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Homology
BLAST of mRNA_H-paniculata_contig10529.345.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI) HSP 1 Score: 168 bits (426), Expect = 2.270e-45 Identity = 83/119 (69.75%), Postives = 102/119 (85.71%), Query Frame = 1
Query: 343 HRQYSLALSAVEGAGWSGTWLFRVTYDAESDEVWFQTSLAQRRGPFETTLGSNQAGRVKRVNEDMLERGDKHAKVLRIRKEQYSRISSLSRSRAISKKELERDRILHPEKYKRVHRYMR 699
HRQY+LALSAVEGAGWSGTW+FRVT DAE++EVWF+T L+QR+G F TT G +Q RV RVN+DML R ++H+ VLR R+EQ++R+SSL+RSRA K+L RDRILHP+KYKRVHRYMR
Sbjct: 429 HRQYTLALSAVEGAGWSGTWVFRVTLDAETEEVWFETKLSQRKGSFGTTAGGDQLVRVTRVNQDMLARANRHSAVLRAREEQFTRVSSLARSRAKDAKDLARDRILHPDKYKRVHRYMR 547
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 699 |
Cds size | 699 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10529.345.1 >prot_H-paniculata_contig10529.345.1 ID=prot_H-paniculata_contig10529.345.1|Name=mRNA_H-paniculata_contig10529.345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
GSTLGLLNRLPMGTWSLSPMRVALLRETTSPAGHAAGTTRGRNNNYTTIA AAAKRGKGSERVERGSRVSRRRGHGGERGGKKGSGRRKMHRSRREDEKQG EEEAGNEGEDEKLMHRQYSLALSAVEGAGWSGTWLFRVTYDAESDEVWFQ TSLAQRRGPFETTLGSNQAGRVKRVNEDMLERGDKHAKVLRIRKEQYSRI SSLSRSRAISKKELERDRILHPEKYKRVHRYMR back to topmRNA from alignment at H-paniculata_contig10529:490..8683- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10529.345.1 ID=mRNA_H-paniculata_contig10529.345.1|Name=mRNA_H-paniculata_contig10529.345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8194bp|location=Sequence derived from alignment at H-paniculata_contig10529:490..8683- (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTTCCACACTTGGGCTCTTGAACCGACTCCCCATGGGCACGTGGTCCCT
CTCTCCCATGAGGGTCGCCTTACTTCGAGAGACCACCTCTCCCGCTGGGC
ATGCTGCTGGTACAACAAGAGGAAGAAACAACAATTACACCACCATCGCC
GCCGCCGCCAAACGTGGTAAGGGTAGCGAACGTGTCGAGAGAGGCAGTAG
GGTCAGCCGGCGACGGGGGCATGGTGGAGAGAGGGGTGGGAAGAAGGGAA
GCGGCAGGAGGAAGATGCACAGGAGCAGGAGGGAGGACGAGAAGCAGGGG
GAGGAAGAAGCGGGAAATGAAGGAGAGGACGAGAAGCTTATGCATCGCCA
GGTGGGCGGATAGTGGGGTTTGTACCCTGGTGGAGGTGGGGAGGGTTGGG
ACTTCGTATTAGGTGGGGGATGGATGGGACAGCGTCAGGGGTAATGGGGG
AGATTAACAGACATGGCGTACGGACTTTGTTTGAAAAATGAATTCGTTTT
CGTACCTATCACTACCTCGTCAGTAAAGTGGTAAAAGTAACAAGTTGTAT
GTTAAGGAATGTGTTGATTTTTATCTCTCTTAGGACGGCGCCTCCGGGGG
GGAAACCTGTATCGGATGAAAGATCTCGTTAATAGCTTTCCAGTGCACTC
CTCAGGTGTTGTCACAAATTGACTCTTTGAACCTCCAACGCCAATATACA
TATATACTTTAGAATATTAAAAAATGATGTTTTTAGCTCGTTTCTCGTCA
CTACCAAGAATGTGACATAACATGAGGGTATATCTCAAAAGCCTGTGCTG
TCAGGTTTCGAACAGTACCTGGCACGGGCTATAACTTCCTGCCTTACGGG
GTTTCAAAACAAAAAAGATGGAGTATGGGTTTGGTTTCTACGACCCAAAC
AATATCCATTATCCAATAGTACAGTTGTCATCATCCAATGATCTCTCCGC
ATCGTGGTCTGCAGCACACAAATTTGAGGTAAAAATGGTGCAACATCTCG
CTAGTAAATAGAGTCGACTGCATTGTTGTTCTAGATGTACACCGTGACGT
ACATTTCATTATTTCACCCCCCGGGAAAGAATACGAATAATTGGCCTATT
CGCCATAAAAATTACAAATTATTCCCCTGAGTTTCGGAATGACCTCGTGT
ATTCCATTTCCCCCGGACCATCCATGACTGCTAATAATACTCGTAAATGG
AATGGACAGGGTGGATACTCTTACTTTATTTTCGGCTCATTTTGAAACTC
AGGCGACTATTTTTCATTTTCATGGCGAGTACGCCAATTATTCGTATTTG
TCCGGGGGGGTGACTACTTAACATGACGGTCATAACAATAAATTTATTCA
CATCGTCATTATATATTTATCGGATGTATAGGGCATCCTTTCTTTTAAAA
AAACTGAAAAAAAAACAAAAAACGCCTGGCATTGCTGACATGTTGCACTT
CATTTCACCAAACAAAGGGGGAAAGTAAAGTTCCGAATATTCGGATGAAA
TTCACAATACTGAGATATGTTTTCGCGAGGATTCAGAGGATATTTTTTTC
CGTGTTTTTTCGTCCATGGCATCAGAGTTTATGAATGACACACACGCCCG
CATCCTACTACATGGAGGGGAAGCAACGTAACATTCTCGCCGAGAATACG
ACTGACGCAGCACCCACTCCTAAAACAGGCTCAAGCACCGTCAGGAGGAT
GATGTTTTCCACCGGTTGCCCTGTTGCGGGCGAAATAAGGTGCCCTTACT
CGCGTGAGGGGTGCCATCAATCACAACGTCCGAACCCTAAAGCATGGGAT
ACGACGAGGTGATGAAGACGGTATGTCTCACGGAGAAAAAAATAAGCTAG
TCTCTTGCTCAAAATATAGTCACACATCTGAAGAGGGGTATTGCCTATTC
GCCAATTTTGTTTTTCAATGGGCCAATGGCGATCGCCTTGTTAGGGCGGT
ACATTTTTATTGGGATCTATATGTGATGACATGTTTTTCTTATTTTTTTA
AGTGTCCTGCTTTGCTAGTTTATTTCGTCGATATTTGTATCGTTTTCATT
TTTGATACCACATGGTTCGAAACACATCCAAGGACGTAGCAAGAGGGACA
CTGGTGAATCCGAAGGTATCAAAAGAATGGTGAGGAGTCCAGCTTTATAA
CCGTGCTTGGTGCATGCTTGAAAACAAAATGGAACGTGAAGGAGCACGGA
CAAATATGGGTACTTCGAAACAAACTTGGTTTTACTGGATAAAATATTTT
