mRNA_H-paniculata_contig10352.236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10352.236.1
Unique NamemRNA_H-paniculata_contig10352.236.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10352.236.1 vs. uniprot
Match: A0A6H5KJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ42_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.570e-51
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = 2 
Query: 1277 ASRNRRPQRTMAEVERHKRNRAERLRAYGCSRTLYPRIQP--------EPFSGASDILEEVETKQWVDTLRVSASLRGESLMGVHTVSNAQHQTTAHLGEQQAEARASRVANVSKMEGPDGLLHCAVLKGDHPLAARAAQFLVDKLGANVNSRDEWGR 1726
            A  +RR  +T AE+ERHKRNRAERLRAYGC R+LYPRI P        + +S  +   EE+ET++WV+TLRVSA++RGESLM   + S A+H T   LG++Q+EARASR A+VS MEGPDGLLHCAVL+GDH LAARAAQFLVDK G+NVNSRDEWGR
Sbjct:  340 AGSSRRAAQTKAEIERHKRNRAERLRAYGCQRSLYPRIVPGRVVEGGLDNYSTPARETEEMETEEWVNTLRVSAAIRGESLMAACSQSFAEHTTNTLLGDKQSEARASRTADVSVMEGPDGLLHCAVLRGDHALAARAAQFLVDKRGSNVNSRDEWGR 497
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BLAST of mRNA_H-paniculata_contig10352.236.1 vs. uniprot
Match: D8LH02_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH02_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.240e-35
Identity = 70/98 (71.43%), Postives = 86/98 (87.76%), Query Frame = 2 
Query: 1433 VETKQWVDTLRVSASLRGESLMGVHTVSNAQHQTTAHLGEQQAEARASRVANVSKMEGPDGLLHCAVLKGDHPLAARAAQFLVDKLGANVNSRDEWGR 1726
            +ET++WV+TLRVSA++RGESLM   + S A+H+T   LG++++EARASR A+VS MEGPDGLLHCAVL+GDH LAARAAQFLVDK G+NVNSRDEWGR
Sbjct:    1 METEEWVNTLRVSAAIRGESLMAACSQSFAEHKTNTLLGDKKSEARASRTADVSVMEGPDGLLHCAVLRGDHALAARAAQFLVDKRGSNVNSRDEWGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10352.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ42_9PHAE4.570e-5165.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH02_ECTSI1.240e-3571.43Ankyrin domain protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10352contigH-paniculata_contig10352:4230..5958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog2880.D8LH02
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-14_001250.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1729
Cds size1560
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928738.3316293-UTR-H-paniculata_contig10352:4229..43981622928738.3316293-UTR-H-paniculata_contig10352:4229..4398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10352 4230..4398 +
1691480601.496593-UTR-H-paniculata_contig10352:4229..43981691480601.496593-UTR-H-paniculata_contig10352:4229..4398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10352 4230..4398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928738.3466246-CDS-H-paniculata_contig10352:4398..59581622928738.3466246-CDS-H-paniculata_contig10352:4398..5958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10352 4399..5958 +
1691480601.507415-CDS-H-paniculata_contig10352:4398..59581691480601.507415-CDS-H-paniculata_contig10352:4398..5958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10352 4399..5958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10352.236.1prot_H-paniculata_contig10352.236.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10352 4399..5958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10352.236.1

>prot_H-paniculata_contig10352.236.1 ID=prot_H-paniculata_contig10352.236.1|Name=mRNA_H-paniculata_contig10352.236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=520bp
MLMTREAPAAAPAVGSRTGNSPRLALPLPQQNGHGQVRVPMATLTAAVSQ
TRIRRPQSIRFVPAMRTMTSFFDETFLDMDYDEAVESERDEEDEKTGMPL
PLTEIEVWARYGFVDERFVRRRRTGGPTERSSTDGTSGLADRPAQLHRPR
RRSDPTVGRRRRGEDASRRRDLPDPYSNSNDVGDSRASRTGANILGRGQR
QPQQHAGGASPASPNVGTSTPTTVILTPPNNGSSKNIVDASANTTADTIQ
SGFRRDSLAASFAAVSASQRSSRGNVGGEGSISASAPGMQRELEAKEQQN
GEAKREERDTGSVEGNLGSDTATRRGENDHLNSTEWQQHGNNTNTGTSGV
RSANSSTSSMGNGGGQVRPASRNRRPQRTMAEVERHKRNRAERLRAYGCS
RTLYPRIQPEPFSGASDILEEVETKQWVDTLRVSASLRGESLMGVHTVSN
AQHQTTAHLGEQQAEARASRVANVSKMEGPDGLLHCAVLKGDHPLAARAA
QFLVDKLGANVNSRDEWGR*
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mRNA from alignment at H-paniculata_contig10352:4230..5958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10352.236.1 ID=mRNA_H-paniculata_contig10352.236.1|Name=mRNA_H-paniculata_contig10352.236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1729bp|location=Sequence derived from alignment at H-paniculata_contig10352:4230..5958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAGTTTCAGTTTCGAAGAAATCGCCCAGCAGGACAGTAGATCGACTT
AACATTGACGAGAGAAACCAAGTGGCGTGTGAGAGGGCGTGGGCGTTTCT
TCTTTGCAACTGTCGGCAGGGAGCTGTAAGAATAAGCGTGAAGGTAAAGG
TTGAGTTGCTACGCAGGAGATGTTGATGACACGTGAGGCGCCCGCGGCGG
CGCCAGCGGTGGGCAGCCGCACCGGAAACTCTCCGAGGCTGGCCCTGCCT
CTTCCCCAGCAGAATGGCCACGGCCAGGTGCGGGTGCCCATGGCAACCCT
CACAGCGGCTGTGTCGCAAACGCGGATCAGGCGCCCGCAGTCCATCCGGT
TCGTGCCAGCCATGCGCACGATGACTTCTTTCTTCGACGAGACCTTCCTA
GACATGGATTACGATGAGGCAGTCGAATCCGAAAGAGACGAGGAAGACGA
GAAAACCGGAATGCCGTTGCCGCTGACCGAGATCGAGGTGTGGGCGAGGT
ACGGCTTCGTGGACGAGAGATTCGTGAGAAGGCGACGCACGGGGGGACCA
ACGGAACGCAGCAGCACGGATGGGACGAGCGGTTTGGCCGATCGGCCTGC
CCAACTCCACCGGCCAAGGCGCAGGAGCGATCCCACCGTGGGGAGGCGAC
GACGAGGCGAGGATGCGTCGAGGCGAAGGGATTTACCTGATCCCTATTCC
AACAGCAATGATGTAGGTGACAGCAGAGCCAGTCGCACAGGTGCTAATAT
TTTGGGGAGAGGGCAAAGGCAACCGCAGCAGCATGCCGGTGGAGCATCCC
CTGCTTCGCCCAACGTTGGCACGAGCACCCCAACCACCGTAATCCTTACG
CCGCCCAACAATGGCTCATCCAAAAATATCGTTGACGCAAGCGCGAATAC
GACTGCTGACACCATCCAGAGCGGCTTTCGGAGAGACAGCCTAGCAGCGT
CTTTCGCGGCAGTGTCTGCGTCGCAACGATCATCTCGTGGTAACGTCGGT
GGGGAAGGATCAATATCGGCGTCAGCACCCGGGATGCAGCGAGAGCTGGA
AGCGAAGGAACAACAGAACGGGGAGGCTAAGCGGGAGGAGCGAGACACCG
GGTCGGTCGAGGGAAACCTCGGTTCAGACACGGCCACGCGCAGAGGAGAA
AACGACCACCTGAATTCCACGGAATGGCAGCAACATGGCAACAACACCAA
CACCGGCACGTCGGGGGTAAGATCAGCAAATTCAAGCACGAGCTCGATGG
GGAACGGAGGAGGGCAGGTGCGGCCGGCGAGCCGTAATCGCCGGCCGCAG
CGAACGATGGCCGAAGTGGAGAGGCACAAGCGCAACCGCGCGGAGCGTTT
GCGTGCGTACGGCTGCTCGAGGACGCTCTACCCCCGCATACAGCCTGAGC
CCTTTTCAGGTGCCAGTGACATCCTGGAGGAGGTGGAGACGAAGCAATGG
GTCGACACGCTGAGGGTCAGCGCTAGCCTGCGCGGAGAATCGTTGATGGG
CGTGCACACTGTGAGCAATGCGCAGCATCAGACCACCGCGCATCTGGGGG
AGCAGCAGGCGGAGGCGAGGGCATCGAGGGTAGCTAATGTGTCGAAGATG
GAGGGACCCGACGGACTGTTGCACTGTGCAGTGCTCAAGGGTGATCACCC
GCTGGCCGCCAGGGCGGCCCAGTTTCTGGTGGACAAGCTAGGGGCGAATG
TCAATAGCCGTGACGAGTGGGGAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10352:4230..5958+

>mRNA_H-paniculata_contig10352.236.1 ID=mRNA_H-paniculata_contig10352.236.1|Name=mRNA_H-paniculata_contig10352.236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3120bp|location=Sequence derived from alignment at H-paniculata_contig10352:4230..5958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATGACACGTGAGGCGCCCGCGGCGGCGCCAGCGGTGGGCAGCCG
CACCGGAAACTCTCCGAGGCTGGCCCTGCCTCTTCCCCAGCAGAATGGCC
ACGGCCAGGTGCGGGTGCCCATGGCAACCCTCACAGCGGCTGTGTCGCAA
ACGCGGATCAGGCGCCCGCAGTCCATCCGGTTCGTGCCAGCCATGCGCAC
GATGACTTCTTTCTTCGACGAGACCTTCCTAGACATGGATTACGATGAGG
CAGTCGAATCCGAAAGAGACGAGGAAGACGAGAAAACCGGAATGCCGTTG
CCGCTGACCGAGATCGAGGTGTGGGCGAGGTACGGCTTCGTGGACGAGAG
ATTCGTGAGAAGGCGACGCACGGGGGGACCAACGGAACGCAGCAGCACGG
ATGGGACGAGCGGTTTGGCCGATCGGCCTGCCCAACTCCACCGGCCAAGG
CGCAGGAGCGATCCCACCGTGGGGAGGCGACGACGAGGCGAGGATGCGTC
GAGGCGAAGGGATTTACCTGATCCCTATTCCAACAGCAATGATGTAGGTG
ACAGCAGAGCCAGTCGCACAGGTGCTAATATTTTGGGGAGAGGGCAAAGG
CAACCGCAGCAGCATGCCGGTGGAGCATCCCCTGCTTCGCCCAACGTTGG
CACGAGCACCCCAACCACCGTAATCCTTACGCCGCCCAACAATGGCTCAT
CCAAAAATATCGTTGACGCAAGCGCGAATACGACTGCTGACACCATCCAG
AGCGGCTTTCGGAGAGACAGCCTAGCAGCGTCTTTCGCGGCAGTGTCTGC
GTCGCAACGATCATCTCGTGGTAACGTCGGTGGGGAAGGATCAATATCGG
CGTCAGCACCCGGGATGCAGCGAGAGCTGGAAGCGAAGGAACAACAGAAC
GGGGAGGCTAAGCGGGAGGAGCGAGACACCGGGTCGGTCGAGGGAAACCT
CGGTTCAGACACGGCCACGCGCAGAGGAGAAAACGACCACCTGAATTCCA
CGGAATGGCAGCAACATGGCAACAACACCAACACCGGCACGTCGGGGGTA
AGATCAGCAAATTCAAGCACGAGCTCGATGGGGAACGGAGGAGGGCAGGT
GCGGCCGGCGAGCCGTAATCGCCGGCCGCAGCGAACGATGGCCGAAGTGG
AGAGGCACAAGCGCAACCGCGCGGAGCGTTTGCGTGCGTACGGCTGCTCG
AGGACGCTCTACCCCCGCATACAGCCTGAGCCCTTTTCAGGTGCCAGTGA
CATCCTGGAGGAGGTGGAGACGAAGCAATGGGTCGACACGCTGAGGGTCA
GCGCTAGCCTGCGCGGAGAATCGTTGATGGGCGTGCACACTGTGAGCAAT
GCGCAGCATCAGACCACCGCGCATCTGGGGGAGCAGCAGGCGGAGGCGAG
GGCATCGAGGGTAGCTAATGTGTCGAAGATGGAGGGACCCGACGGACTGT
TGCACTGTGCAGTGCTCAAGGGTGATCACCCGCTGGCCGCCAGGGCGGCC
CAGTTTCTGGTGGACAAGCTAGGGGCGAATGTCAATAGCCGTGACGAGTG
GGGAAGGTGAATGTTGATGACACGTGAGGCGCCCGCGGCGGCGCCAGCGG
TGGGCAGCCGCACCGGAAACTCTCCGAGGCTGGCCCTGCCTCTTCCCCAG
CAGAATGGCCACGGCCAGGTGCGGGTGCCCATGGCAACCCTCACAGCGGC
TGTGTCGCAAACGCGGATCAGGCGCCCGCAGTCCATCCGGTTCGTGCCAG
CCATGCGCACGATGACTTCTTTCTTCGACGAGACCTTCCTAGACATGGAT
TACGATGAGGCAGTCGAATCCGAAAGAGACGAGGAAGACGAGAAAACCGG
AATGCCGTTGCCGCTGACCGAGATCGAGGTGTGGGCGAGGTACGGCTTCG
TGGACGAGAGATTCGTGAGAAGGCGACGCACGGGGGGACCAACGGAACGC
AGCAGCACGGATGGGACGAGCGGTTTGGCCGATCGGCCTGCCCAACTCCA
CCGGCCAAGGCGCAGGAGCGATCCCACCGTGGGGAGGCGACGACGAGGCG
AGGATGCGTCGAGGCGAAGGGATTTACCTGATCCCTATTCCAACAGCAAT
GATGTAGGTGACAGCAGAGCCAGTCGCACAGGTGCTAATATTTTGGGGAG
AGGGCAAAGGCAACCGCAGCAGCATGCCGGTGGAGCATCCCCTGCTTCGC
CCAACGTTGGCACGAGCACCCCAACCACCGTAATCCTTACGCCGCCCAAC
AATGGCTCATCCAAAAATATCGTTGACGCAAGCGCGAATACGACTGCTGA
CACCATCCAGAGCGGCTTTCGGAGAGACAGCCTAGCAGCGTCTTTCGCGG
CAGTGTCTGCGTCGCAACGATCATCTCGTGGTAACGTCGGTGGGGAAGGA
TCAATATCGGCGTCAGCACCCGGGATGCAGCGAGAGCTGGAAGCGAAGGA
ACAACAGAACGGGGAGGCTAAGCGGGAGGAGCGAGACACCGGGTCGGTCG
AGGGAAACCTCGGTTCAGACACGGCCACGCGCAGAGGAGAAAACGACCAC
CTGAATTCCACGGAATGGCAGCAACATGGCAACAACACCAACACCGGCAC
GTCGGGGGTAAGATCAGCAAATTCAAGCACGAGCTCGATGGGGAACGGAG
GAGGGCAGGTGCGGCCGGCGAGCCGTAATCGCCGGCCGCAGCGAACGATG
GCCGAAGTGGAGAGGCACAAGCGCAACCGCGCGGAGCGTTTGCGTGCGTA
CGGCTGCTCGAGGACGCTCTACCCCCGCATACAGCCTGAGCCCTTTTCAG
GTGCCAGTGACATCCTGGAGGAGGTGGAGACGAAGCAATGGGTCGACACG
CTGAGGGTCAGCGCTAGCCTGCGCGGAGAATCGTTGATGGGCGTGCACAC
TGTGAGCAATGCGCAGCATCAGACCACCGCGCATCTGGGGGAGCAGCAGG
CGGAGGCGAGGGCATCGAGGGTAGCTAATGTGTCGAAGATGGAGGGACCC
GACGGACTGTTGCACTGTGCAGTGCTCAAGGGTGATCACCCGCTGGCCGC
CAGGGCGGCCCAGTTTCTGGTGGACAAGCTAGGGGCGAATGTCAATAGCC
GTGACGAGTGGGGAAGGTGA
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