mRNA_H-paniculata_contig10523.341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10523.341.1
Unique NamemRNA_H-paniculata_contig10523.341.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10523.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10523contigH-paniculata_contig10523:4928..8687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2774
Cds size1509
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10523.341.1prot_H-paniculata_contig10523.341.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10523 4982..7476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928755.2490938-UTR-H-paniculata_contig10523:4927..49811622928755.2490938-UTR-H-paniculata_contig10523:4927..4981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10523 4928..4981 +
1691480607.1863837-UTR-H-paniculata_contig10523:4927..49811691480607.1863837-UTR-H-paniculata_contig10523:4927..4981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10523 4928..4981 +
1622928755.2881775-UTR-H-paniculata_contig10523:7476..86871622928755.2881775-UTR-H-paniculata_contig10523:7476..8687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10523 7477..8687 +
1691480607.2387857-UTR-H-paniculata_contig10523:7476..86871691480607.2387857-UTR-H-paniculata_contig10523:7476..8687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10523 7477..8687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928755.2618375-CDS-H-paniculata_contig10523:4981..50171622928755.2618375-CDS-H-paniculata_contig10523:4981..5017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10523 4982..5017 +
1691480607.2048993-CDS-H-paniculata_contig10523:4981..50171691480607.2048993-CDS-H-paniculata_contig10523:4981..5017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10523 4982..5017 +
1622928755.2753108-CDS-H-paniculata_contig10523:6003..74761622928755.2753108-CDS-H-paniculata_contig10523:6003..7476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10523 6004..7476 +
1691480607.223694-CDS-H-paniculata_contig10523:6003..74761691480607.223694-CDS-H-paniculata_contig10523:6003..7476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10523 6004..7476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10523.341.1

>prot_H-paniculata_contig10523.341.1 ID=prot_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=503bp
MNYFGFRKISKQEKHSGDILNLTRRTNIKDGESNSAISVLEQPLSKYIEK
SGGCDHDDHGNSENGSDAIRKAGSEFKRKKPASDVNIGGHPRSAKRQTQP
LQDRKSNRSEDAPSMFHGDTDDRRDAGGSDNDDMGGIVNVSGWQRPLLSQ
SRAAAGNGDGKSVVLPFSAVECGVDGVKGGATTRSKGSSRWVAGKDMVTS
TSALADRKRNQSCREDEENFLYRDTAAFRNILTTVDVEVDVLYDGGDDDC
DMAKAPVTSAFDDSLSTFGGDSSKSIGIGGEQEDCDSDGDSQHRFVDCPI
