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Homology
BLAST of mRNA_H-paniculata_contig10332.219.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.250e-38 Identity = 90/179 (50.28%), Postives = 112/179 (62.57%), Query Frame = 1
Query: 376 LDDSDDASPAADDEDMYASLRKRLEELEKSAPDGGGAPRQQLYDSRAASRPSAAREQTRITKPKTSPQTPWRSLALLTIQSVGIISVAITVGTVVLYWLAGDFFVHLGPREYPGALSSRSSLLNSSPTIERTVGEEAGANEEAVVGGGGED---TARRLVERRGTRDAFHFEGFPEVGS 903
+D SDD S D +MYASLRKRLEELEK AP++Q+ + A+ ARE+ T PK SP+ RS ALLTIQSVG+IS A++ GT+ LYWLAG FVHLGPREYPG++SSR +++P IER E G GG + T RR + TR+AF FEGFP+VG
Sbjct: 1 MDPSDDTSEG--DAEMYASLRKRLEELEKQVGTSAPAPQEQVQEPAVAANNKGAREREWFTIPKESPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGA-STAPGIERIAAGEDG-------NGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGG 169
BLAST of mRNA_H-paniculata_contig10332.219.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.740e-34 Identity = 90/183 (49.18%), Postives = 112/183 (61.20%), Query Frame = 1
Query: 370 SNLDDSDDASPAADDEDMYASLRKRLEELEK----SAPDGGGAPRQQLYDSRAASRPSAAREQTRITKPKTSPQTPWRSLALLTIQSVGIISVAITVGTVVLYWLAGDFFVHLGPREYPGALSSRSSLLNSSPTIER-TVGEEAGANEEAVVGGGGEDTARRLVERRGTRDAFHFEGFPEVGS 903
+N+D SDD S D +MYASLRKRLEELE SAP A +Q + + ARE+ T PK +P+ RSLALLTIQSVG+IS A++ GT+ LYWLAG FVHLGPREYPG++SSR S ++P ER VGE+ + V T R + TR+AF FEGFP+VG
Sbjct: 75 ANMDPSDDTSEG--DAEMYASLRKRLEELENRVETSAP---AAQEEQGQEPAVTANNRGAREREWFTIPKEAPEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSA-GTAPGFERIVVGEDENGGAQQVP-----QTQGRAMGGSSTREAFQFEGFPDVGG 246
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-21_003820.1 |
Exons | 4 |
Model size | 921 |
Cds size | 921 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10332.219.1 >prot_H-paniculata_contig10332.219.1 ID=prot_H-paniculata_contig10332.219.1|Name=mRNA_H-paniculata_contig10332.219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
CSDKRIALLSCSPLFPPKRFWQPIITATSSVLAWHTPKMRRRSLFLAFAA SLPIQGICFIDSPLFSRYPRLQQQQRVVRQHGHQHRHGTGVAPAPAISWG WPYVVRISCRKRNRRDGGVVRWRSNLDDSDDASPAADDEDMYASLRKRLE ELEKSAPDGGGAPRQQLYDSRAASRPSAAREQTRITKPKTSPQTPWRSLA LLTIQSVGIISVAITVGTVVLYWLAGDFFVHLGPREYPGALSSRSSLLNS SPTIERTVGEEAGANEEAVVGGGGEDTARRLVERRGTRDAFHFEGFPEVG SVRPDF* back to topmRNA from alignment at