CGAACCCAATTTTGAGAACCAACGTGCGGAACCAGTATCTAAAAACCTCG
CTGAAATACAGGGAATAATATGCACCAGTCAGAGTGTGGAACACAGCTTT
GGATGTGAAGATACGCACGCTCAAACGAGGCGGCCAAGATATACCTTATC
TATCAAGCGATGCCGAAGCCGAGTACCGTTATATGTGCATGTGTGTGTGT
GTGCATGTGTGTGTGCATGTGTGTGTGCATGTGTGTGTGCATCTACGTGA
CGCCAATGCCGTGCCCTTTCGTTTGCGCTATCGCTGACTGGGTGACGAGA
TGAATTCGCCCATTTAGCATGTTGAATAGCACTGTAAATTTGTAGTAAAA
TTACGTATGAACAGTCAAAAATTTATGCATGACATTTTACAAAAGTGTTG
AATTGCAAGTCGTTGGTATTTTTTACACAATAAACATTACTTAACTTAAC
GGGTATTAAATAGTTTCTAATTCTTTATTTTTCCTCGTGATCACCAACCA
TATCGGCACCGTGAGTATGCATCATCGTTTGGTGTCTGGGACTCAAAACT
GAGCGCGGTGTGGCAAACAAACAAAAAACGAATATGAGATGAATCAATCA
TAAGAGAAGATCAGGACGCATAACACACAGAAAAAAAGTTTCATCACACG
GAGATCGCAACAACAATCTACCACCGTAATAGCGATCTTGGAGGTGCTGT
TAAGGAGATACGCCCCAAGATGTTGCGTGAGAACATAATACAAGTATATG
CCATTGCCAGAGAGCCCAGGCCAAAAACAATGAGGTTTATTCGTTGTGAT
GTGTAGCAGGAATACTATGTGGGGTGGAGAGTACACTCGATATCCCGTTG
TGCTTCCGTTTGTTTCTGTTTTATGGGTCCATAAAATGTGGTGGCTTGCC
TGGGTGTCGTCATCGCTTTTTCGAAGGAGAAAATTATTCCTGAGGCAGCA
CTTCACGTTTTTTCCGATTGAACCTGAAAATTTACGTATTGCAGCTGAAG
TGCTTATGGTGTTGCGCAGTTGTTGATTGGTATCAGCTTTTAAAACAGTA
CCACTCTGAGCTGAAACACAGTTAGCATTTGGATATTTTGCGGTGCAACT
CCTGCTGGTCGACGGTTTTTTTAAACGTTTTTTTCTGCGCTCGGCTGGAA
TATGACGAACAGCACCAGAACCGATGTTTTTGAAGTTTTCGCCACTTAGA
CCGTCCCCCCGGGTTTCCACTTTTTGAGTATACTAAATCGCCTTGACATT
TAGTGTACTAGGAATATTTGTGGTATCACTGACGACCTTCCTGTCTGCTC
CTGCAAGCTAAGTGCGGACGAGTGTGTGTACAGGGCCGGTGGTATGCTAA
CGCGCACGTATAAAGATCGCTCGCGGGTCGATGCAGCGCATGTGCGCTGT
ACTATTCGTGTGTGAGGGTCACGACGGTCGGTGGTATAGCAGTGGGGTAA
AAGCTGTCATCAGCAGGAACGGCCATACCACGTCGATAGCACCACATCCC
GTTCGCGCTGTGAAATTAATCGCTTTGGGCCAGGTTAGTACTACGTTGCG
GGACCACGTGGGGAGAATGAAGCTCTGGTATTTTTCCTTTGTACTATTCG
TCTGCTGCAAGTTCATTTCCAATGAATTATGATCAGCAATTTTCTCCAAA
GATGTCGTTGAAGCGCTTTGTGCACGTGCAATCCTACCATCATGGACATG
CCAAACACGGTGCGGGCCGAGAGACCCCAGGTTTCTTCACGTCAGTTCAT
CACTGCGTGTTGCGCCAATTGAAAATGATGGACTATAGTTTTTATTCCAC
TTGATACCAAGTCATGTAACAAGGGACTGGCTGACTGAGACCCACCCACA
CTCGTGCACGCTCAGCTGCCGGGTGAAAGTGGCACAACACGATGCACATT
CTTCTCCGCCATAGCCCAGTAGGTAGAACATGTAATGACGGCCCCAAATC
