mRNA_H-paniculata_contig10310.207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10310.207.1
Unique NamemRNA_H-paniculata_contig10310.207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10310.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10310contigH-paniculata_contig10310:5960..6883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10310.207.1prot_H-paniculata_contig10310.207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10310 5960..6741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928734.101202-CDS-H-paniculata_contig10310:5959..60571622928734.101202-CDS-H-paniculata_contig10310:5959..6057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10310 5960..6057 +
1691480599.4955018-CDS-H-paniculata_contig10310:5959..60571691480599.4955018-CDS-H-paniculata_contig10310:5959..6057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10310 5960..6057 +
1622928734.117635-CDS-H-paniculata_contig10310:6614..67411622928734.117635-CDS-H-paniculata_contig10310:6614..6741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10310 6615..6741 +
1691480599.5058844-CDS-H-paniculata_contig10310:6614..67411691480599.5058844-CDS-H-paniculata_contig10310:6614..6741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10310 6615..6741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928734.12912-UTR-H-paniculata_contig10310:6741..68831622928734.12912-UTR-H-paniculata_contig10310:6741..6883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10310 6742..6883 +
1691480599.5156808-UTR-H-paniculata_contig10310:6741..68831691480599.5156808-UTR-H-paniculata_contig10310:6741..6883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10310 6742..6883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10310.207.1

>prot_H-paniculata_contig10310.207.1 ID=prot_H-paniculata_contig10310.207.1|Name=mRNA_H-paniculata_contig10310.207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
TGRTGETVEGEVEKERQSQAGGLGIAVLKIGSSGLVTLNERVLRDRASSE
QNIEAAVSKWSQSVVSMMGSEEFI*
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mRNA from alignment at H-paniculata_contig10310:5960..6883+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10310.207.1 ID=mRNA_H-paniculata_contig10310.207.1|Name=mRNA_H-paniculata_contig10310.207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at H-paniculata_contig10310:5960..6883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGAGGACAGGCGAAACCGTCGAAGGAGAGGTCGAGAAAGAGCGGCA
GAGTCAGGCAGGGGGGCTCGGGATCGCGGTCTTGAAAATTGGAAGCAGGT
ATTGTGTTGTATTGTATTGTATTGTATTGTATTATTTTCGGTGCTACCAT
CAGTAGTAGTGAAACAAGGTTTGCGATGTACGCCCGGTACCTGCTGTTGA
AAGGCTAAACCCGAAGCTTTGGAGCTTGCTCGATCGTAGCTGCTAGTTGT
GGTGTTCGGTTCGTGGAGGAGCTAGAGTAATGCTGAGGCAGCGGTACGTA
GTGACACACGTCGATCGTGTTTACACGTGTCGGCATTACAAGTGTTGAAT
ATTCAATATGAGCATGAGCTTGAGCATGACAAAACTCAATAAGGTGGATC
GTATTCATGAATGTAAGATGAATAGCTCTTACCGCACCTTGCCTTTTTTG
GGGGGGCGGGGGCGCGATGCGCTGTATATTGGAGGCGTTGCGTGTAGTGT
GCATGATGCTTTGTCGGCAACGAGTGTGAGCGACGTTGCAGTTCATCGAG
GCAGCTCTTTGATGGTTGTTGACGTCAGAAGCATGACCCATCACATATCA
CATGATCCGTTCCCTCTTTTCCGTTCTGTTCCCCGTTAATACTGAATACT
GCCAGTGGTCTGGTAACCTTGAACGAACGTGTGTTGAGGGATAGGGCGAG
CAGCGAGCAGAATATCGAGGCTGCTGTAAGCAAGTGGAGTCAGTCAGTCG
TCAGTATGATGGGGTCCGAGGAGTTCATTTAGCACGACTGACACAATACA
CCGTATTTTAGTTTGGCGGTAGTTACCAAGACCCGGGATAATCGCTGTAG
GTTGGCTGCAAGTATGCAAGAGTAGCTTGGACTAGATGAGATGGGATGGG
CGCTTTCATTGCGCTGCGTTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10310:5960..6883+

>mRNA_H-paniculata_contig10310.207.1 ID=mRNA_H-paniculata_contig10310.207.1|Name=mRNA_H-paniculata_contig10310.207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig10310:5960..6883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGAGGACAGGCGAAACCGTCGAAGGAGAGGTCGAGAAAGAGCGGCA
GAGTCAGGCAGGGGGGCTCGGGATCGCGGTCTTGAAAATTGGAAGCAGAC
GGGGAGGACAGGCGAAACCGTCGAAGGAGAGGTCGAGAAAGAGCGGCAGA
GTCAGGCAGGGGGGCTCGGGATCGCGGTCTTGAAAATTGGAAGCAGTGGT
CTGGTAACCTTGAACGAACGTGTGTTGAGGGATAGGGCGAGCAGCGAGCA
GAATATCGAGGCTGCTGTAAGCAAGTGGAGTCAGTCAGTCGTCAGTATGA
TGGGGTCCGAGGAGTTCATTTAGTGGTCTGGTAACCTTGAACGAACGTGT
GTTGAGGGATAGGGCGAGCAGCGAGCAGAATATCGAGGCTGCTGTAAGCA
AGTGGAGTCAGTCAGTCGTCAGTATGATGGGGTCCGAGGAGTTCATTTAG
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