mRNA_H-paniculata_contig10528.344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10528.344.1
Unique NamemRNA_H-paniculata_contig10528.344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 6.550e-36
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            +GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLY+LGADALTPAYPRLTDDG NT+RRTHLE+F+
Sbjct: 1307 EGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNTYRRTHLELFV 1376
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: D7FI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI13_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.170e-35
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            +GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLY+LGADALTPAYPRLTDDG N +RRTHLE+F+
Sbjct:  490 EGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 559
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A7S2XY64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY64_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.210e-32
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            +G  VALG T+ILQYV+QGL+HPARRVR+VYWK+YN+LYM GADALTPAYPRL DDG NT+RRTHLE+F+
Sbjct:  275 EGCMVALGPTKILQYVMQGLYHPARRVRDVYWKIYNTLYMFGADALTPAYPRLEDDGLNTYRRTHLELFI 344
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A6V1S7R5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S7R5_HETAK)

HSP 1 Score: 122 bits (307), Expect = 6.430e-31
Identity = 54/69 (78.26%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    4 GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            G +VALG TR+LQYVLQG++HPARRVR+VYWK+YNSLY+ GADALTPAYPRL D+GANT+RRTHLE+F+
Sbjct:  827 GCAVALGPTRVLQYVLQGMYHPARRVRDVYWKIYNSLYIYGADALTPAYPRLEDEGANTYRRTHLELFV 895
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A1Z9QC94_9BACT (TOG domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 117 bits (293), Expect = 5.030e-29
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            +GM VALG  +ILQYVLQGL+HPARRVR+VYWKLYN++Y+ GADALT AYPRL DDG NT+RRTHLE+F+
Sbjct: 1204 EGMIVALGPIKILQYVLQGLYHPARRVRDVYWKLYNTIYIYGADALTCAYPRLEDDGVNTYRRTHLELFV 1273
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A7S3GVU2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVU2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.060e-28
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            + M VALG  ++ QYV+QGLFHPAR+VREVYWK+YNS+Y+ G DALTPAYPRL DDG N +RRTHLE+F+
Sbjct:  387 EAMIVALGPAKLFQYVMQGLFHPARKVREVYWKIYNSMYIYGQDALTPAYPRLEDDGVNNYRRTHLELFI 456
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A7S3GVL6_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVL6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.260e-28
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            + M VALG  ++ QYV+QGLFHPAR+VREVYWK+YNS+Y+ G DALTPAYPRL DDG N +RRTHLE+F+
Sbjct: 1137 EAMIVALGPAKLFQYVMQGLFHPARKVREVYWKIYNSMYIYGQDALTPAYPRLEDDGVNNYRRTHLELFI 1206
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A2P4YHC9_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHC9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.910e-27
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEV 204
            +G  VALG   ILQYVLQGLFHPARRVREVYWK+YNSLYM   D LTPAYP L DDG N++ RT+LE+
Sbjct:  103 EGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPALDDDGVNSYNRTYLEL 170
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A812NDD3_SYMMI (Sf3b1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NDD3_SYMMI)

