mRNA_H-paniculata_contig1057.370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1057.370.1
Unique NamemRNA_H-paniculata_contig1057.370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 6.510e-122
Identity = 184/205 (89.76%), Postives = 194/205 (94.63%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKKSK 859
            ISRDSRHKRRETGG+RSKYRKKRKFEMGRPAA TKLGHKRVHPVRCRGGNMKYRALRLD+GNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVV+DAHPFKHWYE+HYG+ IG+KKGKKA P E+ E VAKSDHV+RKLAKRQ  R L  LLD+QVASGRFLACISSRPGQSGRCDGY+LEGKELEFYQKMLAKKKSK
Sbjct:    3 ISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEE-EAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.650e-102
Identity = 161/209 (77.03%), Postives = 180/209 (86.12%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDT----EEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKKSK 859
            ISRDSRHKRRETGGKR + RKKRKFE+GRPAA TK+G  R+  VRCRGGN+K+RALRL+TGN+SWGTEVCTRKTRILDVVYNASNNELVRTKTLVK A+V IDA PF+ WYE+HYG+AIGVKKGK+A   +      EE  KSDHVQRKLA RQ TR LD LLD+Q ASGR LACISSRPGQSGRCDGY+LEGKELEFYQK+L++KK K
Sbjct:    3 ISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.560e-101
Identity = 159/210 (75.71%), Postives = 176/210 (83.81%), Query Frame = 2 
Query:  230 LYSLRISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKE--DTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKK 853
            L  + ISRDSRHKRR TGGKR+K+RKKRKFEMGRPAA TKLG KRVHPVRC GGNMKYRA+RL+ G +SWGTE  +RK RILDVVYNASNNELVRTKTLVKNA+V+IDAHPFK WYE+HYG+ IG KKGK+ P K+  D E+  KS HVQRK+AKRQ  R L   LDDQ   GR LACISSRPGQSGR DGY+LEGKELEFYQKMLA+KK
Sbjct:   18 LSEMGISRDSRHKRRHTGGKRAKFRKKRKFEMGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A6U3PIT0_9STRA (40S ribosomal protein S8 n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3PIT0_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.860e-97
Identity = 155/202 (76.73%), Postives = 172/202 (85.15%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKK 850
            I+R+ RHKRRETGG+R KYRKKRKFEMGRPAAMTK+G KRVH VR RGGNMK+RALRLD+GNFSWGTEVCTRK R+LDV YNASNNELVRTKTLVK AIV+IDAHPFK WYESHYGL IGVKKG  A      ++V KSDHVQRKLA RQ  R+L+  +D+Q+ASGR LA I+SRPGQSGRCDG VLEG EL FYQKM+ KK
Sbjct:    3 ITREGRHKRRETGGRREKYRKKRKFEMGRPAAMTKIGEKRVHGVRGRGGNMKWRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKSWYESHYGLKIGVKKGSTALD----DDVKKSDHVQRKLASRQKGRELEQAIDNQMASGRLLAKITSRPGQSGRCDGIVLEGAELHFYQKMMHKK 200
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A7S2JRG2_9STRA (40S ribosomal protein S8 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRG2_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.180e-96
Identity = 154/202 (76.24%), Postives = 171/202 (84.65%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKK 850
            I+R  R+KRRETGG+R+K+RKKRKFEMGRPAAMTK+G KRV  VRCRGGNMKYRALRLDTGNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV++D HPFK WYESHYG+  G++ G K P  ED  E  KS+HVQRKLA RQ TR L+P LD Q+ASGRFLA I+SRPGQSGRCDG +LEG EL FYQKM+ KK