TSISTGVHPFPPPVDTASSTVLDTCTWNRSPKLKLWGEAINSPTLSPRPV
LSRVSHNRQNQASFPPGRIWIPSSPLPLRSFHEDDIEFVTKDFGDCLLSD
YQMSEARVTGTDLSFEHDTMHNNDSMFLSNSGGGSIGGKGGGIENSSAAS
PKTEMGNWRASIEMNSGRGTTGVRSPTALPPTPASLSLQSPVQEVAPWLR
GL*
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mRNA from alignment at H-paniculata_contig10523:4928..8687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10523.341.1 ID=mRNA_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3760bp|location=Sequence derived from alignment at H-paniculata_contig10523:4928..8687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTACCGAGGTACTTCAGGCTGAGCAGCAAATTTTCTTGTTTCCAGCG
AAACATGAACTACTTCGGATTCCGGAAAATATCAAAGCAGGTGTGATTCA
GCCGTCAGTTTTGAAATAAGTGCCCTTCGCGTAGAGAGACATCGTGTGTG
GGACTGTTGCATGCGTAGGGCCGTTGACCGTGTGAAGTAACTAATATAAT
GGTGTTTTGCATTTTGATGTGCTCCTAAAGATTGGACTTCGCACACAGCA
CGGAAATATCTGTTCTAGTGTTATGGTAAATAGATGCGGACTGCATCGTC
TTGCGCCCGGCAAAAGAGGTTTCCTCTATCCAAATATTCAGACAACAACG
CTCGGGTGAACAACGTCGAGGTGTACCTTCTATGCCTTGCGGTGTGAAGC
GTTTATTTCACGTAGGAGAGTGATGTGATGTCGCTCGTAAAGGGTATGCT
GTGTAGCTGAAATGCAGATATATCCTGCCTCGTTCAGTATCAGCGCCAGA
ACGATGAACCATAGACCTCTTTCACGGTATCGTCGAGGAACCAACACCCC
CCTTTAGATGCCCTCTCACTCGATTCGCGTATGTTGCTCTTCGCATATTC
CCTGCATCCCACTCATTGCATGTGTGCTCATTCTTTGATGTTGTGTCCGG
TCCCACTGGAATACTGGGATTGACAAGCCTTTGGTTTTTTACAACTACAC
CCTCAAGGTGAGGGGCCCTTCGACACAGTCGGCAAGACAGTATCTATTGT
ATTGCGCAAACGACGTGCATCATTCCCTCCAGAATAACACATTCACTGCC
GGAGTGCACCGCCGTTTATGCTTCACACTTGATGTGGCTCATGATACGAA
CCTGTTAGATATTTTTTCTTCCGAAGCCTCTAGGCTAGGTTCCCATATCC
GTACATCACGGTCTTTGTCGATGATGTTGGCCGGAACCAGAGCTCAAGAT
TTTTACAGTACCCCCCGTGCGAAAGGCGTCGGCATTCTCGCAGAATATTC
CCAATCTAGCATACACCCGTTTATCCAACCCAACCTCAATGCACCGAAAC
AGCCCGTCGTCATCTCTTGCTCACAGGAAAAGCATTCTGGAGACATCCTT
AACCTTACACGCCGCACCAACATCAAAGACGGCGAGTCGAATAGCGCTAT
CTCCGTCTTGGAGCAGCCGCTGTCCAAGTACATCGAGAAAAGTGGTGGTT
GTGACCACGACGACCATGGGAATAGCGAAAATGGCAGCGATGCGATCAGG
AAAGCTGGTTCAGAGTTTAAACGCAAGAAACCCGCCAGCGATGTCAACAT
CGGTGGCCATCCGAGAAGTGCTAAACGCCAGACGCAGCCTCTGCAAGACA
GGAAGAGCAATCGATCAGAGGATGCCCCGTCAATGTTCCATGGCGATACC
GACGACCGCCGTGATGCGGGTGGATCGGACAACGACGACATGGGGGGTAT
TGTCAATGTATCCGGCTGGCAGCGCCCTCTCTTGTCACAAAGCCGTGCAG
CTGCCGGCAATGGCGACGGAAAGTCTGTTGTACTGCCTTTTTCCGCTGTT
GAATGTGGAGTCGATGGGGTGAAAGGTGGTGCAACGACCCGCAGCAAAGG
CAGTAGTCGGTGGGTGGCGGGCAAAGATATGGTGACCAGCACTAGTGCCT
TGGCTGATCGGAAACGAAACCAATCATGCCGGGAAGATGAAGAGAACTTC
CTTTACAGAGATACCGCGGCGTTTCGAAATATCTTGACGACGGTCGACGT
AGAGGTCGATGTTCTCTATGACGGTGGCGATGACGACTGCGACATGGCAA
AAGCGCCAGTCACATCTGCATTTGACGATAGTTTGTCTACATTCGGTGGC
GATAGCAGCAAGAGCATTGGCATCGGCGGTGAGCAAGAAGACTGCGATAG
CGATGGCGATAGCCAGCATCGATTTGTTGATTGTCCAATCACAAGCATCT
CTACCGGCGTGCATCCTTTCCCACCACCAGTGGATACCGCGTCGTCAACA