H-paniculata_contig10332:1558..7650+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10332.219.1 ID=mRNA_H-paniculata_contig10332.219.1|Name=mRNA_H-paniculata_contig10332.219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6093bp|location=Sequence derived from alignment at H-paniculata_contig10332:1558..7650+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCTCTGACAAGCGGATCGCATTGCTCTCTTGCAGCCCCCTCTTCCCCCC
CAAGAGATTTTGGCAGCCAATCATCACAGCCACTTCTAGTGTACTCGCCT
GGCATACTCCCAAAATGCGAAGACGCTCGCTTTTTCTCGCGTTCGCAGCC
TCTTTGCCCATACAAGGCATCTGCTTCATCGATTCCCCTCTCTTTTCTCG
GTATCCTCGACTGCAACAGCAACAGCGAGTAGTACGTCAACATGGACACC
AACATCGGCATGGTACGGGGGTGGCGCCGGCGCCGGCTATTTCATGGGGG
TGGCCCTACGTAGTTCGGATTTCCTGCAGGAAACGCAACCGAAGGGATGG
TGGTGTTGTGAGGTGGCGCTCTAACTTGGATGATTCTGATGATGCTTCTC
CAGCTGCAGATGATGAGGATATGTATGCCTCTCTGAGGAAGCGGCTTGAA
GAGCTCGAGAAGTCTGCTCCTGATGGTGGTGGTGGTGGTGGTGGTGGTGG
TGGTGATGGTGGTGCTACCATCTCCATGCCCCCGCCCTCACAGATAGAAT
TGGACAGAGAGAAGGACGAGAGGGCTGAACGCATACTTGCAAAGTGAGTT
TTGTGAACGTACGCAGGTGAAAGAGTTAAGAGTGGGCACCAATCAGCCGA
AATGAAAACTATGCTGCTCTTTAGGTGGGTTCATTTTTGTTTTGAGAGCA
ATCACAATCATACCATGTTCCAAGTAATTGCGCAGAGTATAGTGTCGCTG
GCAGTTTCAACTTGGGCTTGAAGAGAGCACCATACAGTCGGTCAGTACCA
ACACATGAAACCGAAACACTGCAGCAAGTCAGGTCTACTGACATATTTAT
CAAGACTATATATATAGCTACTACTAAATACTCCAGAGTAGCAGTTTCCG
GGATGACCGCGATTGTGCCTTTCTTTGAAAGGCGGTTCACGGAAGGTATC
ATCTCTCGAGTTATCTCGACTTTTGGACGTGCAGTGAGTAGAGGCATTAT
GGAGTATTGATCATGGAGTTACTTGTTCTCAGAGTGTGTTAACCTCTGGA
GTGTTCACCCTTTGGAAACTGAACCTCGTAACGGTGAAAATATACAGTTG
CTAACGACCAGTCGGGATAATGGATAGTGACGAATACATCTACAGAATGC
TTAATCAGCTGGCTAGTGCATCTCAGGTGCAAAAGCGGGTTGTTGATTTG
TCGTTGTGGACACTTATCTTGAATTTAGTGAACAGCATAAGCAAGCGACC
ACCTGGCTTGTTTCATGACAACCAACAGTGAACAAAAAGCAAGCGCTGCA
CAGCTGATCAAGAGGGGCGGGCTTAACCCTCGTAGATAGAGGGTTATTTT
TTTCATGGTCCGCGCAAATTTCTTTCAACGATCCAAGGTTACTGCTCAAT
ATAAAAAGTTAGATACCCATTTGTCTTGCCGAGAACAAGAAATACGTTTG
ACATGAATGTTCAACGGAGGAAACTCGTCTCGGCCACACACTCCAAACAC
TTTCAGGTAGAGCAGCATGTGGGCAAGGCCCTAGAGGTTCTCTCCCCTTC
ACGATCGCCCCATAAACAAAAACCCAGCAAGCAAAAACCATCAACCAAGT
AGGATGAAAATTAACAGACAACTGCGTCGTTTTTTAGATTTTGTCGACTG
CTACAGTTTTTCCATGCCTAGCAATGCCTTCGACACTATATTTTGCGAAT
TTGCAATTTTTTGACAGTCACATCATCCATATAATGGGGTCGGCTGTCCT
TCCACCTAGTGCCCAACGTTGTGCTCGAGAAGATGAAATACCACCCTCCT