Sbjct:    3 ITRTGRNKRRETGGRRAKFRKKRKFEMGRPAAMTKIGEKRVREVRCRGGNMKYRALRLDTGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLVDCHPFKTWYESHYGVKTGLR-GAKPPVDED--EAKKSNHVQRKLAARQKTRSLEPTLDSQLASGRFLAKITSRPGQSGRCDGVILEGPELAFYQKMMHKK 201
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: H3G699_PHYRM (40S ribosomal protein S8 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G699_PHYRM)

HSP 1 Score: 299 bits (766), Expect = 3.580e-96
Identity = 155/205 (75.61%), Postives = 174/205 (84.88%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKKSK 859
            ISRDSRHKRRETGGKR ++RKKRKFE+GR  A TKLG KRVH VR RGG++K+RAL L+TGNFSWGTEVC RKTRILDVVYNASNNELVRTKTLVK A+V+IDA PF+ WYE+HYG+ IGVKK  +   K++ EEV KSDHV RKLA RQ TR LDP +D+QV SGR LA ISSRPGQSGR DGY+LEGKELEFYQ+ LA KKSK
Sbjct:    2 ISRDSRHKRRETGGKRKQFRKKRKFELGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLIDATPFRQWYEAHYGVKIGVKKNAE---KQEEEEVKKSDHVLRKLAARQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 203
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 299 bits (765), Expect = 4.890e-96
Identity = 153/202 (75.74%), Postives = 169/202 (83.66%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKK 850
            ISR+ RHKRRETGG+R KYRKKRKFE+GRPAAMTK+G KRVH VRCRGGN+K+RALRLD+GNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV+IDAHPFK WYE+HYG+ IGVKKG+KA    D E   KS+ VQRKLA RQ  R L+  LD Q ASGR LA I+SRPGQ GRCDG VLEG EL FYQ+ +AKK
Sbjct:    3 ISREGRHKRRETGGRREKYRKKRKFELGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAHA--DEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: M4BLW0_HYAAE (40S ribosomal protein S8 n=5 Tax=Peronosporaceae TaxID=4777 RepID=M4BLW0_HYAAE)

HSP 1 Score: 299 bits (766), Expect = 1.360e-95
Identity = 154/205 (75.12%), Postives = 173/205 (84.39%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKKSK 859
            ISRDSRHKRRETGGKR ++RKKRKFE+GR  A TKLG KRVH VR RGG++K+RAL L+TGNFSWGTEVC RKTRILDVVYNASNNELVRTKTLVK A+V++DA PF+ WYE+HYG+ IG+KK   A   E+ EEV KS HV RKLAKRQ TR+LD  +DDQV SGR LA ISSRPGQSGR DGY+LEGKELEFYQ+ LA KKSK
Sbjct:   39 ISRDSRHKRRETGGKRKQFRKKRKFEIGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGIKKN--AEKIEEEEEVKKSSHVMRKLAKRQRTRELDSKIDDQVTSGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKKSK 241
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: D0MUS0_PHYIT (40S ribosomal protein S8 n=15 Tax=Phytophthora TaxID=4783 RepID=D0MUS0_PHYIT)

HSP 1 Score: 298 bits (763), Expect = 1.430e-95
Identity = 152/205 (74.15%), Postives = 173/205 (84.39%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKKAPPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKKSK 859
            ISRDSRHKRRETGGKR ++RKKRKFE+GR  A TKLG KRVH VR RGG++K+RAL L+TGNFSWGTEVC RKTRILDVVYNASNNELVRTKTLVK A+V++DA PF+ WY++HYG+ IG+KK     P++  EEV KSDHV RKLA RQ TR LDP +D+QV SGR LA ISSRPGQSGR DGY+LEGKELEFYQ+ LA KKSK