GTACTTGACACCTGCACATGGAATCGTTCCCCGAAACTGAAGCTGTGGGG
GGAAGCAATCAATTCTCCAACTCTGTCCCCGCGGCCTGTACTGTCCCGTG
TATCCCACAATCGCCAGAACCAGGCATCGTTTCCCCCTGGTAGGATTTGG
ATACCCTCCTCTCCTCTACCTCTGCGTTCCTTCCATGAGGACGATATTGA
GTTTGTGACAAAAGATTTCGGCGATTGTTTGCTGAGTGACTATCAGATGT
CGGAGGCAAGGGTGACGGGGACGGATTTGTCTTTCGAGCACGATACAATG
CACAACAACGATTCGATGTTTCTCTCCAACAGCGGTGGCGGTAGCATTGG
CGGAAAAGGAGGGGGGATTGAAAATTCTAGCGCCGCGAGCCCGAAGACAG
AAATGGGAAATTGGAGGGCGAGCATCGAGATGAACAGTGGGCGAGGTACC
ACTGGTGTGAGGTCACCTACAGCATTGCCGCCCACCCCTGCTTCTCTTTC
CCTTCAGAGCCCTGTGCAAGAGGTCGCGCCTTGGCTTCGTGGGCTCTGAG
CAATGGCCGACACATATTTAGTATTCTATTGGCGAGTATCCAGTGCCATG
TCAGATTTTGGATGAGCTGTCGCCCTTCTTTGGAAGAGAGACAGAATTAC
TCAGGTTGAGTTCTTTCGAAGCATTTCAATGTGATGCATGAGGGGAAGAA
GCCCTTGCTGAAAACCAAGTGTCGAGCAGACTTCAAGACACGCGTCAGTC
ATCGGTATGCGTACCCTAGATATGGTGGTCTGCATCGCGCCTTATGTTTA
TATCAATGCTCCCGCTTTTGACCGTCTCTGGGATGGGATGTCGTAGTTTA
CGAAGTATATCACCCTTTGCGGTAAAAGTTTTCACCCGAGTTTCTCAAGC
CTTGTCATGGACGGGTTCGCACGACATTGTAGGGTCTTCCTTCTCGAGAA
GATCTTTTCTCGAGAAAACTGAGTTTGGAAAAACTTACCCCCGAGGTGAT
CTACATTAAACCCTTATAGATCGTAGTTCTGAAAGTTGTTACAAGTCGTG
TAATGCTGGTCTTCGTATTTATTGTCTTGAACCTATGGTTTTAGGTAGAG
GGAGTTTGCGTGAGCTCTATGCCCCTGCCGCCCACCAAACGGCGCATGAT
ACGTATTGAAGGATGGATGTCCCCAACTCTCTACACAGTATACGTTTGTC
CTTGGATTAGCGCGCTGAAGAGCTCGTGTCGTGGTCAGTAGATTGTGCTC
GGGGGGTCATTCAGTAGCGAGGGGTACATCGAAAGCAATAGGGCATCCTG
GTATATCGTTCGTCATTGGTCTCAGGCACATCTGCTGCCGGGCTGTTCTC
CCTTGTTGTGTAGCATTGTGTAGGCTACTTGGACCGAACAAAACCAGGAT
CAGACCGCTCGTGTTGATTCATGCTGCGGGGTTTTCAGTGTTGAGTGCTT
TTTCAGTGATGGCTTCTGCACATGAGGGCGGGAAAACATTCCAGTTACCA
CAAGCTAGAGGAGCTTATGATGGTGTGTGTATATATCATGTGAATATAGA
AACGAAGGCTATCTTGGGTTATGTATCTGCGTGTCACATGTTGTAGGTGT
TTTTATATCATTTGTTGTGTACGAGTGCTTGTCATCTTGGTAGAATTCGT
AATTCAGTATGTACTCAAGAAGATATGTATGGAGTTGTGTTGATTCACGG
CAGAGAGCTTGGAGCTCCCTTGTGACAGTATTATGCCTCGGCTGTTTCGG
CAACAGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig10523:4928..8687+

>mRNA_H-paniculata_contig10523.341.1 ID=mRNA_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at H-paniculata_contig10523:4928..8687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTACTTCGGATTCCGGAAAATATCAAAGCAGATGAACTACTTCGG
ATTCCGGAAAATATCAAAGCAGGAAAAGCATTCTGGAGACATCCTTAACC
TTACACGCCGCACCAACATCAAAGACGGCGAGTCGAATAGCGCTATCTCC
GTCTTGGAGCAGCCGCTGTCCAAGTACATCGAGAAAAGTGGTGGTTGTGA
CCACGACGACCATGGGAATAGCGAAAATGGCAGCGATGCGATCAGGAAAG
CTGGTTCAGAGTTTAAACGCAAGAAACCCGCCAGCGATGTCAACATCGGT
GGCCATCCGAGAAGTGCTAAACGCCAGACGCAGCCTCTGCAAGACAGGAA
GAGCAATCGATCAGAGGATGCCCCGTCAATGTTCCATGGCGATACCGACG
ACCGCCGTGATGCGGGTGGATCGGACAACGACGACATGGGGGGTATTGTC
AATGTATCCGGCTGGCAGCGCCCTCTCTTGTCACAAAGCCGTGCAGCTGC