CATCCAATTCACTCAGTCAGTCACTAGCGTAGTTACTACTGCTGCACTGT
TAGGGGTGCGCCTAAGTCCTGAATTGTCCTGACTAAGGCGGTAATTGTGT
CCTAAAATTTCGCATCGACCACGTATTTTTGCCGGCTTTTTAGAGAGTTT
GGGTCACAAAAGAAAAATTATATAGTTGACGTCACCCCAAAACAAACACA
CACACAACCATGGAGAGACCCATTGCCACCTGATAATATTAAAGGGTGGT
TTGGCGTAGGATGCGCGAAGAAGCGCTGCTGCGGCTGCTGCTGGTGGTGT
TGTGTTAACCACGTTGTCCCCTTTTATCATGTACTGGTTCAGCTCACAGC
TAGACGGTAAAAAGGCCGAGCAAAGCTAAGTTTCGAGTGCTTTGGGACCC
TGAGAATGCTGGCTACAACAACGAGCTACAACCATCACAATATGCCACGG
GGAATATGACTCTACGACCGCCCAACGTAACCCTAACGACCACATGTGTG
AAGAATATTTACGTCCGAAAAGGATGCCCTCTCTCGCACTCTAAATTCGA
GTAGTTTTGGGTGCGTTTTGGGTGTTGATTGACGACTTTAAATTCGAGTA
GTTTGGGCTACTTGTTTGTGTTGATAGGCTATCTTGTCAATAAATACACT
CCTCAGCAAGGTCGTCGATTGGGATGCGGTTTTTTGCGTCGTGTGCGCGA
AAACCACAACTATGGATTATTTTATGAATGTATCAAGTCGTGACGACGAA
GCATCTTCACAGAGAAAGTAGCAAAAAAAAGCACTATTTATTGGGGCGTT
TGGAATTCTTATAACGCGGATTAAATGTCCCACGGGAACAGGCTCTAGAT
TAAGCACATACCCCAGTGTTGGTCGAGTCTCACGAGTCATCTCCTAACCT
GTATCAAGTAGTTCAGCTTACAAGTGCGTGGAAAACCGACACTGAATACA
AATGCTTTGTGGGATGTGGGTGGGATTATCTATCAGGGAATAAACATTTT
TTTTTTTTTATTCGGCGCTTTATCGATGTGGTCGCTGTCGCCAGAATTGG
CTGCAAATAGGGATTAGGCGCACCCCTAACTGTTTCGCCGTTTGCGTTCC
GTGCGTGGACGGCCAACGATTCGGTTCTTAGGTCGTCTGCACACATGATC
CCATTTATTTGACGCATATCTCAAGTTGTGCTCGTATATAACTTCCACTG
TCACGAATAACATCTTGTGCACACAACATGCGCGTGTTTTTGATACTATT
CTGTTTTGTCGAGGATATGCATCGACGGCTCTCCACCGTCACAAACCAGA
GAGGTGTGTGTCCTTCTCTTTATGCATAGTCCAACCGTTTTTCGTAATAG
ACTGTCAATTAATTAATTTCTGCGAAACTTTGAGGTTCCGTTTCGCCACG
TACTCTTCACTCTGTTTCTTGCCGTAGACGCGCCCATTCGTACAATAGAT
GCAAAAACGCTCGGACCAGCAACAGAGCTCCTGTCTTCACATGACTCGAT
ACAACACTTTACAACCAACTCTTTCTAGAAACAAATTAATAGCGAGCACG
TGCGAGTTACACGGGAGCCCTATATTTTCTGCCGCAGCTGCTCCCTCCAC
CATATGCAGGGTCATACATACTCCCTCCGTTCCATAAGTCTGCGACGTTA
TGATTTCTCATTTCTTGTGTAGGCCGTTTCTCTACGAAATCGAAGGGTTT
TTTGGTCATGTATGGCTTGAATTGAACCTATGGATGTCAAACTTCAAGAG
TAATTATTTCGTTCTCGCATATTGTTCCGAAATAGTGCCAAAATTTTCGC
GAGAAGGGGAACTTCAAAAACTGCCCTTTTCGGCTCCATTTTGAGTGGCT
GCGCTGCGTCCCGCGACGGACAAAGCGCCATCCCTATCGTGACATACCTT
CTCAGCACCTCGCCAACAGCTGTACGACTCTCGTGCAGCTTCCAGACCGT
CTGCGGCGCGAGTTTTGCAACCAACATTAGCACTCTGGCGATTTCGGCAT
CTTTTGCCGAGAGCCCATCAGCCTTGGGTAAAACTTGTGAGCTGAGCGAG
GAAGGTTGAAACGCGTTGATCGTACGGTACGCTTTAGCGCTACCTCCCGG
TAAGAAACGGCTTCCGAAAGGCGTTGGGTCAGAGTTGGCGGAGCTGTTTG
