mRNA_H-paniculata_contig10335.221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10335.221.1
Unique NamemRNA_H-paniculata_contig10335.221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 123 bits (308), Expect = 3.500e-30
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVK 354
            L GGA SW S+KQ   A SSTEAEY+AA    KE   LR  LG IG  C+ +  L  DN+ A+ +++    H RTKHI VR+H +RE V+ G + L+YV TGDQ+AD+LTKGL + K
Sbjct: 1008 LAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 110 bits (275), Expect = 3.030e-28
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGL 342
            L G A  W SR+Q  VA S+ EAEYVA  E  +E V L+ LL  +G   +    L+ DN+ AI L++  G H RTKHI +RWH IRE +++G++ L YV T  Q+ADI TK L
Sbjct:   39 LGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 151          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: H3G6B1_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6B1_PHYRM)

HSP 1 Score: 108 bits (270), Expect = 4.450e-28
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIG-FGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVKF 357
            +NGG  SW S+KQ+ VA SSTEAEY+A  E  KE V L+  L  +G      +  ++EDN+ +I L+K    H RTKHI +R+H +RE V++G + L+YV T D LAD++TK ++ V+F
Sbjct:    2 MNGGCISWRSKKQRTVALSSTEAEYMALSEATKEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQF 120          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 111 bits (277), Expect = 6.160e-28
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVK 354
            L GGA SW S+KQ   A SSTEAEY+AA    KE   L   L  IG  C+ +  L  DN+ A+ ++     H +TKHI VR+H +RE V+ G + L+YV  GDQ+AD+LTKGL + K
Sbjct:  104 LAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAK 220          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A427YPN6_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YPN6_9TREE)

HSP 1 Score: 110 bits (275), Expect = 6.900e-28
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGL 342
            L G A  W SR+Q  VA S+ EAEYVA  E  +E V L+ LL  +G   +    L+ DN+ AI L++  G H RTKHI +RWH IRE +++G++ L YV T  Q+ADI TK L
Sbjct:    2 LGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 114          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 113 bits (282), Expect = 8.140e-28
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVK 354
            L GGA SW S+KQ   A SSTEAEY+ A    KE   LR  L  IG  C+ +  L  DN+ A+ ++     H RTKHI +R+H +RE V+ G + L+YV TGDQ+AD+L KGL + K
Sbjct:  202 LAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAK 318          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: H3GB65_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB65_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 9.920e-28
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIG-FGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVKF 357
            +NGG  SW S+KQ+ VA SSTEAEY+A  E  +E V L+  L  +G      +  ++EDN+ +I L+K    H RTKHI +R+H +RE V++G + L+YV T D LADI+TK ++ V+F
Sbjct:    1 MNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADIMTKAITAVQF 119          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 111 bits (277), Expect = 1.820e-27
Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 RLNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIG---FGCRRSKT----LFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVK 354
            +L GGA SWCSRKQQ +A SSTEAEYVA     KE + L  LL  +    F    S+     +  DN+ A+ L+K S  H RTKHI VR H IR+ ++ G L ++YV TGDQ+AD+LTK L+R K
Sbjct:  149 KLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREK 273          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: H3HA07_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA07_PHYRM)

HSP 1 Score: 105 bits (263), Expect = 5.580e-27
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIG-FGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTKGLSRVKF 357
            +NGG  SW S+KQ+ VA SSTEAEY+A  +  +E V L+  L  +G      +  ++EDN+ +I L+K    H RTKHI +R+H +RE V++G + L+YV T D LAD++TK ++ V+F
Sbjct:    1 MNGGCISWRSKKQRTVALSSTEAEYMALSDATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQF 119          
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 110 bits (276), Expect = 7.490e-27
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 LNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGCRRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYVQTGDQLADILTK 336
              GGA SW S+KQ  V  S+TEAEYVAA     + V +R++L  IGFG      LF DN  AI LSK    H R+KHI VR+H +RE V EGI++ +Y  T +QLADI+TK
Sbjct:  213 FGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTK 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10335.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZY34_9AGAM3.500e-3051.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A427XXX1_9TREE3.030e-2847.79Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
H3G6B1_PHYRM4.450e-2846.22Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A4Z0A7X3_9AGAM6.160e-2847.86Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A427YPN6_9TREE6.900e-2847.79Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A4Y9ZSL8_9AGAM8.140e-2847.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB65_PHYRM9.920e-2846.22Uncharacterized protein n=4 Tax=Phytophthora ramor... [more]
A0A060SU91_PYCCI1.820e-2749.60Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
H3HA07_PHYRM5.580e-2744.54Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
UPI0006A737CF7.490e-2751.35uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10335contigH-paniculata_contig10335:8338..8697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.3
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.1455076-CDS-H-paniculata_contig10335:8337..86971622928736.1455076-CDS-H-paniculata_contig10335:8337..8697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10335 8338..8697 -
1691480600.4310873-CDS-H-paniculata_contig10335:8337..86971691480600.4310873-CDS-H-paniculata_contig10335:8337..8697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10335 8338..8697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10335.221.1prot_H-paniculata_contig10335.221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10335 8338..8697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10335.221.1

