mRNA_H-paniculata_contig10576.376.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10576.376.1
Unique NamemRNA_H-paniculata_contig10576.376.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10576.376.1 vs. uniprot
Match: D7G5Q2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q2_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 7.830e-53
Identity = 124/194 (63.92%), Postives = 145/194 (74.74%), Query Frame = 3
Query:    3 VWLRTEEYLKDALGSVVTDVEDMAIHLMTFVSAQADAVEAVACDIAVARTRLLRSREQSAAARFLALRAAAEETPARQKIVVLSGEERPQKCRPLPPRKRVPLSEKLGDIYADEP-KPLSLGSPTT----SKLEGPGENGSVSEGTGTEMWGEHDSDVDTPKILSISDLPSPS-GGAGMGSPRA---DGSLPSP 557
            VWLRTEEYLKDALGSVV D+EDMAI+L+TFV+AQA+AVE V  D+ +A+TRL R+REQSAA R L LR AA ETPARQKIVVL+G ERP KCRPLPPR+R+ L EKLG IYADEP   LSL S +     S   G G+ GSV+E    +MWGEH+S   + ++  ISDLPSPS GG G GSPR+   DGS  SP
Sbjct:   54 VWLRTEEYLKDALGSVVADIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLELRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSGTLPGSAAAGLGDAGSVAETA--DMWGEHNSSPSSSRVGGISDLPSPSVGGDGGGSPRSFKPDGSSASP 245          
BLAST of mRNA_H-paniculata_contig10576.376.1 vs. uniprot
Match: A0A6H5JRA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 8.760e-53
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = 3
Query:    3 VWLRTEEYLKDALGSVVTDVEDMAIHLMTFVSAQADAVEAVACDIAVARTRLLRSREQSAAARFLALRAAAEETPARQKIVVLSGEERPQKCRPLPPRKRVPLSEKLGDIYADEP-KPLSLGSPTT----SKLEGPGENGSVSEGTGTEMWGEHDSDVDTPKILSISDLPSPSGGAGMGSPRA---DGSLPSP 557
            VWLRTEEYLKDALGSVVTD+E+MAI+L+TFV+AQA+AVE V  D+ +A+TRL R+RE SAA R L LR AA ETPARQKIVVL+G ERP KCRPLPPR+R+ L EKLG IYADEP   LSL S +     S   G G+ GSV+E    +MWGEH+S   + ++  ISDLPSPS G G GSPR+   DGS  SP
Sbjct:   54 VWLRTEEYLKDALGSVVTDIEEMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARELSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSATLPGSAAAGLGDTGSVAETA--DMWGEHNSSPSSSRVGGISDLPSPSVGGGGGSPRSFKPDGSSASP 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10576.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5Q2_ECTSI7.830e-5363.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA6_9PHAE8.760e-5363.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10576contigH-paniculata_contig10576:1308..8218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2986
Cds size1638
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10576.376.1prot_H-paniculata_contig10576.376.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10576 1376..6938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928760.4745176-UTR-H-paniculata_contig10576:1307..13751622928760.4745176-UTR-H-paniculata_contig10576:1307..1375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10576 1308..1375 +
1691480609.1606405-UTR-H-paniculata_contig10576:1307..13751691480609.1606405-UTR-H-paniculata_contig10576:1307..1375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10576 1308..1375 +
1622928760.5739691-UTR-H-paniculata_contig10576:6938..82181622928760.5739691-UTR-H-paniculata_contig10576:6938..8218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10576 6939..8218 +
1691480609.214786-UTR-H-paniculata_contig10576:6938..82181691480609.214786-UTR-H-paniculata_contig10576:6938..8218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10576 6939..8218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928760.4905682-CDS-H-paniculata_contig10576:1375..14111622928760.4905682-CDS-H-paniculata_contig10576:1375..1411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 1376..1411 +
1691480609.17194-CDS-H-paniculata_contig10576:1375..14111691480609.17194-CDS-H-paniculata_contig10576:1375..1411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 1376..1411 +
1622928760.503436-CDS-H-paniculata_contig10576:3121..44131622928760.503436-CDS-H-paniculata_contig10576:3121..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 3122..4413 +
1691480609.1855206-CDS-H-paniculata_contig10576:3121..44131691480609.1855206-CDS-H-paniculata_contig10576:3121..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 3122..4413 +
1622928760.538749-CDS-H-paniculata_contig10576:4605..48621622928760.538749-CDS-H-paniculata_contig10576:4605..4862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 4606..4862 +
1691480609.194583-CDS-H-paniculata_contig10576:4605..48621691480609.194583-CDS-H-paniculata_contig10576:4605..4862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 4606..4862 +
1622928760.5564167-CDS-H-paniculata_contig10576:6885..69381622928760.5564167-CDS-H-paniculata_contig10576:6885..6938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 6886..6938 +
1691480609.203072-CDS-H-paniculata_contig10576:6885..69381691480609.203072-CDS-H-paniculata_contig10576:6885..6938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10576 6886..6938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10576.376.1