Sbjct:   11 ISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYDAHYGVKIGIKKN---TPQQQEEEVKKSDHVLRKLANRQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 212
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BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 297 bits (760), Expect = 3.390e-95
Identity = 149/204 (73.04%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:  245 ISRDSRHKRRETGGKRSKYRKKRKFEMGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKK-APPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRPGQSGRCDGYVLEGKELEFYQKMLAKKK 853
            ISRDSRHKRR TGG+++  +KKR++E+GRP A TKLG  R+H VRCRGGN+K+RA+RLDTGNFSWG+EVCTRKTR+LDVVYNASNNELVRTKTLVKN+I+ +DA PF+ WYE HYG+ +GVKK KK A   EDTE+  KS  +QRKLA+RQ TR LDP LDD  +SGR LACISSRPGQSGRCDGY+LEGKEL+FY KML KKK
Sbjct:    3 ISRDSRHKRRATGGRKANLKKKRQYELGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAKKTAAEGEDTEK--KSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKK 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1057.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI6.510e-12289.7640S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CLT8_9STRA1.650e-10277.0340S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A7S2USH6_9STRA2.560e-10175.7140S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A6U3PIT0_9STRA2.860e-9776.7340S ribosomal protein S8 n=3 Tax=Lithodesmiaceae T... [more]
A0A7S2JRG2_9STRA1.180e-9676.2440S ribosomal protein S8 n=1 Tax=Leptocylindrus da... [more]
H3G699_PHYRM3.580e-9675.6140S ribosomal protein S8 n=2 Tax=Phytophthora TaxI... [more]
A0A7S1Z304_TRICV4.890e-9675.7440S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
M4BLW0_HYAAE1.360e-9575.1240S ribosomal protein S8 n=5 Tax=Peronosporaceae T... [more]
D0MUS0_PHYIT1.430e-9574.1540S ribosomal protein S8 n=15 Tax=Phytophthora Tax... [more]
A0A812SFI7_SYMMI3.390e-9573.0440S ribosomal protein S8 n=1 Tax=Symbiodinium micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1057contigH-paniculata_contig1057:9946..13473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue7.9e-86
Seed eggNOG ortholog2880.D7FHG3
Preferred nameRPS8
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2007@1,KOG3283@2759
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-25_002510.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons6
Model size1594
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1057.370.1prot_H-paniculata_contig1057.370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1057 11294..12741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.284972-UTR-H-paniculata_contig1057:9945..101871622928759.284972-UTR-H-paniculata_contig1057:9945..10187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 9946..10187 +
