDSSGQFEGANFDSEPLTEECADCKASWVCGPVIAEACNITLSGGSLEGFNFTRINEEW--------------ESAYSDGGLLSTSSSYHLVSYEFLSDLVNM-TALAELDMSPEGGVSTSTGHMVVNNVSDCSASSFFYIHGLTENMVHLRSGNQAGYDGGGYIADRNRIVGGML 897 QAAFRGYRLR+RLR LPARE E I L++NA GFR +G+FL+F LYFALVF G D++F+R+V+Q LR HV VK+GP+ D++H DV+SL D HQW+QAF+LKTY GTQLE C PC+I+PPD+VC+ CDF+ + E ++ S N S+ A+W +A +F I+EE ++ GL ++++ N T L ELD+ P GGV S G++ V NV Y G GY+ DRNR +GGML Sbjct: 74 QAAFRGYRLRERLRRLPAREAEKHILGLYNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPLYEMFANDSDSSAADNVGSQGEPSPGDGVAAAWNGRRKVAXXXXXXXXXXXXXSTSFG-ISEECVQCLIALNCVGDLLQNCQEVLGLPYSNTTAXXXXXXXXXXXANFSTLLEELDLEPSGGVRASGGYVTVENVD---------------------------YSGNGYVGDRNRAIGGML 360
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: A0A6H5L8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A4_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.220e-51 Identity = 88/135 (65.19%), Postives = 109/135 (80.74%), Query Frame = 1 Query: 1 QAAFRGYRLRKRLRMLPAREVESAIKALHSNAGGFRLLGMFLIFYALYFALVFTGFDIAFERAVEQGLRGHVNSVKFGPNGDRSHKDVSSLKDFHQWLQAFYLKTYTGTQLEDVCVPCSIRPPDEVCELCDFSSV 405 QAAFRGYRLR+RLR LPARE E I LHSNA GFR +G+FL+F LYFALVF G D+AF+R+V+Q LR HV VK+GP+ D++H DV+SL D HQW+QAF+LKTY GTQLE C PC+I+PPD+VC+ CDF+ + Sbjct: 31 QAAFRGYRLRERLRRLPAREAEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAIKPPDDVCDACDFTPL 165
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 186 bits (471), Expect = 5.140e-51 Identity = 98/134 (73.13%), Postives = 112/134 (83.58%), Query Frame = 1 Query: 1702 LTFHKRMSIVTDTLSRASTHLDHFLFVFVLVLLVFVDLTWLLIGKGSDEFDSLMDALRSMMRISLGESENFYPQMLEVQPEVGPVVITLFHVLVVVLLLNVVVAIILEAYRGVAAGMRDEDTIFQSLAAFVGMT 2103 LTFHKRMSIVTDTLSRASTHLDHFLFVF LV+L F LTWLL+G + EF +L++A S+ RISLGESENFYPQ+L+ QP VGPV + L+ VL VVLLLNVV+AI LEAYRGV +GMR EDTIFQS AFVGM+ Sbjct: 2 LTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMS 135
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 152 bits (384), Expect = 5.760e-39 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1 Query: 1702 LTFHKRMSIVTDTLSRASTHLDHFLFVFVLVLLVFVDLTWLLIGKGSDEFDSLMDALRSMMRISLGESENFYPQMLEVQPEVGPVVITLFHVLVVVLLLNVVVAIILEAYRGVAAGMRDEDTIFQSLA 2085 LTFHKRMSIVTDTLSRASTHLDHFLFVF LV+L F LTWLL+G + EF +L DA +S+ RISLGESENFYPQ+L+ QP VGPVV+ L+ VL VVLLLNVV+AI+LE + +AA D T S A Sbjct: 33 LTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF--LAASAADGTTAGVSTA 158
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: A0A6H5KUB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUB6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.040e-31 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1 Query: 1 QAAFRGYRLRKRLRMLPAREVESAIKALHSNAGGFRLLGMFLIFYALYFALVFTGFDIAFERAVEQGLRGHVNSVKFGPNGDRSHKDVSSLKDFHQWLQ 297 QAAFRGYRLR+RLR LPARE E I LH+NA GFR +G+FL+F LYFALVF G D++F+R+V+Q LR HV VK+GP+ D++H DV+SL D HQW+Q Sbjct: 75 QAAFRGYRLRERLRRLPAREAEKHILGLHNNARGFRRVGLFLLFSGLYFALVFYGVDVSFQRSVQQALRDHVAGVKYGPDLDKTHHDVASLADVHQWVQ 173