>prot_H-paniculata_contig10576.376.1 ID=prot_H-paniculata_contig10576.376.1|Name=mRNA_H-paniculata_contig10576.376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=546bp
MAIHLMTFVSAQADAVEAVACDIAVARTRLLRSREQSAAARFLALRAAAE
ETPARQKIVVLSGEERPQKCRPLPPRKRVPLSEKLGDIYADEPKPLSLGS
PTTSKLEGPGENGSVSEGTGTEMWGEHDSDVDTPKILSISDLPSPSGGAG
MGSPRADGSLPSPSSKSFKSSGGGNSGKSREKKSRLEVAAAARAAALPIA
APALAPPPPARESIVTKKRLSIVSRTTTGGGGAPPPLVSRAKPGAPPPLL
SQTSRGGGAGGGGKAPPPPPPPTSGRPKNSSVGGAGAQPPPPPPPPARGH
SLSIGDGMAQPPAPPLPRPPLPPPPPTSSQSQAPAPTPPLPPPPPKQELS
TSRAAPTPPPPLPPPRGAPQLPSTAQVPLASQQRQPPPPPPVPQPSFSAQ
PPPPRLPQPAVSSQPPPPPPPPSAPSTSFQPPPPPPPPASQSRSSSPPPP
PPPPPVVPSTSSQPPPPPPPASQFRMSQPPPPPPPPTSSRLRSSPPPPPP
PPPPPPPSNPFMSSQPPPPPPPLPSASSARPPVPPPPPPPPPPPS*
back to top

mRNA from alignment at H-paniculata_contig10576:1308..8218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10576.376.1 ID=mRNA_H-paniculata_contig10576.376.1|Name=mRNA_H-paniculata_contig10576.376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6911bp|location=Sequence derived from alignment at H-paniculata_contig10576:1308..8218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGTGGCTGCGGACAGAAGAATACTTGAAGGATGCTCTTGGATCGGTG GTTACCGACGTGGAAGATATGGCAATCCATCTAATGACCTTCGTTAGTGC GCAGGTGATGGTACAATCTTAGCGTCACCACTGTAAATGCTCTCTACAAG CACCGAGGCTTGAGGGACGTGCCCCGTATTTCATGTCACTTTGCCTATGT AAGGCAGCAATTTCGGCTGTGTAATACCTTATACCCCTTGACCTGTCCGG GCACTTCGTTCGGCTGACCTTTACGTAATGCTGGAGCATGACCATTCGAT CTTCATTAAGTGGTGAAGCCGTTCAACCATGAATATATATATATATAGAC CACAAAAGATTATAACACGAATTACTCGCGGCGGCAGGCCAACTGATCAA GTGACGATTTCCTGCGTTCCTGAGGACACTTGAGCGTTCCTGTAGTTGAG TACACACCATAAGTGACCTTTCAGCCGGGACGATTGCTCTGTAGTTACGG GGCGGGGACCGGACTCGAGAACTATAGGTTGCCCCCATCCCTATGTTTGT TTCACGTAGTGTATTGATGATCACGATGGGTTCAATTGTTCAACTTTCAA CGTGTTCGTGTCGTAAACGTATTTTGAGTGAAAATGTGAGCAAAAAAATG TTGTGGTTGTGCTGTAGGTTAGCTCTTCAGGTGCCACGCGAAATTATTTC AACATGTAGAGTTGACAGTCCAGGACTGTTGGGGAGGGAAAGAAAGAGGG CGGGGGTTCTAACCGGGATTGGTGGAATTTGGAGAACGACCAGTAGAGTG TACGTGTATGAACCACGAACGGACCGTCTTGGCGATTAGTGTGTTCTTCT CGTTGTTCTTTTTCGTTGAACCGCAACAATGGTCGAGAGACAAGGGTTGC TTATGAACATGTTGACGTGAGCGGAAGTATCCTGATGAAAAGGCATGCAT GGGGTGATGGGTTCTATTCTGCTGCCTTGCAATGAGAACACGACACAGGC AGTCAGAGGATGATGGCTGACGGTGATACAGTGCCACCTCGCTCTCCCTC CATCTCTGTTTCTCTTTATCGGCTGTCTGTATTTTACACATTCAGACCCC TGGCTGTGCGAAACGATGACACCACGTGTGTAGTTCCTGTGTGCCGTAAG TAGTCAGTTGGGTTCATAGAGGCACGTAACGACCCCCGACATATATGCTA