HSP 1 Score: 110 bits (275), Expect = 1.360e-26
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 QGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            +G  V+LG   +L YVLQGLFHPAR+VR+V+WK+YNSLY+ GAD LTP YPRL DDG NT+RRTHLE+F+
Sbjct:  997 EGCMVSLGAGTVLLYVLQGLFHPARKVRDVFWKIYNSLYIFGADGLTPFYPRLEDDGVNTYRRTHLELFI 1066
[Close]
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Match: A0A4D9CY01_9STRA (TOG domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY01_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.460e-26
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    4 GMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPRLTDDGANTFRRTHLEVFM 210
            G+ VALG T++  YV+QGL+HPAR+VREVYWK+YN+LY+ G DALTPAYPR+ D+G +TFRRT LE+F+
Sbjct: 1249 GLVVALGPTKVFHYVIQGLYHPARKVREVYWKIYNTLYIFGTDALTPAYPRIEDEGIHTFRRTTLEIFI 1317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10528.344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ74_9PHAE6.550e-3691.43TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI13_ECTSI1.170e-3590.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XY64_9STRA4.210e-3277.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1S7R5_HETAK6.430e-3178.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z9QC94_9BACT5.030e-2975.71TOG domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7S3GVU2_9STRA3.060e-2870.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GVL6_9STRA8.260e-2870.00Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A2P4YHC9_9STRA4.910e-2772.06Splicing factor 3B subunit 1 n=1 Tax=Phytophthora ... [more]
A0A812NDD3_SYMMI1.360e-2668.57Sf3b1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A4D9CY01_9STRA3.460e-2666.67TOG domain-containing protein n=2 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10528contigH-paniculata_contig10528:4161..4373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue7.6e-29
Seed eggNOG ortholog2880.D7FI13
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Exons1
Model size213
Cds size207
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928756.5859075-UTR-H-paniculata_contig10528:4160..41661622928756.5859075-UTR-H-paniculata_contig10528:4160..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10528 4161..4166 +
1691480607.3146527-UTR-H-paniculata_contig10528:4160..41661691480607.3146527-UTR-H-paniculata_contig10528:4160..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10528 4161..4166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928756.5962882-CDS-H-paniculata_contig10528:4166..43731622928756.5962882-CDS-H-paniculata_contig10528:4166..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10528 4167..4373 +
1691480607.3252594-CDS-H-paniculata_contig10528:4166..43731691480607.3252594-CDS-H-paniculata_contig10528:4166..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10528 4167..4373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10528.344.1prot_H-paniculata_contig10528.344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10528 4167..4373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10528.344.1

>prot_H-paniculata_contig10528.344.1 ID=prot_H-paniculata_contig10528.344.1|Name=mRNA_H-paniculata_contig10528.344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYMLGADALTPAYPR
LTDDGANTFRRTHLEVFM*
back to top

mRNA from alignment at H-paniculata_contig10528:4161..4373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10528.344.1 ID=mRNA_H-paniculata_contig10528.344.1|Name=mRNA_H-paniculata_contig10528.344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig10528:4161..4373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAATGTCCGTAGCACTTGGCGTTACTCGCATTCTCCAGTATGTGCT
GCAGGGTCTGTTTCATCCCGCGCGTCGCGTGCGGGAGGTGTACTGGAAGC
TGTACAACTCTCTCTACATGTTGGGGGCGGATGCGCTAACGCCGGCCTAC
CCTAGGCTTACTGACGACGGGGCAAATACTTTCCGGCGCACACATCTGGA
GGTGTTTATGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10528:4161..4373+

>mRNA_H-paniculata_contig10528.344.1 ID=mRNA_H-paniculata_contig10528.344.1|Name=mRNA_H-paniculata_contig10528.344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig10528:4161..4373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGTAGCACTTGGCGTTACTCGCATTCTCCAGTATGTGCTGCAGGG
TCTGTTTCATCCCGCGCGTCGCGTGCGGGAGGTGTACTGGAAGCTGTACA
ACTCTCTCTACATGTTGGGGGCGGATGCGCTAACGCCGGCCTACCCTAGG
CTTACTGACGACGGGGCAAATACTTTCCGGCGCACACATCTGGAGGTGTT
TATGTGAATGTCCGTAGCACTTGGCGTTACTCGCATTCTCCAGTATGTGC
TGCAGGGTCTGTTTCATCCCGCGCGTCGCGTGCGGGAGGTGTACTGGAAG
CTGTACAACTCTCTCTACATGTTGGGGGCGGATGCGCTAACGCCGGCCTA
CCCTAGGCTTACTGACGACGGGGCAAATACTTTCCGGCGCACACATCTGG
AGGTGTTTATGTGA
back to top