1691480608.6417718-UTR-H-paniculata_contig1057:9945..101871691480608.6417718-UTR-H-paniculata_contig1057:9945..10187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 9946..10187 +
1622928759.3075442-UTR-H-paniculata_contig1057:11213..112931622928759.3075442-UTR-H-paniculata_contig1057:11213..11293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 11214..11293 +
1691480608.6546333-UTR-H-paniculata_contig1057:11213..112931691480608.6546333-UTR-H-paniculata_contig1057:11213..11293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 11214..11293 +
1622928759.4163-UTR-H-paniculata_contig1057:12741..134731622928759.4163-UTR-H-paniculata_contig1057:12741..13473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 12742..13473 +
1691480608.714025-UTR-H-paniculata_contig1057:12741..134731691480608.714025-UTR-H-paniculata_contig1057:12741..13473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1057 12742..13473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.3381894-CDS-H-paniculata_contig1057:11293..114201622928759.3381894-CDS-H-paniculata_contig1057:11293..11420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11294..11420 +
1691480608.6642396-CDS-H-paniculata_contig1057:11293..114201691480608.6642396-CDS-H-paniculata_contig1057:11293..11420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11294..11420 +
1622928759.3551877-CDS-H-paniculata_contig1057:11759..118571622928759.3551877-CDS-H-paniculata_contig1057:11759..11857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11760..11857 +
1691480608.6731296-CDS-H-paniculata_contig1057:11759..118571691480608.6731296-CDS-H-paniculata_contig1057:11759..11857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11760..11857 +
1622928759.372237-CDS-H-paniculata_contig1057:11996..120951622928759.372237-CDS-H-paniculata_contig1057:11996..12095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11997..12095 +
1691480608.682633-CDS-H-paniculata_contig1057:11996..120951691480608.682633-CDS-H-paniculata_contig1057:11996..12095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 11997..12095 +
1622928759.3884413-CDS-H-paniculata_contig1057:12348..124801622928759.3884413-CDS-H-paniculata_contig1057:12348..12480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 12349..12480 +
1691480608.6915383-CDS-H-paniculata_contig1057:12348..124801691480608.6915383-CDS-H-paniculata_contig1057:12348..12480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 12349..12480 +
1622928759.402893-CDS-H-paniculata_contig1057:12657..127411622928759.402893-CDS-H-paniculata_contig1057:12657..12741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 12658..12741 +
1691480608.7025013-CDS-H-paniculata_contig1057:12657..127411691480608.7025013-CDS-H-paniculata_contig1057:12657..12741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1057 12658..12741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1057.370.1

>prot_H-paniculata_contig1057.370.1 ID=prot_H-paniculata_contig1057.370.1|Name=mRNA_H-paniculata_contig1057.370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MGRPAAMTKLGHKRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRI
LDVVYNASNNELVRTKTLVKNAIVVIDAHPFKHWYESHYGLAIGVKKGKK
APPKEDTEEVAKSDHVQRKLAKRQATRKLDPLLDDQVASGRFLACISSRP
GQSGRCDGYVLEGKELEFYQKMLAKKKSK*
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mRNA from alignment at H-paniculata_contig1057:9946..13473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1057.370.1 ID=mRNA_H-paniculata_contig1057.370.1|Name=mRNA_H-paniculata_contig1057.370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig1057:9946..13473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATGGAAATGTTTACGCACAAGCTCCCTTGCTATTGTACTGGATATCAA
GGCACAGAGTGAGGGGATCAAAACAGGAGGGTTTGTGGATGGAGTGGGCG
CCCAGCGGTGTGACGAGGACAGCGTTTAGGCACCTGTGTTTCTCCCTTGT
GTTTGTTTTTACTAGGCTGGGCGACTTGTTTATTGCGAGGCGATGATAGC
TGAAGCCAAAGCGTAAGCCCGGAACCCAGCTGTATTCCCTGCGTGTGTGA
CTGTTGGTGGTGTTTAGTTGTTGGCGACCGCTAGGCTGTCCGCCTGCATC
CGCCTGGGTATTAGGTTGTATACTCTTTGTAGAGTATTGACTGTTGTACG
GGTATTTTGAAGTATCTACCAAACAGAGCAGCCATGTACCATGGGGCCAG
AGGTGACACGACTTCAAGCGGTATACTTCGGCCATGCAGGCTTCGTCGAA
GTATTGATTACCCTGCGCAATCTGGGTATCCGTGCCTAGAGCGGGTGGAA
TTCCACTGTCTTCTATTGACTCCTTCCGTTGGAAGAAAGTGCTACCTTGA
CCGAAAGTACTCTTGATGGCCTCAGGGTGCCGCATAGCCTCTAGGTCTGT
CTTGAAATCTCAAAGACACCGCCAAGAAGGTTGGTGAATTGTCCAGTAAG
GAGTAATGATCTGTCGTCTTGTGCTACAGACGGTTTGTTGTTCGAGGAGT
TACCCAAGATGTCCATTCCATTGTACAAATTATCACCGTAACACGAGTAG
CAGTTACTGTGTTGATACCAACTGCACTTCGCACTGCCCGAGATTCTCGC
CATGTAGTACCATCATGAGTTGTCATGCTCCTTTCGAATGGAAAATATGA
TCCACGGGCATTTCTGTCCCTTATCCTCTTTTTGAGTCCGTGCCACGACT
CGTGAAGTTAGCTTTGCACCATATTTTGGGCAAGGTCAAACGAGTCCGTC
AGGTTTACACGGACATTCAAGTATCATGTGTAGGCCGTACGAGGACCTGG
GAGGCCAAGAGAAGGAACTTTCACTGCTACCTGGCAGTGGCGGGCTTAGT
CGAGATTTTCACATTGTTTAGGCTTTTCACGCGTACTCGGAAACGACCGC
CGATGAAATCATGATACACGTCACAAAACACGCGTGCGTCTCAACAATGT
TCCCTGTGAAGAGATTACTAATAGATGTTGGTATGTCTGGTTCGGAACTT
GTTCATTTGAGTGAAATTGGGTTTTTCCCATTCCTATTACCATTGGTTTA
TCACATTGTGTCATGCAGGTATCTCTAGGGATTCGCGTCACAAGCGTCGT
GAAACGGGCGGTAAGCGCTCCAAGTACAGGAAGAAGAGGAAGTTCGAGAT
GGGGCGCCCTGCGGCGATGACCAAGCTTGGTCACAAGCGTGTGCACCCTG
TGCGGTGCAGGGGCGGCAACATGAAGTACCGCGCGCTCAGACTCGACACG
GGCAACTTCAGCTGGGGTACCGAGGGTGAGTAATTCCTTTAGTCGAAAGT
TGTGTGGGGTTGCAGTAAGTGTAACGAATGAGGAGTGAGAGAATTTGTTG
TGTATAACTCTAATATCCGGCAGTGTTTCTGGTGCGGTTATGAATGGAAA
TGTAAACCTTCGAAGAGAAGATCTCATACTAATATGAGATCGAATTCGAG
CACCGTCTGGATTATCCTCGTTTGCAATGTCGTGGTCACCGCCGCCTTGG
AATGTAGATGAAATATCAGTACAGCATGTTTCATGTGCAGTCAAACAGCT
CTAGAAGTGAGCTTGTCCCAACCTTTCCCCCCATATGAATCTGTGCTGTA
CACGTTTGTCACAGTTTGCACTCGCAAGACCCGTATCTTGGACGTCGTGT
ATAACGCAAGTAACAACGAGCTGGTCCGCACCAAGACCCTTGTGAAAAAC
GCTATTGTCGTGGTGAGTGCGGGCGTCAAGTCATGTGGGTTCGTTTAAAG
TCATCGTGAGGTATGGCCCTTTCCCCGCAGGGAAAGAAATGACACTTGTT
TCGAAGGGTAAAATATTTTCTCATTGGAAATTGTGTTTCCTGTTACGACA
GATTGACGCTCACCCTTTCAAGCACTGGTACGAGAGCCACTACGGCCTCG
CGATCGGGGTGAAAAAGGGCAAGAAGGCACCCCCCAAGGAAGACACGGAG