ACGTTGACAATCTGTATGCGGGGATGTTGGTGGCATCACTGACGACCTTC
CCTATCTGCTTCTGCAAGCCAAATGCGAAGGCGTTCATGTACGAGGAGGG
TGTTATGCTAACGCGCACGCATGAAGATCACTCGCGGGTCAATGAAGTGC
ATGTGCGCTTTGATATTCGTGTGTAAGAGTCACGATGGTCGGTGGTATAG
CAGTGGCGTAAAGGCTGTCATTATCAAGAACGGCCATACCACGTCGATAG
CACCACGTCTCGTTCGCTCTGTGAAGTTAAGTGGCGTCGGGTCAGGATAG
TTCTACGGTGGCGGACCACGCAGGAAGTCATAGTGCTTTTTTTTTTAATT
CATCCGTCCCCTCAACACCCCTACGGCAAAAAAAACCCGAAGCCGACAAG
AAGTAATGACTTTGTGCCTGGAACCGCAACGCCAGGGTTCCAATTACCAT
ATATATATATCAGTCTTGTTGTTCGGTCCCGACTGCCGCGAAAGCGGAAG
ACCACCTACCGCCACTTGAACAGAACGCCAGACACGTAGCGGCTATCGCT
CGCATCGAAATGTTGGGAGTGCTGATGCCTGCCAGCCCCCGCCCCTCTCT
TCATTATGTCCCACAGATATGGTGCTGCATGCAGTAGTACACCAATTGTG
CTACATATAGCACTCTCTTTTTTTTGTCTCCGTCCGCAACTCTAGGGCAT
CAATCTTTTGCGCTGTCTAGCCGACTGTCACCGCTTGATTGTACTGCAGT
CTAGTTGTATTACCTTTACATGAAGCATGCGGCATTGCGGCTGCTGTAGC
CAGCCCTTGACGTACGTAAATAGTTTAAAAGAAGGTGATGCCTTTTTGCA
AATAGCGTCGAGATTTGATATTCTAATGTCAGAGATGACGATAACCCGTC
ACAATCTCGCTGTACTATTTTACAGATGTTGACGTACAGATCTGATCTCA
ACCCGACCAAAGCAGTTGTATCCGTCGACGCGTGGTAGCCCCCAACTCCC
TGCCGAAAAGCACTTTCGTTCTCTATTTTGCCACGTGGGACTGTAAAAAA
TCCCGCTTCGAAGTTTATCGCAATACAGTCAGCCTGATGTGAAAGGGTTT
GAGCAATCGCGAAAGGCGAGGTTTGAGGTAAATAAGATCAAAACCTTTTT
GAGCCAGGTTTTGCAAAGTAAGAAAGAGCGATTAGCAGCCGGAGATGGCT
TTTTTTAGGAAGAAAGTTCCGTTCTTGTGAGGATGCGTGGTCGATAGTCT
AAAAAATTACGACATGCAAACAAAACATGAATATACCTCCCCCGATGCCC
CCACCCCACGTACCCAATGTGCGTGATTGGCGTTTTTTGCTGTGGGCGTG
CTGTAGTATTCTCTTGCCCTTAGTGCTGTGGAGGGTGCCGGGTGGTCGGG
AACGTGGTTGTTCCGCGTGACTTATGATGCCGAATCTGACGAGGTGTGGT
TTCAGACCTCCCTAGCGCAGAGGAGAGGGCCATTCGAGACAACACTAGGC
AGCAATCAGGTCAGTGCCAACGGGTACATGTTAGTGGTACTCTCGCTGAT
GCGCTCTGCTTTGCTCGCTCGCCCTTCCCCCCCCCCGTCTTGGCGTGTTT
TTTTCTTGATGGGTTTTCGGATTCAAGGTACAAGCTACGTATAAACCGTC
AGCACAACACGTGTAGTGAGCAGTCCCCCCCCCCGCCGTCGCCGCCATCT
GAGTACACGGACTGGGCTTTCCTCGATTTTCGTGCTTGAGTAAATTATCG
TAGCTTTACAGTGTGTTGTTGTGTTACTTCGGTGATGAGCTTTCTCAAGA
TATCTTTTCTCGAAAACTACGGCGCTGTCTCGTGACACCGCACGTATTCT
CGTTGTAAACATCTCGTCGAGATACCAAGTGCCATTAGATGAATACAAGT