CTTCTAATCCTACGTGTTTAGGGTTGATTTTCACAATTTCATGGAAATTT GAGGAGCCCATGGGTTGAAAAAATAAGAAGGAAGTCTGCCAAAATACTAC CATCTTTTGCCCCTTTCGGTATTTTTCCGATGGCACAAAATGTGGAAATT GCAATAAAAACGTTTAAGACGGTCAAAATTAGCCCAACTTTGAGCGGTCA TTAATCTTGATGAGAATCAAATGTGAGATTCTAAATTCCGCAGCCTGTGA GGAATTTTCGGTCTGGAGAAATGATGATGTACCAAACTCAACCGACTGTA CTTGTGCGGCACAGAGGAAATAAATACCTGTCAACGGAGCTCCATTTCTC TATTGTCTGTATCAAGACTTAGTCGTGTAAACCCAGAAATAATTATTCCT TTCCATGTGTGTCGCGTGGTTTATCTTCGGTCCATTTGGAACTGGGGCGC CGAAGTGGTTGAGCGTGCGTGCTCATCTCCCAAAACGTGAAATACGATAG CGTCAAATTCCCACATGCAGTTGCCCCACCTACGCAACCCTGCCTTACCA CCCCTGGCCATCTAACTGCCTTCATCCCTCCCTCCCTCCCTAACCGCCCC CTCTCGCTGGACAGGCCGATGCGGTGGAGGCGGTGGCGTGCGATATCGCA GTGGCGAGGACCCGACTCTTGCGCTCGCGAGAGCAAAGCGCGGCCGCTCG ATTCTTAGCCCTGCGGGCCGCGGCCGAGGAGACGCCCGCGCGTCAAAAGA TCGTGGTGCTCTCAGGGGAGGAACGTCCTCAAAAATGCCGCCCCTTGCCC CCACGTAAGCGCGTTCCTCTCTCGGAGAAACTGGGAGACATCTACGCCGA CGAACCTAAGCCACTATCCTTGGGCTCACCGACGACCAGCAAGCTTGAAG GCCCAGGGGAAAACGGGAGCGTATCGGAAGGTACCGGGACGGAGATGTGG GGGGAGCATGACTCGGACGTCGACACGCCGAAGATCCTCTCCATTTCGGA TCTTCCCTCCCCCTCTGGAGGGGCCGGGATGGGGTCGCCGCGGGCTGATG GCTCGCTGCCGTCGCCGTCATCCAAGAGCTTTAAGAGCAGCGGCGGCGGG AATAGCGGGAAGTCGCGCGAGAAGAAGTCGCGGTTGGAAGTCGCGGCCGC GGCGCGTGCGGCGGCCTTGCCCATCGCCGCCCCGGCGCTGGCACCCCCGC CTCCGGCTCGGGAGTCAATTGTCACGAAGAAGCGGTTGTCGATAGTATCG CGGACAACTACCGGGGGTGGTGGCGCACCTCCACCCTTGGTGTCGAGGGC AAAGCCCGGAGCGCCGCCTCCATTACTGTCTCAGACGTCGCGTGGTGGGG GCGCCGGCGGTGGGGGCAAGGCTCCGCCGCCCCCGCCACCTCCCACATCT GGCCGACCAAAAAATTCGAGTGTAGGTGGGGCGGGTGCGCAGCCTCCTCC TCCTCCCCCGCCACCTGCCCGAGGGCATTCGCTTTCGATCGGAGACGGAA TGGCGCAACCGCCGGCTCCGCCGCTTCCCCGACCCCCTCTTCCACCTCCA CCGCCGACGTCTTCTCAGTCACAGGCTCCGGCACCTACCCCTCCTCTCCC CCCACCGCCGCCTAAGCAAGAGTTGTCGACCTCGCGGGCTGCACCTACGC CACCACCACCGCTCCCTCCGCCGAGGGGTGCTCCGCAGCTCCCTTCAACC GCCCAGGTCCCGCTAGCCTCCCAGCAACGACAGCCGCCGCCGCCGCCGCC GGTGCCCCAGCCTTCTTTTTCGGCTCAACCGCCGCCGCCGCGGCTGCCCC AGCCGGCTGTTTCGTCCCAACCGCCACCGCCACCGCCGCCGCCTTCTGCT CCGTCAACGTCCTTTCAGCCGCCGCCGCCTCCGCCGCCCCCAGCATCGCA GTCGAGGTCGTCGTCACCACCCCCCCCCCCCCCCCCCCCCCCCGTTTTTC CCCAACAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCATAC AGGTTTGCAACCCCCCCCCCCCCCCCCCCCCCCCCTCCTGCCCCCCCCAC GTCCCTCCGGCCCCCGCCGCCTCCCCCGCCCCCACCATCGCAGTCGAGGT CGTCGTCACCCCCCCCCCCCCCTCCCCCGCCACCTGTTGTTCCATCAACA TCATCCCAGCCGCCACCGCCGCCGCCCCCGGCATCGCAATTCAGGATGTC ACAGCCGCCGCCGCCTCCCCCGCCGCCGACATCATCGCGGCTCAGGTCGT CGCCACCACCACCACCTCCCCCGCCGCCGCCGCCGCCGCCTTCAAACCCA TTCATGTCGTCACAGCCGCCACCCCCTCCACCGCCGCTTCCGTCAGCATC