GTGAGAAGCTCACTTGACTAACATTATAATATGGGTCCGTTACATGAGCG
TCCGTGATAAATACTTGAATGAGTTCGGATAGCGAACGGTGACAATGGTG
TTCGAAACGATGTATCTTTTGTTTCAAAAGCCGTGCTTCTGATGCCGAAG
TTGGTGGGAAAATGTGTGTATTCACTTGTAGAGGGCTGAGATACCCCGAG
ATGAGCTCAAAACCGTAAAAACGCCTGGGTACCGTCCATTTTGCATGTTG
CAGGAGGTGGCTAAGTCTGACCACGTACAGCGAAAGCTGGCGAAACGCCA
AGCGACCCGGAAGTTGGACCCTCTCCTCGATGATCAGGTGGCATCTGGTC
GATTCCTGGCCTGCATCTCTTCTCGCCCTGGACAGGTGTGACGTCGTTTC
GAGATCAGATGACGTATGGGGTTGTAGTGAACTTTAAATGAGACTTTAGT
GGTGTCCCTTGATGGAATTTCACGGTCTTCCGAAATCGATGAAAAATGTT
TGGTAGGTAACTCGACTGATTGACCCTGATTTATACGTTTGCATTTCTTC
TTTTTTTTACAGTCCGGCCGCTGCGACGGTTACGTGCTTGAGGGCAAAGA
GCTGGAGTTTTACCAGAAGATGTTGGCCAAGAAGAAGTCGAAGTAAACGC
CAAAACACATCCAAGTTGAACCAGTGGCCTGAGAGGAGCTTGAGTCGACT
ACGCACTTCCTTCTAGCTGGATGTTTCCATGGCGACGCTAGTCCACGAGA
CACGAAAGGAGTTTCGAGTATGCCCTCATGGAAAAGTGGAACGAAGGTTT
CCTCGGAACTTGATGTCTTTTAAATGCCAGATGGATGTGCTGTGTGGACG
GTTTGTTGAGGATCGGGTGGTCGGGTGATGGTTAGGTGTTTTTCGGGGTT
AGCAACAACGTGGAGTTGTTGTGTTGATGGGTACGGCAGAACAAAGCAAC
TAATAAAATGACGAAAAGAAGGAAACGGTATTGATGAGACAGGTTGCGTT
TCCAATATGTTGAGATTGACAACAAAACGGCCACATGTACCCGAGTCTTT
CTCATTATTCAAATGGGATTTGAAAAAAACGTGAAAAACAGCAAGATTCA
ATATATCATTCCTTGCGTGATCGAGGAGCCATTCATTTGAAACTAATCTA
ATCCCTGAAAAATCAAGTGATTGTGGTTCAGTGTTTTTTTTTCGTTTTGA
CGTAGTATATATCGTGACCAAAAATACGTTGTCATGCTCGATATTGGTGA
AAGGACGTGAAAAGAAAAAGTAGATGATGTGTAATACCATTTCACGTCAA
TAATTGGTCTTGTATACCATGAAGTACCATGATTCCTTTAAATGTCATCT
TATGGCTATATAATATGAATCGAACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1057:9946..13473+

>mRNA_H-paniculata_contig1057.370.1 ID=mRNA_H-paniculata_contig1057.370.1|Name=mRNA_H-paniculata_contig1057.370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig1057:9946..13473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCGCCCTGCGGCGATGACCAAGCTTGGTCACAAGCGTGTGCACCC
TGTGCGGTGCAGGGGCGGCAACATGAAGTACCGCGCGCTCAGACTCGACA
CGGGCAACTTCAGCTGGGGTACCGAGGATGGGGCGCCCTGCGGCGATGAC
CAAGCTTGGTCACAAGCGTGTGCACCCTGTGCGGTGCAGGGGCGGCAACA
TGAAGTACCGCGCGCTCAGACTCGACACGGGCAACTTCAGCTGGGGTACC
GAGGTTTGCACTCGCAAGACCCGTATCTTGGACGTCGTGTATAACGCAAG
TAACAACGAGCTGGTCCGCACCAAGACCCTTGTGAAAAACGCTATTGTCG
TGTTTGCACTCGCAAGACCCGTATCTTGGACGTCGTGTATAACGCAAGTA
ACAACGAGCTGGTCCGCACCAAGACCCTTGTGAAAAACGCTATTGTCGTG
ATTGACGCTCACCCTTTCAAGCACTGGTACGAGAGCCACTACGGCCTCGC
GATCGGGGTGAAAAAGGGCAAGAAGGCACCCCCCAAGGAAGACACGGAGA
TTGACGCTCACCCTTTCAAGCACTGGTACGAGAGCCACTACGGCCTCGCG
ATCGGGGTGAAAAAGGGCAAGAAGGCACCCCCCAAGGAAGACACGGAGGA
GGTGGCTAAGTCTGACCACGTACAGCGAAAGCTGGCGAAACGCCAAGCGA
CCCGGAAGTTGGACCCTCTCCTCGATGATCAGGTGGCATCTGGTCGATTC
CTGGCCTGCATCTCTTCTCGCCCTGGACAGGAGGTGGCTAAGTCTGACCA
CGTACAGCGAAAGCTGGCGAAACGCCAAGCGACCCGGAAGTTGGACCCTC
TCCTCGATGATCAGGTGGCATCTGGTCGATTCCTGGCCTGCATCTCTTCT
CGCCCTGGACAGTCCGGCCGCTGCGACGGTTACGTGCTTGAGGGCAAAGA
GCTGGAGTTTTACCAGAAGATGTTGGCCAAGAAGAAGTCGAAGTAATCCG
GCCGCTGCGACGGTTACGTGCTTGAGGGCAAAGAGCTGGAGTTTTACCAG
AAGATGTTGGCCAAGAAGAAGTCGAAGTAA
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