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.010e-28 Identity = 85/199 (42.71%), Postives = 107/199 (53.77%), Query Frame = 1 Query: 2017 ILEAYRGVAAGMRDEDTIFQSLAAFVGMTLLSWRRR--------------------IRWAGSYLQWRISNRRTSS-----ERPSLKMALQGSTGVIGVDGLPVVMVRRLDAPGTALAERQLSYNCPRYITVTQMQALIKATPAPSCVADRVVRRIVHKWVFHSDEKIASNGFTFWSQGGTAGGGSXXG-GLLPMLRRRK 2535 +++AYRGV +GMR EDTI S AFVGM+ R IRWA +Y++WR++ RR + RPSL+M LQGSTGV GVDG PVVMVR L T L RQL ALI+A P P+ VA R+VR+IVH+WVF SDE+I S G G G+ G G + +L R+ Sbjct: 11 VVKAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILG-RQLP------------AALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRR 196
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 118 bits (296), Expect = 6.140e-24 Identity = 117/394 (29.70%), Postives = 188/394 (47.72%), Query Frame = 1 Query: 1066 YTILIDTGGFNIGLNFGYCSVL-LFEDLEFLGNDTRSVSVQLVTFNGNERTAYGFIFINFKFSDGGEVVVTDQVSTYILRSSLDSNRDRA-RWIAGLVFVLLAVGFLRHDLRRYYKNRR-------LKIKHHKFQCCCG------CAFYVFILLNIFSWMIWAAIGEYVRFESEFQLSNIENKQSAQLDMLVDALVTQRELALFAASYKLLFLATTMVGLHRLLFQKLTFHKRMSIVTDTLSRASTHLDHFLFVFVLVLLVFVDLTWLLIGKGSDEFDSLMDALRSMMRISLGESENFYPQMLEVQPEVGPVVITLFHVLVVVLLLNVVVAIILEAYRGVAA--GMRDEDTIFQSLAAFVGMTLLSWRRRIRWAGSYLQWRI-SNRRTSSERPS 2193 Y+I D G FN GLNF C +L + + + + RSVS++ T+NG + F+ I F+ GGEV + V + + S+ R IA F L+ V ++ D+ R ++ R + ++H C F L N+ W+ A +N + A + L ALV AA+ +A ++ GL RL F L FH R+S+VTD L+ ++ HL HF +F +V+ V+ +L W++ G S F + + +M RI+LGE +N YP M+E+ ++I + L +LLLN+V++I+L+A++ V + DT++Q++ +G WR R+ G L R S R SS R S Sbjct: 28 YSITTDIGVFNSGLNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVF----LWNLVLWVNVAVTAAKFELIPTLSYNNASEQVRAFSEEL--ALVALERWKRDAAA-----VAGSIFGLTRL-FIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGR----WRIRLTHVGFALVGRCPSVTRRSSPRGS 405
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.760e-21 Identity = 65/154 (42.21%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 1549 LSNIENKQSAQLDMLVDALVTQRELALFAASYKLLFLATTMVGLHRLLFQKLTFHKRMSIVTDTLSRASTHLDHFLFVFVL--------------------------VLLVFVDLTWLLIGKGSDEFDSLMDALRSMMRISLGESENFYPQMLE 1932 L + ++ + L L ++ +E LF+ S ++FL TT+ GL+ +FQ TFHKRMSIV DTLSRASTHL FLFVF L V+L F LT+LL+G + E +L DA RS++RIS GES+N YPQ+L+ Sbjct: 7 LQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQMFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILD 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1058.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1058.379.1 >prot_H-paniculata_contig1058.379.1 ID=prot_H-paniculata_contig1058.379.1|Name=mRNA_H-paniculata_contig1058.379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=833bp MLPAREVESAIKALHSNAGGFRLLGMFLIFYALYFALVFTGFDIAFERAVback to top mRNA from alignment at H-paniculata_contig1058:7111..25973- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1058.379.1 ID=mRNA_H-paniculata_contig1058.379.1|Name=mRNA_H-paniculata_contig1058.379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=18863bp|location=Sequence derived from alignment at H-paniculata_contig1058:7111..25973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1058:7111..25973- >mRNA_H-paniculata_contig1058.379.1 ID=mRNA_H-paniculata_contig1058.379.1|Name=mRNA_H-paniculata_contig1058.379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4998bp|location=Sequence derived from alignment at H-paniculata_contig1058:7111..25973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |