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Homology
BLAST of mRNA_H-paniculata_contig10303.203.1 vs. uniprot
Match: D7FVF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 2.880e-17 Identity = 48/121 (39.67%), Postives = 75/121 (61.98%), Query Frame = 2
Query: 884 QTLLQMTNRGIHPNEETCDKIVLYFLHEGQLSRALSFAQHSFNQYGCTPSAEVFTEVLKSAVEVGDEGKHEARRAVVIAKQLWSPEKRSNRSRKKRGKETLHPVFTDTMVDMLVDH-GVYE 1243
+ +++MTNRGI P+ D +V F+ G + A+SFAQH++NQYGC P+A F V+ +A + D+G+HEARRA+V+A+Q+W + R GK T HPV + L++ G ++
Sbjct: 8 KVMVEMTNRGIAPDSIVIDGVVGGFVQSGDVGEAISFAQHAYNQYGCAPTAGKFCRVVHAAAAL-DDGQHEARRAIVVAEQMWEGDWRGE------GK-TSHPVLGHANLRRLLEERGAFD 120
BLAST of mRNA_H-paniculata_contig10303.203.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.420e-14 Identity = 56/173 (32.37%), Postives = 87/173 (50.29%), Query Frame = 2
Query: 731 LVQIAARLGLHSQVIEVMHVMGENGFNPDVATFNAIITQQLARDGEFDIAWQTLLQMTNRGIHPNEETCDKIVLYFLHEGQLSRALSFAQHSFNQYGCTPSAEVFTEVLKSAVEVGDEGKHEARRAVVIAKQLWSPEKRSNRSRKKRGKETLHPVFTDTMVDMLVDH-GVYEE 1246
+V++ RL + Q E + VM GF PD TF+ +I LA+ G+ + AW+ + A+SFAQH++NQYGC P+A + V+ +A + D G+HEARRA+V+A+Q+W E R GK T HPV + L++ G +++
Sbjct: 2574 IVKVMCRLQMFDQAFEALEVMQSGGFEPDRFTFSTLI-HGLAKAGDNNGAWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGEAISFAQHAYNQYGCAPTAGKYCRVVHAAAALND-GQHEARRAIVVAEQMWEGEWRGE------GK-TSHPVLGHANLRRLLEERGAFDQ 2737
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | Pentatricopeptide repeat |
Ec32 ortholog | Ec-14_000950.1 |
Exons | 4 |
Model size | 2175 |
Cds size | 654 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10303.203.1 >prot_H-paniculata_contig10303.203.1 ID=prot_H-paniculata_contig10303.203.1|Name=mRNA_H-paniculata_contig10303.203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MGRGQGNFHVLHYPGRYCSLSLLLSLRLRFLGLLDWVSCFFVVFALVQIA ARLGLHSQVIEVMHVMGENGFNPDVATFNAIITQQLARDGEFDIAWQTLL QMTNRGIHPNEETCDKIVLYFLHEGQLSRALSFAQHSFNQYGCTPSAEVF TEVLKSAVEVGDEGKHEARRAVVIAKQLWSPEKRSNRSRKKRGKETLHPV FTDTMVDMLVDHGVYEE* back to topmRNA