TTCAGGTACAGTAGGCGCTTCGTTAGACCGTGGGCAACTTAGTTGTTGAC GTAGGCCGGAGCGAAGCCTAGGTGTGACTTGCGGTGATCATGGTGCTTTC GTTGTATCAAGTCTTGGTTTTGTACCGACCGCATGGTTATTTTTTAATGC AATGGGAGCTATTCTAGAGCTCGCCGTGTTCTCTGTCGCTGCTGTTGAGG TTGGTGATGGCGGGTCCTTCTGTTGTCGCTCCTATCGTTGGTTCATGTAC CTATCCCCTACCTTCATGATACCCCCCCCCCCCCCCCCCCCCCCCCCCTT CCCCCTTCATTTTTTTTTTTTTCCAATTTTTTGTCTTCGCTTCCAAACCA ACCAACGTATCTGATGACCTCTCAAAATCGTAAAAAAAGTGGACTTCGCT AGTGTTTTTTCTTTTTCTCATGTTGAGTTGACCTAATTCAATGTGGACGT GAATGCCTGGGGGAGCAAGCATTTGTTCATGCACAGCTCTTCTAAAAAGT TACCCCAATCTCTCGATAATGGGGTAGCTAGGCCCTAGGCTACGCTAGCG TTCTGGGAACTAGCATGCAATGACTTCAAGAGTTATTATTTGGGTGAATT TGTCCTCGATCTACCTCCAGTATGCCAAATCCCGCATTTTTGTTCTTCGG CCCACAGTTCTTTGCCGTTTACTTCCGATGAATTACTCAAAATGAGGGAC ATATTTCTTCCATATATCTCTTCAAAACTGTCCCCTGCCGTCCTGGGTGC AAACGCTTCCTTAACTTTACGGTGAAAAGAAAAGACAAGCGAGAAAACAA ACACCGATGATGACAACCATTGTGCATAACCATACACAGGCAAGGAAACT TTCGGAACACCAATCGCACTTTTTTGCCCCGGTTGAAGGGGAGCAATACT ATGCTTTTGCCCGAAACAATGATCTTGACACGAAATTGCACGTGATACCA AATCGTCAGTCAGTACACTTGAAACAATCTCTCCAATTTCGTAGACAAAT CGGGTATTGCGCAATAGGTATATCCCATAGGATGAAACCGCAATGAGCCC CCAGCGAAGGAGGCTACAGGTATTTCACACACACGTGGGGCACGTAGCTC AGCAAGTCTTGCCCGCTCCATCGCCAACGCTGTTGCACCTTAGTGTAAGC AATAGCTCCATAAATTTGGTCTGGTGCAGCCCACCGCATGGTTGCCACCT TCGCTTTCAGTAGTGGACGACAGACAAGTACTAGAGTAGACAGTGTAAAA TCATTTACAGTATATTTACTCTGAACAGTACAGATAGTTTAGATGGAGAA TTTCGAGGCACAGCGACGTAGAACTCCGCACAGTAGTAGAGAGCACCACT GAAAAGTGGAAAAACCTGTGGGTTGCTCTTTGAGTCGGCGACCGCGTGTG ATCTCAAGAACATAGCCTGATAAGTCGGACGGACGACACGTTATGTTTCG ATTTTGTCTCTTCGGGCCGCAGCCTGAGTCTGTGTGAATACGAGGTGGTT GAATTGGCTAAAATTGGTTCTATACTGGGCAAACAAAGACAAGAAGCGTG AGATTTTGTCGTAAATTTTCCAGTTGGACTAGGGTTTGACACTGTTTGGA CTGTCACCCTAGGAAGTCATGGTACGGCTGACGCATCACTTCCTTGTATG GGGGATAATGCAAGAATATCGAACAATGCTTCAGCCGTGGATTGCCATTT CATGCGTTTTCCAGAGTTCCAGGTCTGTAAAATCACTCACCGGTCGAAAT ATAAAGAATAACTCAAAATAATCTCTATCATGACTTGGTCTCAAATCGTC CAGTTTTATGTATGTATTTTTTATCCGGTCCCAAAGGATGGGTTTACGGT GTGTTGATTGATTTTCGATGCTGGAAAATCTGGTGTGTTCAACATGTCCT CCCAGTGGTACGCTGACTCGTAACAGATCACGTTGTTTTTATGAAACTAA TCGACCCCCCCGCCCTTCCCCCCCCTGCGCCCGGTTGCGCACCTATCCTA CTTGCTATCCATACTTCGATTGCTTCAGCACGCCCTCCGGTTCCGCCGCC ACCACCTCCTCCGCCCCCGCCGCCAAGCTAGTGAAGTGAAGTAGGGGTGG GCAGCGGGTAATCGTGAATCCTTCCGATAATGATCCGCTGGTGTTGCACG GTAGACGCTTGGCTGTTCTGAGGGTTGCGAGGCGCGGTGGCTTTGCGAGA GAACGGAGAGATCGAGAGAGGGAGAATTGTCGTTGCTTGCTGTACTTGTA GAGCTAATTATTCCTTGCGTCGTTCATGTTGGGTTTGTGTTTGCTCGTTT TCGGGGTTGGTGACTCTGGTGACTAACAGGTATGTAGGAGTAGAATTTTA