>prot_H-paniculata_contig10335.221.1 ID=prot_H-paniculata_contig10335.221.1|Name=mRNA_H-paniculata_contig10335.221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
RLNGGARSWCSRKQQFVACSSTEAEYVAAGETGKETVHLRDLLGSIGFGC
RRSKTLFEDNKRAINLSKGSGAHCRTKHIRVRWHGIREWVQEGILALKYV
QTGDQLADILTKGLSRVKF*
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mRNA from alignment at H-paniculata_contig10335:8338..8697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10335.221.1 ID=mRNA_H-paniculata_contig10335.221.1|Name=mRNA_H-paniculata_contig10335.221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig10335:8338..8697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCTTAACGGTGGTGCGAGAAGTTGGTGCTCTAGGAAGCAACAGTTTGT CGCGTGCTCCAGTACGGAGGCAGAGTACGTTGCTGCAGGAGAAACGGGAA AGGAGACGGTACATCTTAGGGATTTACTAGGATCGATAGGTTTCGGATGC AGGAGAAGCAAGACACTGTTTGAGGACAATAAACGAGCTATCAATCTCAG TAAGGGATCTGGCGCGCACTGCAGGACAAAGCACATCAGAGTGCGCTGGC ACGGAATTCGAGAATGGGTTCAGGAAGGAATATTGGCGTTGAAGTATGTA CAGACCGGCGACCAACTTGCTGACATTTTAACGAAAGGACTGAGCAGAGT AAAGTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10335:8338..8697-

>mRNA_H-paniculata_contig10335.221.1 ID=mRNA_H-paniculata_contig10335.221.1|Name=mRNA_H-paniculata_contig10335.221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig10335:8338..8697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCTTAACGGTGGTGCGAGAAGTTGGTGCTCTAGGAAGCAACAGTTTGT
CGCGTGCTCCAGTACGGAGGCAGAGTACGTTGCTGCAGGAGAAACGGGAA
AGGAGACGGTACATCTTAGGGATTTACTAGGATCGATAGGTTTCGGATGC
AGGAGAAGCAAGACACTGTTTGAGGACAATAAACGAGCTATCAATCTCAG
TAAGGGATCTGGCGCGCACTGCAGGACAAAGCACATCAGAGTGCGCTGGC
ACGGAATTCGAGAATGGGTTCAGGAAGGAATATTGGCGTTGAAGTATGTA
CAGACCGGCGACCAACTTGCTGACATTTTAACGAAAGGACTGAGCAGAGT
AAAGTTTTAGCGTCTTAACGGTGGTGCGAGAAGTTGGTGCTCTAGGAAGC
AACAGTTTGTCGCGTGCTCCAGTACGGAGGCAGAGTACGTTGCTGCAGGA
GAAACGGGAAAGGAGACGGTACATCTTAGGGATTTACTAGGATCGATAGG
TTTCGGATGCAGGAGAAGCAAGACACTGTTTGAGGACAATAAACGAGCTA
TCAATCTCAGTAAGGGATCTGGCGCGCACTGCAGGACAAAGCACATCAGA
GTGCGCTGGCACGGAATTCGAGAATGGGTTCAGGAAGGAATATTGGCGTT
GAAGTATGTACAGACCGGCGACCAACTTGCTGACATTTTAACGAAAGGAC
TGAGCAGAGTAAAGTTTTAG
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