from alignment at H-paniculata_contig10303:2190..7903+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10303.203.1 ID=mRNA_H-paniculata_contig10303.203.1|Name=mRNA_H-paniculata_contig10303.203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5714bp|location=Sequence derived from alignment at H-paniculata_contig10303:2190..7903+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGGTGATTGTTTTTTTCCATAACGAAAAACCTCTTTTTGTCACACTCACA
CATACACATACACACCAGACTGATTTCTTAGACCCTCGGTCGAAACAAGT
GCACAAATGAGATGGTCTATATATGGACTAGTGTTGCGAAGGAGAACTAC
GATTTTCTGACCGCGGGCCTGCGTGATCGGGCTAAAGTATTGAATAATAG
TAAATTTAGGGAGTTTCACCTTTTATGTGTCACAGCCGGAAACGCGCGAA
ACAAACGAGCGCAAGACCAAACTAAGCTCTGCTGGAAATGCATGAGAGAT
ACATGCACAACTAGCGCACCGGTCCTACTCACCCCAACCTCGGTCGATAT
CGAGCTGTGTATGCCTTGCCCACTGGGCACAGGTTGAAAAGTGGAAACAA
ACATGTATACTGTTGGAATATGACCTGAAATGTACAAGGCGTCGGTGGGG
CACGTGTCAACGTGCGTCAAGTGTGTATGGCCGTTGAACGGTACTCATGT
TTGCATGCTACAGCCGTTACACCTTTGACCGCGTGTCCATTGGGGGACTG
ATCGTTGCTCCCCTAAAAGCTATCGCCGATGCCTGAAATGTGGAAATGGG
TCGGGGGCAGGGGAACTTCCACGTTTTGCATTATCCTGGTAGGTACTGCT
CGCTGTCACTGCTTTTGTCTCTCCGTCTACGCTTTCTTGGGCTTCTCGAT
TGGGTGTCATGTTTTTTTGTTGTTTTCGCTCTGGTGCAGATCGCTGCGCG
TCTCGGACTGCACTCCCAAGTGATCGAGGTCATGCACGTTATGGGGGAGA
ACGGTTTCAAGTACGTTATGTTACATCCCGCCTGCTACGCTTTTGGACGT
AGGTTTGCTTGCTGCGATTTGTTTTTAATTTCACGTCATGCCAGCGACTG
TCATCCACGTTGTTACGTCGACAGTAACCCATGACGCTATGTAGTCTCGG
GCAAGTTCGATTGCCATGTTAGATGAGCTTCGGACTTTTAAGATAGTGTA
GTGTGACAGAACGCTCGTGACTCGTCCGGGATCGGTTGGGATCGAGTCGC
AAAGCCGCAGAAACTATGGGCAAATCTGATGTGTGTGTGCTGGTGTTTAT
ATTGTATTTCCCTCCCCCGCGCGCCCCCTGCGTGCGCTCATGTGTTGGTC
ACCTGTTGCGGAATTAGCCCTGACGTTGCCACGTTCAACGCGATCATCAC
TCAGCAGTTAGCTCGTGATGGAGAGTTCGATATCGCTTGGCAGGTGAGCA
ATGAGTACGCACGGTAGAGTTGGAGAGGTGGAAAAATGCCCTCACAGCTC
CTTCCCCATCTCTGTCATTTTCTCTACAGATGGGCACAACTACAGGTACA
GATATGTGTATCCAGTTTCACAGGCTTGCAGAGGAATTACCTTCACCCAC
CTCTGCCCTTAACGGCACAAACGCAAAATGCCATGCTGGTTGAATCAAGA
CACATTTACTACACAATCTATACTCGAGGGACTCATGTATGCTTGCCGCC
ACTACCATGACGTGGTGGCAACATAACGGCATGTTGATCCTACAGTAATG