GGGGAGATAAATCTGTCTGTGGGCGTGTTGTAAAGGTCCGCTCCACACCG CAGGGTTCGTGTATTTCGGATTCATCGACGCATACTGTTGATCGCATGTC ATGGATGATTATTCATTATTGCGGGCGAATTGGTGTACGTTCCAAGGTGA AGACGCTTACGATCTCGCCTAGTGTGATTTGCGCTTCAGTGAAGCCAAGG AATTGGAGATGCACTGTAGTACCAGGTTGTTTTAGAGATGTCGGGCAAAG GCAGGAATCGTTTCTGTTGGATAGACGGTTGGGATTTTGATTGGGTGGGT GGTGATTCATATTTTTATTGCCTTTTTGTGTTATCATCTTTTTCCTTCTT GTGGTTTTTCGTACAGTTTCTTTTTGCGTTGCTTACTTGCCGGATAATTA CGCGAACACTTGAAGTGCTCTATGAATAAGGAGTTATAGTTGTTCGTGTG TTGGGTGCAGGCTGGAAATGTGCGAGCACGTAGGATCAAGTGTCGACCCC ATGTTTATTCTTTGTTATGTTACTCGGAGCAGTCGTGACTTGTCCAGGCA TATAGAATGAACGTGCTCAGGTTGGACGTTCGGGCGAAAGCCTCTTGACT TTAGTCTCTTATCACTGGAAGTATGCACGTTCGTCCGGGGGGGTAGTGCG GTTCTATGTTGATCTAAAGCTTTGCCTCTCCCCCTTCCCTCCCATACTAG AAAAATCTGGTGTTGTGGAAGCAGTGGTTGTCATTGATGGGTTCATTCAG TTGGTAATAGTATTAAAAAATGAAGTAATATGTTAAGCAAAGGCATGGAT ACCTCCGAGAAAAATGATACGGAAAAATATGTCATGAGGTGATTAAGAAA ACAACGTGTAAAGTGGTTGGAGAATGAAAGGTATTGGAGAGTTGAGGTTG CTGCCTTATGAGGAGATGGATGATGGACAGAAACGTGAAAATGCTCCTTG AATTGATCTGTAATAATCTAGGACCAATGAGTCTTGGTCATAAAAAGCAA ATCTGCCAAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10576:1308..8218+

>mRNA_H-paniculata_contig10576.376.1 ID=mRNA_H-paniculata_contig10576.376.1|Name=mRNA_H-paniculata_contig10576.376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3276bp|location=Sequence derived from alignment at H-paniculata_contig10576:1308..8218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAATCCATCTAATGACCTTCGTTAGTGCGCAGATGGCAATCCATCT
AATGACCTTCGTTAGTGCGCAGGCCGATGCGGTGGAGGCGGTGGCGTGCG
ATATCGCAGTGGCGAGGACCCGACTCTTGCGCTCGCGAGAGCAAAGCGCG
GCCGCTCGATTCTTAGCCCTGCGGGCCGCGGCCGAGGAGACGCCCGCGCG
TCAAAAGATCGTGGTGCTCTCAGGGGAGGAACGTCCTCAAAAATGCCGCC
CCTTGCCCCCACGTAAGCGCGTTCCTCTCTCGGAGAAACTGGGAGACATC
TACGCCGACGAACCTAAGCCACTATCCTTGGGCTCACCGACGACCAGCAA
GCTTGAAGGCCCAGGGGAAAACGGGAGCGTATCGGAAGGTACCGGGACGG
AGATGTGGGGGGAGCATGACTCGGACGTCGACACGCCGAAGATCCTCTCC
ATTTCGGATCTTCCCTCCCCCTCTGGAGGGGCCGGGATGGGGTCGCCGCG
GGCTGATGGCTCGCTGCCGTCGCCGTCATCCAAGAGCTTTAAGAGCAGCG
GCGGCGGGAATAGCGGGAAGTCGCGCGAGAAGAAGTCGCGGTTGGAAGTC
GCGGCCGCGGCGCGTGCGGCGGCCTTGCCCATCGCCGCCCCGGCGCTGGC
ACCCCCGCCTCCGGCTCGGGAGTCAATTGTCACGAAGAAGCGGTTGTCGA
TAGTATCGCGGACAACTACCGGGGGTGGTGGCGCACCTCCACCCTTGGTG
TCGAGGGCAAAGCCCGGAGCGCCGCCTCCATTACTGTCTCAGACGTCGCG
TGGTGGGGGCGCCGGCGGTGGGGGCAAGGCTCCGCCGCCCCCGCCACCTC
CCACATCTGGCCGACCAAAAAATTCGAGTGTAGGTGGGGCGGGTGCGCAG
CCTCCTCCTCCTCCCCCGCCACCTGCCCGAGGGCATTCGCTTTCGATCGG