GCTCTTTCGACAGCGCAGGCTCTTTTTTTTGCTTCTCGAGCTTGAGAAAG
GTCGTCGTTATCAGAGATGATGTACTGTACTGACGGGCTGACTCTGCTCA
AGCAGTCTATCCAGGGAAGAACCCTACCCAGTTTGGGTCCCACAGAGCGA
TGCGGAGACGGCCGAATGCGGGTGTACCCGAGTTTCGTGGATAGACATGC
CAGCGTTAATTTTGGTTGGTTTGTGAAGGACGCCCTCTACTCCACTGTGG
TACCCCGAAACTTCGAACAATACTATCGATAACCTACACCTATCAATTCC
TTCTTCGGGGTGCCGATTAGAAGGATGTAACGTAGGAATATGGCCCCAAG
CAAAGCATCGGACGACGGACGCTGAGTGCGATATTCGGGGTTCGGCGCGG
TAAAATGTGAACAGGATCCCGCGAATTATGTTGTCAACCTTCAGAAATGG
TGTTGTGAATCGCGATTGACTTCCCCGACCTTACAGTATCGCGGTTTACG
GCGACATTTTTTCACGTGTTTTTCTCCAGGCTGGTCGGGTGAAACGTGTG
AATGAAGACATGCTGGAGCGCGGTGACAAGCACGCTAAGGTGTTGCGAAT
TCGAAAAGAGCAATACAGTAGGTGCGATGTGTGTTCCTCCCACCCGTTCG
GTCGAGGCTAGCCTATTTGGTCAGAGAGGGGGAGCCTTTACAAATTATGC
GGTTATATGTTTTACGTGTATCGTTAGCGTCCGACACTGTGCAGACTCGA
TGTGATTCGTACATATAACATAGATCAATGCCCAGGCCAAGAAGATGCAC
AATAGGACTAATCATGTGACTAATCCTATCCAGTTTTTCACCCCACAACG
GCTGATGCCGACTTGCTGAGGTATCAAACCGATAGACGGATTGAATTTGT
TCTTGCACCAGACTGGGTGTGTACGAATTATTGGCCCAAAAGGTTTCGCG
CAATCAAATAGCTAGAGTTTGGTGTGTACAATCCCCCCCCTCCCCCGATT
GAAAATTATTGTCTGCCGCACGGGTACATGCTGGCAATTCAAACCGACCG
GTCCTCAGTGGAGGAGTGAGTAGCAACTCAAGTGTTCCTGAAGGCCACCG
AACCCATCGAAGGAGTCGATCTTTGTGAAGTCGACGTTTCATACCGTCGG
AATTAAGTCTTGCTTTTGGATTGGGCAGGAGGTTAGCTCACCTTTAAGAG
AATCCCGTACGTGTTGGCGTATGTGATTGTCACGATGCATGGAGTCGGAT
TGTGAGTATGCACGACAAGTTGAGTTGGGAGTGGCGTGGAATTACTGTCT
GGGCGTGCGTCGAAATGCCTACTCATGACGCCGGAATTGCGGATTTTTGT
CGTGTAAATGAAGGGTTGATATCTGTGGTTGCCGCACTTGCCGGCGTTTC
CGGCGCGTGGTTCAATGTACTCTCGGTGGGATAAACAGAGCTACAAGCCG
GAGAGACCATTTGCCCATGTCATGAAACGGAGTCTTACTGCGCTCGTGTA
CCACGTTCACAATAGATTCCGGCGATATTATGCCGCGTCTTTAGGTTATT
TGCATACCATCGCAAAAGCTGTAAGTTGTTGGATAATACTCGTGTGATTC
TGAGCTTCCCATCGTAATGGGTTCATTTTCCATTTTTGATGTTTGGTAAA
GGTCAACAGGTCCCTGTGCGTGTGTCCACCAATGTGTACTTGCAGTTCTT
CATTTTCATAGATGGCTTTGCGAAAATGATGCTGATTTCTTCGTTTGTTC
TTTAGTCTCGAGAGAAGCAAGCTGCTTCGTTTGAGCTACCTGGCGCGCCG
GTCGGCTCCGTCAATGTAGATATGAGCTGGGATGTTGTATGCGTGATGCA
TATTTTTTTGCTCTTTTGACTAATTTACCCGCTATTGCAGCTTTCTACTT
TTTGTTCTCCAGTATCAGGCGTCGTTTTCACTTGGCTCCTAGAGCATGAA
