mRNA_H-paniculata_contig10517.338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: D7G4R9_ECTSI (Spliceosomal protein sap, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R9_ECTSI) HSP 1 Score: 234 bits (597), Expect = 4.140e-69 Identity = 112/123 (91.06%), Postives = 121/123 (98.37%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVGEVV+SL++TTLVPGGAEVLLYSTINGSIGA+LPF+SRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQF SLP++KQKLV+ GLDR+VGEVVKKLEDTRNRLL Sbjct: 1134 QFHVGEVVSSLRRTTLVPGGAEVLLYSTINGSIGALLPFKSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFSSLPFEKQKLVANGLDRTVGEVVKKLEDTRNRLL 1256
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: D5A8K6_PICSI (CPSF_A domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A8K6_PICSI) HSP 1 Score: 185 bits (469), Expect = 1.160e-57 Identity = 81/123 (65.85%), Postives = 105/123 (85.37%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFH+G+VVTSLQK +L+PGG E L+Y T+ GSIGA+LPF SR+DVDFF+H+EM++RQE+P LCGRDH+ YRS Y P KDVIDGDLCEQFP+LP D Q+ ++ LDR+ GE++KKLED RN+++ Sbjct: 51 QFHIGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII 173
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A6J1BBV3_9ROSI (spliceosome-associated protein 130 A-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1BBV3_9ROSI) HSP 1 Score: 184 bits (467), Expect = 2.340e-57 Identity = 81/123 (65.85%), Postives = 104/123 (84.55%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFH+G+VVTSLQK +L+PGG E +LY T GS+GA+LPF SRDDVDFF+H+EM+MRQE P LCGRDH++YRS Y P KDVIDGDLCEQFP+LP D Q+ ++ LDR+ GE++KKLE+ RN+++ Sbjct: 51 QFHIGDVVTSLQKASLIPGGGECVLYGTAMGSLGALLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A2P4XG75_9STRA (Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XG75_9STRA) HSP 1 Score: 184 bits (466), Expect = 5.390e-56 Identity = 84/123 (68.29%), Postives = 104/123 (84.55%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VVTS+ +T+LVPGG E ++Y+TI G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSYY+P K+V DGDLCEQF SL +KQ V+ LDR+ EV+KKLED RNRLL Sbjct: 142 QFHVGDVVTSMVRTSLVPGGIEAIIYATIMGRIGALIPFASREDVDFYTHLEMYMRQEQPPLCGRDHLSYRSYYIPVKNVTDGDLCEQFSSLSVEKQASVAEDLDRTPAEVLKKLEDIRNRLL 264
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A835YUV4_9STRA (Putative spliceosomal protein sap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV4_9STRA) HSP 1 Score: 194 bits (493), Expect = 4.830e-55 Identity = 87/122 (71.31%), Postives = 108/122 (88.52%), Query Frame = 1 Query: 4 FHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 FH+G+++TSL KTTLVPGGAEV+LYS+I G++GA LPF +++DVDFF H+EM+MRQEKPTLCGR+H SYRSY+LP K+V+DGDLCEQF +LP D QK ++ GLDR+VGEV KKLED RNRLL Sbjct: 1132 FHLGDILTSLHKTTLVPGGAEVVLYSSITGALGAFLPFSTKEDVDFFVHLEMHMRQEKPTLCGREHTSYRSYFLPVKNVVDGDLCEQFGTLPLDIQKKIATGLDRTVGEVAKKLEDVRNRLL 1253
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A662XMA8_9STRA (CPSF_A domain-containing protein (Fragment) n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XMA8_9STRA) HSP 1 Score: 184 bits (468), Expect = 4.920e-55 Identity = 84/123 (68.29%), Postives = 105/123 (85.37%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VVTS+ +T+LVPGG E +LY+TI+G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSY++P K+V DGDLCEQF SL DKQ V+ LDR+ EV+KKLED RNRL+ Sbjct: 249 QFHVGDVVTSMARTSLVPGGIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPDKQASVAEDLDRTPAEVLKKLEDIRNRLM 371
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A0K9R345_SPIOL (CPSF_A domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R345_SPIOL) HSP 1 Score: 180 bits (457), Expect = 4.970e-55 Identity = 78/123 (63.41%), Postives = 103/123 (83.74%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VV+SLQK +L+PGG E ++Y T+ GS+GA LPF SRDDVDFF+H+EM++RQE P LCGRDH++YRS Y P KDVIDGDLCEQFP+LP D Q+ ++ LDR+ E++KKLE+ RN+++ Sbjct: 111 QFHVGDVVSSLQKASLIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKKLEEIRNKII 233
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A662XU68_9STRA (CPSF_A domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XU68_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.860e-54 Identity = 82/123 (66.67%), Postives = 104/123 (84.55%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VVTS+ + +LVPGG E +LY+TI+G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSY++P K+V DGDLCEQF SL +KQ V+ LDR+ EV+KKLED RNRL+ Sbjct: 181 QFHVGDVVTSMARASLVPGGIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPEKQASVAEDLDRTPAEVLKKLEDIRNRLM 303
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: UPI001493B70E (spliceosome-associated protein 130 A-like n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI001493B70E) HSP 1 Score: 176 bits (447), Expect = 2.580e-54 Identity = 78/123 (63.41%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VVTSLQK +L+PGG E L+Y T+ GS+GA+L F SR+DVDFF+H+EM++RQE P LCGRDH++YRS Y P DVIDGDLCEQ+PSL D Q+ ++ LDR+ GE++KKLED RN+++ Sbjct: 51 QFHVGDVVTSLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHLAYRSAYFPPLDVIDGDLCEQYPSLSADMQRKIADVLDRTPGEILKKLEDVRNKII 173
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: UPI001F5EA347 (spliceosome-associated protein 130 A-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5EA347) HSP 1 Score: 175 bits (443), Expect = 1.040e-53 Identity = 76/123 (61.79%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 369 QFHVG+VV+ LQK +L+PGG E +++ T+ GS+GA+ F SRDDVDFF+H+EM+MRQ+ P LCGRDH+SYRS Y P KDVIDGDLCEQFP+LP D Q+ ++ LDR+ GE++KKLE+ RN+++ Sbjct: 51 QFHVGDVVSCLQKASLIPGGGECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMSYRSSYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10517.338.1 >prot_H-paniculata_contig10517.338.1 ID=prot_H-paniculata_contig10517.338.1|Name=mRNA_H-paniculata_contig10517.338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHback to top mRNA from alignment at H-paniculata_contig10517:2000..2965- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10517.338.1 ID=mRNA_H-paniculata_contig10517.338.1|Name=mRNA_H-paniculata_contig10517.338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=966bp|location=Sequence derived from alignment at H-paniculata_contig10517:2000..2965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10517:2000..2965- >mRNA_H-paniculata_contig10517.338.1 ID=mRNA_H-paniculata_contig10517.338.1|Name=mRNA_H-paniculata_contig10517.338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig10517:2000..2965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |