mRNA_H-paniculata_contig10346.229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10346.229.1
Unique NamemRNA_H-paniculata_contig10346.229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: D8LFH3_ECTSI (Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.960e-27
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 KVLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVERDTAQRV 171
            +VLD+YFGP GIEY++GRIPMGSCDFS EQYSFD+VPGDYNLTHFD GVE+DTAQR+
Sbjct:  173 QVLDAYFGPNGIEYSVGRIPMGSCDFSVEQYSFDEVPGDYNLTHFDDGVEKDTAQRI 229
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: A0A835Z8L7_9STRA (Glucosylceramidase, family GH30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.380e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVERDTAQRV 171
            V+D+YFGP GI YT+GRIPMGSCDFS EQY++DDVPGDY++ HFD  +E D  QRV
Sbjct:   69 VIDAYFGPDGIGYTIGRIPMGSCDFSVEQYNYDDVPGDYSMEHFDNNIEYDQKQRV 124
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: UPI00148ACB47 (lysosomal acid glucosylceramidase n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148ACB47)

HSP 1 Score: 81.3 bits (199), Expect = 7.240e-17
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            V+DSY+GPQGIEY++GR+P+GSCDFST  YS+DDV GD+NLT F    E
Sbjct:  126 VIDSYYGPQGIEYSVGRVPIGSCDFSTHPYSYDDVDGDFNLTKFQLAKE 174
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: K1PNS1_CRAGI (Glucosylceramidase n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1PNS1_CRAGI)

HSP 1 Score: 81.3 bits (199), Expect = 1.410e-16
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            V+DSY+GPQGIEY++GR+P+GSCDFST  YS+DDV GD+NLT F    E
Sbjct:  263 VIDSYYGPQGIEYSVGRVPIGSCDFSTHPYSYDDVDGDFNLTKFQLAKE 311
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: UPI001425A5C3 (lysosomal acid glucosylceramidase-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A5C3)

HSP 1 Score: 79.3 bits (194), Expect = 6.650e-16
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            VL+SYF   GIEY MGRIPM SCDFST  YS+DDVPGD+NLT+F   +E
Sbjct:  126 VLNSYFSKNGIEYNMGRIPMASCDFSTRNYSYDDVPGDFNLTNFALAME 174
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: A0A210PEG6_MIZYE (Glucosylceramidase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PEG6_MIZYE)

HSP 1 Score: 77.8 bits (190), Expect = 2.300e-15
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            +L SYF PQGIEY +GRIPM SCDFST  YS+DDVPGD NLT F    E
Sbjct:  126 LLKSYFSPQGIEYNLGRIPMASCDFSTRLYSYDDVPGDLNLTKFSLTTE 174
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: UPI001B888CC5 (LOW QUALITY PROTEIN: lysosomal acid glucosylceramidase-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888CC5)

HSP 1 Score: 76.6 bits (187), Expect = 5.880e-15
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            +L SY+ P GIEYT+GRIPM SCDFST  YS+DD P D+NLTHF    E
Sbjct:  124 LLKSYYSPDGIEYTVGRIPMASCDFSTHPYSYDDTPMDFNLTHFSLAPE 172
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: A0A7S2N014_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2N014_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 6.040e-15
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 KVLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVERDTAQRV 171
            ++L+ YFGP GI YT GR+P+ SCDFST  YSFDD  GD  L  FD GV+RD    +
Sbjct:   65 ELLEKYFGPDGIGYTTGRVPINSCDFSTGTYSFDDTEGDSELQQFDHGVKRDAKATI 121
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: A0A077Z084_TRITR (Glucosylceramidase n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077Z084_TRITR)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 KVLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            ++L+SY+ P GIEYTMGRIPM SCDFST  YS+DDV GD+NL+ F    E
Sbjct:  144 QLLNSYYAPTGIEYTMGRIPMASCDFSTRLYSYDDVDGDFNLSEFQLAQE 193
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BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Match: UPI001458CCFD (lysosomal acid glucosylceramidase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458CCFD)

HSP 1 Score: 75.5 bits (184), Expect = 1.500e-14
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    4 VLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE 150
            +L SYF  QGIEY +GRIPM SCDFST  YS+DDVPGD NLT F    E
Sbjct:  122 LLKSYFSTQGIEYNLGRIPMASCDFSTRLYSYDDVPGDLNLTKFSLATE 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10346.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH3_ECTSI3.960e-2782.46Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus... [more]
A0A835Z8L7_9STRA1.380e-2169.64Glucosylceramidase, family GH30 n=1 Tax=Tribonema ... [more]
UPI00148ACB477.240e-1767.35lysosomal acid glucosylceramidase n=1 Tax=Crassost... [more]
K1PNS1_CRAGI1.410e-1667.35Glucosylceramidase n=1 Tax=Crassostrea gigas TaxID... [more]
UPI001425A5C36.650e-1669.39lysosomal acid glucosylceramidase-like n=1 Tax=Ann... [more]
A0A210PEG6_MIZYE2.300e-1569.39Glucosylceramidase n=1 Tax=Mizuhopecten yessoensis... [more]
UPI001B888CC55.880e-1565.31LOW QUALITY PROTEIN: lysosomal acid glucosylcerami... [more]
A0A7S2N014_9DINO6.040e-1556.14Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A077Z084_TRITR1.100e-1464.00Glucosylceramidase n=1 Tax=Trichuris trichiura Tax... [more]
UPI001458CCFD1.500e-1467.35lysosomal acid glucosylceramidase-like n=1 Tax=Pec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10346contigH-paniculata_contig10346:522..692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D8LFH3
KEGG rclassRC00059,RC00451
KEGG koko:K01201
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EggNOG free text desc.glucosylceramidase activity
EggNOG OGsCOG5520@1,KOG2566@2759
EC3.2.1.45
COG Functional cat.M
CAZyGH30
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928737.3401792-CDS-H-paniculata_contig10346:521..6921622928737.3401792-CDS-H-paniculata_contig10346:521..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10346 522..692 -
1691480600.9975052-CDS-H-paniculata_contig10346:521..6921691480600.9975052-CDS-H-paniculata_contig10346:521..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10346 522..692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10346.229.1prot_H-paniculata_contig10346.229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10346 522..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10346.229.1

>prot_H-paniculata_contig10346.229.1 ID=prot_H-paniculata_contig10346.229.1|Name=mRNA_H-paniculata_contig10346.229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
KVLDSYFGPQGIEYTMGRIPMGSCDFSTEQYSFDDVPGDYNLTHFDTGVE
RDTAQRV
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mRNA from alignment at H-paniculata_contig10346:522..692-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10346.229.1 ID=mRNA_H-paniculata_contig10346.229.1|Name=mRNA_H-paniculata_contig10346.229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig10346:522..692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGCTCGACTCATACTTCGGGCCGCAGGGGATAGAGTACACCATGGG
CCGGATCCCTATGGGCAGCTGCGACTTCAGCACAGAGCAGTACAGCTTCG
ACGACGTGCCGGGTGACTACAACCTTACGCATTTCGATACTGGTGTGGAG
AGGGATACGGCGCAGAGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10346:522..692-

>mRNA_H-paniculata_contig10346.229.1 ID=mRNA_H-paniculata_contig10346.229.1|Name=mRNA_H-paniculata_contig10346.229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig10346:522..692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGCTCGACTCATACTTCGGGCCGCAGGGGATAGAGTACACCATGGG
CCGGATCCCTATGGGCAGCTGCGACTTCAGCACAGAGCAGTACAGCTTCG
ACGACGTGCCGGGTGACTACAACCTTACGCATTTCGATACTGGTGTGGAG
AGGGATACGGCGCAGAGGGTGAAGGTGCTCGACTCATACTTCGGGCCGCA
GGGGATAGAGTACACCATGGGCCGGATCCCTATGGGCAGCTGCGACTTCA
GCACAGAGCAGTACAGCTTCGACGACGTGCCGGGTGACTACAACCTTACG
CATTTCGATACTGGTGTGGAGAGGGATACGGCGCAGAGGGTG
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