mRNA_H-paniculata_contig10565.369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10565.369.1
Unique NamemRNA_H-paniculata_contig10565.369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10565.369.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.330e-20
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 2 
Query:    8 TNERDAVALVCFKMPDEIGTLVIRAEEMSAQEVWVRALAARLLSKDHHARMAELYGGGADD 190
            TNERDAVALV F+ P E GTLVIRAE + AQ VWVRALAARL S++HHARMAELYGGGA D
Sbjct: 4789 TNERDAVALVVFRNPTETGTLVIRAESVEAQHVWVRALAARLTSREHHARMAELYGGGAGD 4849
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10565.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYV2_ECTSI1.330e-2078.69PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10565contigH-paniculata_contig10565:8236..8696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size461
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10565.369.1prot_H-paniculata_contig10565.369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10565 8282..8428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.1763732-UTR-H-paniculata_contig10565:8235..82811622928759.1763732-UTR-H-paniculata_contig10565:8235..8281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10565 8236..8281 +
1691480608.6143534-UTR-H-paniculata_contig10565:8235..82811691480608.6143534-UTR-H-paniculata_contig10565:8235..8281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10565 8236..8281 +
1622928759.2152445-UTR-H-paniculata_contig10565:8428..86961622928759.2152445-UTR-H-paniculata_contig10565:8428..8696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10565 8429..8696 +
1691480608.6324542-UTR-H-paniculata_contig10565:8428..86961691480608.6324542-UTR-H-paniculata_contig10565:8428..8696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10565 8429..8696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928759.1942046-CDS-H-paniculata_contig10565:8281..84281622928759.1942046-CDS-H-paniculata_contig10565:8281..8428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10565 8282..8428 +
1691480608.6238565-CDS-H-paniculata_contig10565:8281..84281691480608.6238565-CDS-H-paniculata_contig10565:8281..8428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10565 8282..8428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10565.369.1

>prot_H-paniculata_contig10565.369.1 ID=prot_H-paniculata_contig10565.369.1|Name=mRNA_H-paniculata_contig10565.369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MPDEIGTLVIRAEEMSAQEVWVRALAARLLSKDHHARMAELYGGGADD*
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mRNA from alignment at H-paniculata_contig10565:8236..8696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10565.369.1 ID=mRNA_H-paniculata_contig10565.369.1|Name=mRNA_H-paniculata_contig10565.369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at H-paniculata_contig10565:8236..8696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGCTACGAACGAGAGGGACGCTGTTGCTCTTGTGTGCTTCAAAATGC
CCGATGAGATAGGGACGCTTGTCATTCGCGCTGAGGAGATGTCGGCACAG
GAGGTCTGGGTACGTGCGCTTGCCGCCCGGCTTCTGAGCAAGGACCACCA
CGCTCGCATGGCCGAGTTATATGGGGGTGGAGCGGACGATTGAAAATTGG
TTGCGGTAGAAGGCACGGGGCCGGGGGGGGGAGAGATGGTTTTGTCGTGT
TGAGAGAAAAAAAAAGGTGTGGAACTTGTTGAGGGCGTGTATGGAGTGCC
TGCCTGGAAGTTATACAAGCTAGGAGGCTGGGATGTCGGGTAAGGGAGAC
ATTAGATTGTGCGGGTGCATGTGAGGTGATGTTGAGTGCGGATGCCTACG
AGGCAGAGAGTAGACAGGCAGAGAAGTAGCAGGCGGTAGTCGGGTGTAAA
CAAACCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10565:8236..8696+

>mRNA_H-paniculata_contig10565.369.1 ID=mRNA_H-paniculata_contig10565.369.1|Name=mRNA_H-paniculata_contig10565.369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig10565:8236..8696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGATGAGATAGGGACGCTTGTCATTCGCGCTGAGGAGATGTCGGC
ACAGGAGGTCTGGGTACGTGCGCTTGCCGCCCGGCTTCTGAGCAAGGACC
ACCACGCTCGCATGGCCGAGTTATATGGGGGTGGAGCGGACGATTGAATG
CCCGATGAGATAGGGACGCTTGTCATTCGCGCTGAGGAGATGTCGGCACA
GGAGGTCTGGGTACGTGCGCTTGCCGCCCGGCTTCTGAGCAAGGACCACC
ACGCTCGCATGGCCGAGTTATATGGGGGTGGAGCGGACGATTGA
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