GGTGCGTTTGTTGTACGACGAGAGAATGTATTCATAATGCTCGGCTACTG
GGAAGAAGTCGCGGGCGCGACGATGTGACATGTCCTGTGATCCCCCTCCC
TTTGGAAAAGAGTCGAAAATGGCTCGGAGCAAGGAAGGAAAGCCAATAAA
AAAATACTTGAGAAACAGCGTCACGGAACTCACGACAAGCACTTTCGCGA
TGTATAAACAACACTGTTGTGGGTATGGTATTACTCCGTGCCTTGATGAT
GTTGTTGTGTATTGACTTGTGTGCTCTTGGCGATTGGGTTTCCAGGGCGT
TGTACATTTTTTGCAGAGGTCGTCACAGTACAGACAGTACAAGTAAATAC
CATACCGAGTATGGTGGTATTGATTCAGTATATTGGACTCTGTGAAAATT
AGAAAAGGGGGGAAGGAGAAAGATTTTGCATAAGCAAGGATTACCGAGTA
TTTTGGAACTATACATTTAAAAAAAAATCAAATCCAAAGCACTGAATCGA
GACCAGTAAACTACCCATTCGGTGGTAATGGTATAATGTGTTGTGACGAT
CTTTGCATTTTCGTTGTCGTTTATTGTTGTCTCTTCGTCGCGACGAATCG
CCAGTACCGCTACCGATGACTGCACGGTTGAATCGGGCGCGCTTGTTTTG
AATGAGAAGACGAGCACCATCATAATCCAGTCAACTATTACGGAGGCAAA
TTGTTAGTGACCAAATTGTTGCTCTATCGGAAAACGAGGGTCTGAACCCG
TTCGATCAAACCACCGTGCGGGACCAACATGTGTGGGGCAGTCTCGATCA
TCCGGTGTGCACCCACCATTCGGTTTTCGATTTACCCCCGTGATTGTGGA
GACACATGGAGTCGAATGGGGGCACATCGGGTGAAAGAGCAACAATTTGG
TATCATAAACAGTGTGCCTCCGTAATAGCGTCTGGTGAACCATACGTTAA
TTGTCAGCTAACCTTCAAGCTTTGTTGACTGTTTATCCGCTCGGTAATAC
AAAAACGGCCCATTTTTCACACTTCGGACAACTTTGACTGCCAGTCGTAG
TCGTGGTCTTCGTGTGTTTTTTTATTAGTCGACTGATTATTCGCACCAGT
CGACTGATAGTCGAGTCCATTTTCGGAATTTAGTCGCACCCGTCGACTGT
TAGTCGAGTCCATTTTCGGAATTCAGTCACATCAGTCGACTGGTAGTCGA
GTCCATTTTCGGAATTCAGTCGCATCAGTCGACTAACATATGTGTGATTT
TTTTCTTGTTCCAAGATGTTTTTCGGTGCAATCTTGTACGGCATAATTAC
TTTCCCCCGCTAATATCAACACGCAAAAACTTCGTAGATAATGCCGTAGG
TATTGCAGACGTAAATGATCGCCATCGACTTCTCTGCTTGTAACTTACTG
TAGAACTAAACACTATCACAAGCATGTAATAGTTTATGTGTAGCAGTAGC
ACGACGAAGCCGCGAGCAAGTGCAGGTGCATCAGCAAAACATTTAAACAC
CAAACAGAGCTCGCGACACAGCTGACGTACAGCGTGCTCTTGCAAAGCCG
ACCTCAGCAGTACTCTCGTGCATCAAAAGCCGGAGGTGTGGCAACGTTTC
ACCCCCTGAACGAGTACGAGTACTTGGGATGGTTGAGGAGATGAAAATGT
ATTCTTATGAGTTTCAGCATGTGGGGGATGACACATGAAATTAAGTGTTC
ACTCCCTATTGAATCGGCTTAATAGTTTTCGCCGCATTCGTAAATAGTCC
AGGGCAAATAGAAATCACGTCCTCATACTGAGCGTTCAGGCAAATTCTTT
TAAAGTTTTTTTATCTAGAGCCAATTGGAAGTGTTGGTATTTGTCGGGGC
GCGCGGGGGAGCGGGGGGAGGTGCAAGATTTTCTCGTCTCGGTGCTTACA
GAAGTATATCGATTTTTCGTGTGTGCTGGGTGTCCGATCCCAGACGCTGC