ATTCTGCGTTTCCCCCACCCTTCTCTCATATGGTCGAACAGGATTTCTTC
GCTTTCTCGAAGTCGCGCGATAAGTAAGAAGGAGCTAGAACGTGATCGTA
TCCTCCATCCGGAGAAATACAAGCGCGTGCATCGCTATATGAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10529:490..8683- >mRNA_H-paniculata_contig10529.345.1 ID=mRNA_H-paniculata_contig10529.345.1|Name=mRNA_H-paniculata_contig10529.345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig10529:490..8683- (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTTCCACACTTGGGCTCTTGAACCGACTCCCCATGGGCACGTGGTCCCT CTCTCCCATGAGGGTCGCCTTACTTCGAGAGACCACCTCTCCCGCTGGGC ATGCTGCTGGTACAACAAGAGGAAGAAACAACAATTACACCACCATCGCC GCCGCCGCCAAACGTGGTAAGGGTAGCGAACGTGTCGAGAGAGGCAGTAG GGTCAGCCGGCGACGGGGGCATGGTGGAGAGAGGGGTGGGAAGAAGGGAA GCGGCAGGAGGAAGATGCACAGGAGCAGGAGGGAGGACGAGAAGCAGGGG GAGGAAGAAGCGGGAAATGAAGGAGAGGACGAGAAGCTTATGCATCGCCA GGGTTCCACACTTGGGCTCTTGAACCGACTCCCCATGGGCACGTGGTCCC TCTCTCCCATGAGGGTCGCCTTACTTCGAGAGACCACCTCTCCCGCTGGG CATGCTGCTGGTACAACAAGAGGAAGAAACAACAATTACACCACCATCGC CGCCGCCGCCAAACGTGGTAAGGGTAGCGAACGTGTCGAGAGAGGCAGTA GGGTCAGCCGGCGACGGGGGCATGGTGGAGAGAGGGGTGGGAAGAAGGGA AGCGGCAGGAGGAAGATGCACAGGAGCAGGAGGGAGGACGAGAAGCAGGG GGAGGAAGAAGCGGGAAATGAAGGAGAGGACGAGAAGCTTATGCATCGCC AGTATTCTCTTGCCCTTAGTGCTGTGGAGGGTGCCGGGTGGTCGGGAACG TGGTTGTTCCGCGTGACTTATGATGCCGAATCTGACGAGGTGTGGTTTCA GACCTCCCTAGCGCAGAGGAGAGGGCCATTCGAGACAACACTAGGCAGCA ATCAGTATTCTCTTGCCCTTAGTGCTGTGGAGGGTGCCGGGTGGTCGGGA ACGTGGTTGTTCCGCGTGACTTATGATGCCGAATCTGACGAGGTGTGGTT TCAGACCTCCCTAGCGCAGAGGAGAGGGCCATTCGAGACAACACTAGGCA GCAATCAGGCTGGTCGGGTGAAACGTGTGAATGAAGACATGCTGGAGCGC GGTGACAAGCACGCTAAGGTGTTGCGAATTCGAAAAGAGCAATACAGTAG GCTGGTCGGGTGAAACGTGTGAATGAAGACATGCTGGAGCGCGGTGACAA GCACGCTAAGGTGTTGCGAATTCGAAAAGAGCAATACAGTAGGATTTCTT CGCTTTCTCGAAGTCGCGCGATAAGTAAGAAGGAGCTAGAACGTGATCGT ATCCTCCATCCGGAGAAATACAAGCGCGTGCATCGCTATATGAGAGATTT CTTCGCTTTCTCGAAGTCGCGCGATAAGTAAGAAGGAGCTAGAACGTGAT CGTATCCTCCATCCGGAGAAATACAAGCGCGTGCATCGCTATATGAGA back to top
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