GAGTTGGCGTCCAATATCCCAGACAACGTTGGGTGCGTGTACGAGAACAA
CTGGACCACGGCAACACCCTTTCGCTGAGGTGGGCGTTACAAAGCGGGCG
GCCGTCGGGCTTCACACCGACAAAGCACGCCACGATTCAAAGGGCCAAGG
CGCCGAGTTGAATGCTGACCCTCGATCAACTGTTTGCCAAGCTAGCCGAA
GTTGGTCTCGTAGCCGGCAGCTCAAAGCTTCAGCGATGGCTCAAAGAGAT
GGGCGCCACGAGAGTGAAACGGCGCACTACCCCATCTCTGCCGCTGACGC
ACCGAAAGAACCGGGTAAATTTAATTCTGGACCGAGCAGCAAGGAACCCA
TCACTTTCAGGAGCGGCTCCAAACAATTCACATCGACGAAGCGTGGTTTT
ACCTAACTCGCGACAGGGATCGCGTCTGCATATTCCCCGGGGTAGAAAGG
GTGGGGTCCAACAAAGTGCAGCACAAGAGTCATATTACTAAGGTGATGTT
CATTGTCGCCGTTTCGCGTCCAGATCCTTCCCGCGATTTCGACAGCAAGG
TTGGAATCTGACGTGTTTGCGTCATCAAGCAGGCGCAGAGGAATTTGGCC
CGGCGTGAACGGGGGCAGCAATACGAGTTCAACGTGACCATTGACGCCGA
GTGGTACTAGGAGCGGTACAAAGACTCTTTTCTCCCAGCATTGAAGGAAA
AGATGCTGTGGTTGGAAGGTGAAGAAGTGGTCGCGCAGCAGGACAGAGCG
GCCCCCCACTCGGGGAAAGACACGTCGCGGAAGCTCCATGAACCCAGGAG
GGACGGGGGTTGGAACGTCAATCTCGTAACTCAGCCTGCGGAGTCACCAG
ATCTCAACATCAACGATTTGGGGTTCTGTACATATCTGAAAAGTAGGGTT
TGGAGGGAGCATTACGGTACGATAGATTGCCTTGTGGAGGGGGTGAAGAG
CATGTGTGATGCGTACGACGTGGCAACCTTAAAGAGGGTGTGGCAGAGCC
CCTTGAGCGGTATAATCAGGTCTTGAAGGTGCTAGGAGATAACGATTTCG
AGGTACAGCACACCGAAACCAAGAGAAGGCCGCGTGCGGGAAACCTGCTG
TAATCCGTCAAAATCGAGCGAGAGGCTTTTGACGTGGCGGTACAAAGGTG
GATTGATGGAAGTGAGAAAAACTGCGAAGAGTAAAATTAACGTGAAAAAC
ACCAATGAATCCGACGCAAAAAAACGTTATTGATTCAGAGGTCATTCCAA
CAAGTTATACGGTTAACGTCGTAGACTTATGGGACGGAGGGAGTATCATA
CCAAGGAAAAAAATCGCTTCGAGTAATGGGCATAGTTGATCGGAATGTCG
ATGCAGTCGACTGCAAAAAATTCAGCAATACAGGCAACGCTCGCCTCTAA
GCCTTATCTCACCTACGTGGTTTTCAGGTGCGTTGTTGACTAGTGCTTTC
ATCACATTTTCATGCGAACTTAAAATGCCCTTAGATAGTCGGTTCGAGTA
GATAAGTCTGCGTCTTTCCCCCCCCGCTTTGTTGTATACCTCGCCCCCCC
CCTCCTCGGCCGCCCAATAATATGCGTATACCCCCAATCACTAGTTGATT
CCCATTTCCAGTTTTTAATTGTTCGTTTTCCTTACGGCTGCAGCTCCGCT
TTTCCTTCCTGTTTCTCCTACTGCGCGTGAAACAAAACTGAAACGATCAA
ACACAACAAAATACAGCTCGCAAAAGCAGATCTTCAGGATAGGAGCAGAC
GAGAATAACAAAGCCCAAGACGTCTCCACAGACCCCGTGGGTTTAAAAAA
GGCGCAGGAGCGGTCTCTGGCATTACTCACCATCCAGAGCGTTGGTATCA
TTTCAGTCGCCATAACAGTCGGCACGGTGGTGCTCTACTGGCTCGCGGGC
GACTTCTTCGTGCACCTAGGCCCGCGCGAATACCCGGGAGCTTTGTCCAG
CCGATCTTCCTTGTTGAATTCTTCGCCCACAATAGAGCGAACAGTTGGAG
AAGAGGCGGGCGCAAATGAAGAGGCAGTTGTAGGGGGTGGGGGAGAGGAC
ACTGCTAGGCGATTGGTCGAACGAAGAGGAACAAGAGATGCGTTTCATTT