AGACGGAATGGCGCAACCGCCGGCTCCGCCGCTTCCCCGACCCCCTCTTC
CACCTCCACCGCCGACGTCTTCTCAGTCACAGGCTCCGGCACCTACCCCT
CCTCTCCCCCCACCGCCGCCTAAGCAAGAGTTGTCGACCTCGCGGGCTGC
ACCTACGCCACCACCACCGCTCCCTCCGCCGAGGGGTGCTCCGCAGCTCC
CTTCAACCGCCCAGGTCCCGCTAGCCTCCCAGCAACGACAGCCGCCGCCG
CCGCCGCCGGTGCCCCAGCCTTCTTTTTCGGCTCAACCGCCGCCGCCGCG
GCTGCCCCAGCCGGCTGTTTCGTCCCAACCGCCACCGCCACCGCCGCCGC
CTTCTGCTCCGTCAACGTCCTTTCAGCCGCCGCCGCCTCCGCCGCCCCCA
GCATCGCAGTCGAGGCCGATGCGGTGGAGGCGGTGGCGTGCGATATCGCA
GTGGCGAGGACCCGACTCTTGCGCTCGCGAGAGCAAAGCGCGGCCGCTCG
ATTCTTAGCCCTGCGGGCCGCGGCCGAGGAGACGCCCGCGCGTCAAAAGA
TCGTGGTGCTCTCAGGGGAGGAACGTCCTCAAAAATGCCGCCCCTTGCCC
CCACGTAAGCGCGTTCCTCTCTCGGAGAAACTGGGAGACATCTACGCCGA
CGAACCTAAGCCACTATCCTTGGGCTCACCGACGACCAGCAAGCTTGAAG
GCCCAGGGGAAAACGGGAGCGTATCGGAAGGTACCGGGACGGAGATGTGG
GGGGAGCATGACTCGGACGTCGACACGCCGAAGATCCTCTCCATTTCGGA
TCTTCCCTCCCCCTCTGGAGGGGCCGGGATGGGGTCGCCGCGGGCTGATG
GCTCGCTGCCGTCGCCGTCATCCAAGAGCTTTAAGAGCAGCGGCGGCGGG
AATAGCGGGAAGTCGCGCGAGAAGAAGTCGCGGTTGGAAGTCGCGGCCGC
GGCGCGTGCGGCGGCCTTGCCCATCGCCGCCCCGGCGCTGGCACCCCCGC
CTCCGGCTCGGGAGTCAATTGTCACGAAGAAGCGGTTGTCGATAGTATCG
CGGACAACTACCGGGGGTGGTGGCGCACCTCCACCCTTGGTGTCGAGGGC
AAAGCCCGGAGCGCCGCCTCCATTACTGTCTCAGACGTCGCGTGGTGGGG
GCGCCGGCGGTGGGGGCAAGGCTCCGCCGCCCCCGCCACCTCCCACATCT
GGCCGACCAAAAAATTCGAGTGTAGGTGGGGCGGGTGCGCAGCCTCCTCC
TCCTCCCCCGCCACCTGCCCGAGGGCATTCGCTTTCGATCGGAGACGGAA
TGGCGCAACCGCCGGCTCCGCCGCTTCCCCGACCCCCTCTTCCACCTCCA
CCGCCGACGTCTTCTCAGTCACAGGCTCCGGCACCTACCCCTCCTCTCCC
CCCACCGCCGCCTAAGCAAGAGTTGTCGACCTCGCGGGCTGCACCTACGC
CACCACCACCGCTCCCTCCGCCGAGGGGTGCTCCGCAGCTCCCTTCAACC
GCCCAGGTCCCGCTAGCCTCCCAGCAACGACAGCCGCCGCCGCCGCCGCC
GGTGCCCCAGCCTTCTTTTTCGGCTCAACCGCCGCCGCCGCGGCTGCCCC
AGCCGGCTGTTTCGTCCCAACCGCCACCGCCACCGCCGCCGCCTTCTGCT
CCGTCAACGTCCTTTCAGCCGCCGCCGCCTCCGCCGCCCCCAGCATCGCA
GTCGAGGTCGTCGTCACCCCCCCCCCCCCCTCCCCCGCCACCTGTTGTTC
CATCAACATCATCCCAGCCGCCACCGCCGCCGCCCCCGGCATCGCAATTC
AGGATGTCACAGCCGCCGCCGCCTCCCCCGCCGCCGACATCATCGCGGCT
CAGGTCGTCGCCACCACCACCACCTCCCCCGCCGCCGCCGCCGCCGCCTT
CAAACCCATTCATGTCGTCACAGCCGCCACCCCCTCCACCGCCGCTTCCG
TCAGCATCTTCAGGTCGTCGTCACCCCCCCCCCCCCCTCCCCCGCCACCT
GTTGTTCCATCAACATCATCCCAGCCGCCACCGCCGCCGCCCCCGGCATC
GCAATTCAGGATGTCACAGCCGCCGCCGCCTCCCCCGCCGCCGACATCAT
CGCGGCTCAGGTCGTCGCCACCACCACCACCTCCCCCGCCGCCGCCGCCG
CCGCCTTCAAACCCATTCATGTCGTCACAGCCGCCACCCCCTCCACCGCC
GCTTCCGTCAGCATCTTCAGCACGCCCTCCGGTTCCGCCGCCACCACCTC
CTCCGCCCCCGCCGCCAAGCTAGCACGCCCTCCGGTTCCGCCGCCACCAC
CTCCTCCGCCCCCGCCGCCAAGCTAG
back to top