CGGCAATGGCGACGGAAAGTCTGTTGTACTGCCTTTTTCCGCTGTTGAAT
GTGGAGTCGATGGGGTGAAAGGTGGTGCAACGACCCGCAGCAAAGGCAGT
AGTCGGTGGGTGGCGGGCAAAGATATGGTGACCAGCACTAGTGCCTTGGC
TGATCGGAAACGAAACCAATCATGCCGGGAAGATGAAGAGAACTTCCTTT
ACAGAGATACCGCGGCGTTTCGAAATATCTTGACGACGGTCGACGTAGAG
GTCGATGTTCTCTATGACGGTGGCGATGACGACTGCGACATGGCAAAAGC
GCCAGTCACATCTGCATTTGACGATAGTTTGTCTACATTCGGTGGCGATA
GCAGCAAGAGCATTGGCATCGGCGGTGAGCAAGAAGACTGCGATAGCGAT
GGCGATAGCCAGCATCGATTTGTTGATTGTCCAATCACAAGCATCTCTAC
CGGCGTGCATCCTTTCCCACCACCAGTGGATACCGCGTCGTCAACAGTAC
TTGACACCTGCACATGGAATCGTTCCCCGAAACTGAAGCTGTGGGGGGAA
GCAATCAATTCTCCAACTCTGTCCCCGCGGCCTGTACTGTCCCGTGTATC
CCACAATCGCCAGAACCAGGCATCGTTTCCCCCTGGTAGGATTTGGATAC
CCTCCTCTCCTCTACCTCTGCGTTCCTTCCATGAGGACGATATTGAGTTT
GTGACAAAAGATTTCGGCGATTGTTTGCTGAGTGACTATCAGATGTCGGA
GGCAAGGGTGACGGGGACGGATTTGTCTTTCGAGCACGATACAATGCACA
ACAACGATTCGATGTTTCTCTCCAACAGCGGTGGCGGTAGCATTGGCGGA
AAAGGAGGGGGGATTGAAAATTCTAGCGCCGCGAGCCCGAAGACAGAAAT
GGGAAATTGGAGGGCGAGCATCGAGATGAACAGTGGGCGAGGTACCACTG
GTGTGAGGTCACCTACAGCATTGCCGCCCACCCCTGCTTCTCTTTCCCTT
CAGAGCCCTGTGCAAGAGGTCGCGCCTTGGCTTCGTGGGCTCTGAGAAAA
GCATTCTGGAGACATCCTTAACCTTACACGCCGCACCAACATCAAAGACG
GCGAGTCGAATAGCGCTATCTCCGTCTTGGAGCAGCCGCTGTCCAAGTAC
ATCGAGAAAAGTGGTGGTTGTGACCACGACGACCATGGGAATAGCGAAAA
TGGCAGCGATGCGATCAGGAAAGCTGGTTCAGAGTTTAAACGCAAGAAAC
CCGCCAGCGATGTCAACATCGGTGGCCATCCGAGAAGTGCTAAACGCCAG
ACGCAGCCTCTGCAAGACAGGAAGAGCAATCGATCAGAGGATGCCCCGTC
AATGTTCCATGGCGATACCGACGACCGCCGTGATGCGGGTGGATCGGACA
ACGACGACATGGGGGGTATTGTCAATGTATCCGGCTGGCAGCGCCCTCTC
TTGTCACAAAGCCGTGCAGCTGCCGGCAATGGCGACGGAAAGTCTGTTGT
ACTGCCTTTTTCCGCTGTTGAATGTGGAGTCGATGGGGTGAAAGGTGGTG
CAACGACCCGCAGCAAAGGCAGTAGTCGGTGGGTGGCGGGCAAAGATATG
GTGACCAGCACTAGTGCCTTGGCTGATCGGAAACGAAACCAATCATGCCG
GGAAGATGAAGAGAACTTCCTTTACAGAGATACCGCGGCGTTTCGAAATA
TCTTGACGACGGTCGACGTAGAGGTCGATGTTCTCTATGACGGTGGCGAT
GACGACTGCGACATGGCAAAAGCGCCAGTCACATCTGCATTTGACGATAG
TTTGTCTACATTCGGTGGCGATAGCAGCAAGAGCATTGGCATCGGCGGTG
AGCAAGAAGACTGCGATAGCGATGGCGATAGCCAGCATCGATTTGTTGAT
TGTCCAATCACAAGCATCTCTACCGGCGTGCATCCTTTCCCACCACCAGT
GGATACCGCGTCGTCAACAGTACTTGACACCTGCACATGGAATCGTTCCC
CGAAACTGAAGCTGTGGGGGGAAGCAATCAATTCTCCAACTCTGTCCCCG
CGGCCTGTACTGTCCCGTGTATCCCACAATCGCCAGAACCAGGCATCGTT
TCCCCCTGGTAGGATTTGGATACCCTCCTCTCCTCTACCTCTGCGTTCCT
TCCATGAGGACGATATTGAGTTTGTGACAAAAGATTTCGGCGATTGTTTG
CTGAGTGACTATCAGATGTCGGAGGCAAGGGTGACGGGGACGGATTTGTC
TTTCGAGCACGATACAATGCACAACAACGATTCGATGTTTCTCTCCAACA
GCGGTGGCGGTAGCATTGGCGGAAAAGGAGGGGGGATTGAAAATTCTAGC
GCCGCGAGCCCGAAGACAGAAATGGGAAATTGGAGGGCGAGCATCGAGAT
GAACAGTGGGCGAGGTACCACTGGTGTGAGGTCACCTACAGCATTGCCGC
CCACCCCTGCTTCTCTTTCCCTTCAGAGCCCTGTGCAAGAGGTCGCGCCT
TGGCTTCGTGGGCTCTGA
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