TGAGGGGTTTCCTGAGGTCGGGAGTGTCCGTCCTGATTTCTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10332:1558..7650+ >mRNA_H-paniculata_contig10332.219.1 ID=mRNA_H-paniculata_contig10332.219.1|Name=mRNA_H-paniculata_contig10332.219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig10332:1558..7650+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCTCTGACAAGCGGATCGCATTGCTCTCTTGCAGCCCCCTCTTCCCCCC CAAGAGATTTTGGCAGCCAATCATCACAGCCACTTCTAGTGTACTCGCCT GGCATACTCCCAAAATGCGAAGACGCTCGCTTTTTCTCGCGTTCGCAGCC TCTTTGCCCATACAAGGCATCTGCTTCATCGATTCCCCTCTCTTTTCTCG GTATCCTCGACTGCAACAGCAACAGCGAGTAGTACGTCAACATGGACACC AACATCGGCATGGTACGGGGGTGGCGCCGGCGCCGGCTATTTCATGGGGG TGGCCCTACGTAGTTCGGATTTCCTGCAGGAAACGCAACCGAAGGGATGG TGGTGTTGTGAGGTGGCGCTCTAACTTGGATGATTCTGATGATGCTTCTC CAGCTGCAGATGATGAGGATATGTATGCCTCTCTGAGGAAGCGGCTTGAA GAGCTCGAGAAGTCTGCTCCTGATGGTGGTGGTGTGCTCTGACAAGCGGA TCGCATTGCTCTCTTGCAGCCCCCTCTTCCCCCCCAAGAGATTTTGGCAG CCAATCATCACAGCCACTTCTAGTGTACTCGCCTGGCATACTCCCAAAAT GCGAAGACGCTCGCTTTTTCTCGCGTTCGCAGCCTCTTTGCCCATACAAG GCATCTGCTTCATCGATTCCCCTCTCTTTTCTCGGTATCCTCGACTGCAA CAGCAACAGCGAGTAGTACGTCAACATGGACACCAACATCGGCATGGTAC GGGGGTGGCGCCGGCGCCGGCTATTTCATGGGGGTGGCCCTACGTAGTTC GGATTTCCTGCAGGAAACGCAACCGAAGGGATGGTGGTGTTGTGAGGTGG CGCTCTAACTTGGATGATTCTGATGATGCTTCTCCAGCTGCAGATGATGA GGATATGTATGCCTCTCTGAGGAAGCGGCTTGAAGAGCTCGAGAAGTCTG CTCCTGATGGTGGTGGTGCACCTCGCCAACAGCTGTACGACTCTCGTGCA GCTTCCAGACCGTCTGCGGCGCGACACCTCGCCAACAGCTGTACGACTCT CGTGCAGCTTCCAGACCGTCTGCGGCGCGAGAGCAGACGAGAATAACAAA GCCCAAGACGTCTCCACAGACCCCGTGGGAGCAGACGAGAATAACAAAGC CCAAGACGTCTCCACAGACCCCGTGGCGGTCTCTGGCATTACTCACCATC CAGAGCGTTGGTATCATTTCAGTCGCCATAACAGTCGGCACGGTGGTGCT CTACTGGCTCGCGGGCGACTTCTTCGTGCACCTAGGCCCGCGCGAATACC CGGGAGCTTTGTCCAGCCGATCTTCCTTGTTGAATTCTTCGCCCACAATA GAGCGAACAGTTGGAGAAGAGGCGGGCGCAAATGAAGAGGCAGTTGTAGG GGGTGGGGGAGAGGACACTGCTAGGCGATTGGTCGAACGAAGAGGAACAA GAGATGCGTTTCATTTTGAGGGGTTTCCTGAGGTCGGGAGTGTCCGTCCT GATTTCTGACGGTCTCTGGCATTACTCACCATCCAGAGCGTTGGTATCAT TTCAGTCGCCATAACAGTCGGCACGGTGGTGCTCTACTGGCTCGCGGGCG ACTTCTTCGTGCACCTAGGCCCGCGCGAATACCCGGGAGCTTTGTCCAGC CGATCTTCCTTGTTGAATTCTTCGCCCACAATAGAGCGAACAGTTGGAGA AGAGGCGGGCGCAAATGAAGAGGCAGTTGTAGGGGGTGGGGGAGAGGACA CTGCTAGGCGATTGGTCGAACGAAGAGGAACAAGAGATGCGTTTCATTTT GAGGGGTTTCCTGAGGTCGGGAGTGTCCGTCCTGATTTCTGA back to top
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