TGCAAATGACGAACAGGGGGATACACCCAAATGAAGAAACTTGCGACAAG
ATAGTGCTCTACTTCCTGCACGAGGGGCAACTGTCGCGTGCTCTCTCGTT
CGCCCAGCACTCCTTCAACCAGGTAACAAAAATCAAGAAGGATAAGGATC
GTCTCACGTCAGTCTGACTTCTCGTCTTAGTCTCTTCCGGGATGGTTTTT
TTTCATGTGTTTATGCTCGCGCCATAGGGACAATCCATCATCGTCTGCGT
GTATCTAATGGGAATTGAGGGAAGCAAAATATTCGCTTGTCTCATAAGTA
TGTGTGCTTATGGTTGAACGGTCATACTTTTTTCAAATTTGGGTTTCATT
GAAAACTGAGGATATCATTCGGAAGCTCGCTGAGCCGGTAAGGTACCCTG
GCTCTGGTGTTTAGCCTAGATTCAAGGGTGCAACGTGGAGGACCACGAAC
CGAGGGCTCATTGTTCCAAGGGTTTATCTCCTTTGGACCGGAGGAAGCTA
CAAAGTTGTGTTTGTCGTTACTGGAAGCCTCAATAAATGTCGTGTAGAGG
TTTGGGAACCCTAGCAACGAAATGAACGTTCTTTCCATGTTAGAGATAGT
GGAAGCAAAACATCCATATAGTGGAAAATCCTGCTGACAACAGAGAAGTA
CGGTGGAAAGGCTCGCCGCGATAGGGTGCATTTGATCCGCATCCTCTGAG
GACGTAATGATGAGGAATTTGTTATTTGCTATCTTTCTCTTCCCTCTTGC
GCCATCCGAGCTGAGTCGCTGGTTCACCGCCTTTCCACCGTGTTGGTTCT
TGGCTGTACCCCGTCTTACATGGAGTCGTCACTAGATCCGGTAAAAACGG
TAGTGAAAAGCGCTGCTTGTACTGTATTCTCTGAATTGACCAATAGAGCG
CACCTTCTATTCCCGAGTTTGGTTCCTGATTCACCAACGTTAGGTGAGGT
GTTTTTCCCTTTGATCTTTTGCTATTAATTCTGGAAAAAAGATAATCGCT
GAGCGCCCTTGCGTATCTCGCCCCGCGTCCTTGCTGTGCTTCTGCTTTCA
ACAGTACGGTTGTACTCCTTCCGCGGAGGTGTTTACTGAGGTGTTGAAGT
CTGCCGTGGAGGTCGGGGACGAAGGAAAGCACGAGGCTCGTAGGGCCGTG
GTGATTGCGAAACAGCTTTGGTCACCTGAGAAGAGAAGTAACCGATCCAG
AAAGAAAAGGGGCAAGGAGACACTCCACCCAGTTTTCACAGATACCATGG
TTGACATGCTTGTGGATCATGGCGTGTATGAAGAATAGTGTTTTCACATT
TATTTTAGAATACATACATTTTAAAGTTTGTGAACAGCTTGTCTGTTCGA
GTTTATGCCCAGCTAGCCCCCTGTTTGGACCTTCGTGCGTGCGTGCGTGC
ATGGGCCGGTGGACAGCCTTGAATAATGCGACCAATGGTCCACGTAAACC
AAACGGTGGCTATGGAGACTGTTGAGCGACGACATTTTCCCACGCCTACC
CTCACCAGGCCTGCTGTTGTTCATGGTCGGAATTTTTGCCCTCACGACCC
CGGCCTGTTGGCTGCTACGGTTGGATCTATTGATTCGATTTGAAGAAAAA
TCATGAGCGGCGCTCGAGCTCTATCATCGGTACAGTAAAGTGGTCGCGCG
TGCCGACCTTCTCCCAGCAGCGCAACACGCTGTCGACTTGTAGAGGATGA
TCAAGTTTGCCGGTGTTGAGAAATCCGCCGCTTTTGAGCTAGGGCTGAAG
GTTACAAGGTCCTCGTCCGTTTCCCCTCTCATCTTGCCTCCCTTTGTGTG
CTACGAGTTGCTGTTTGATTTCCACCTTGTGGCCAGCTTGACAGTACAGC
TGTGCTGGTAGTCAAAAAGAGACAGTTGCGCTCTCATGGTTAATTTTTGT
ATTCCACGCACTCTGCGTACGCTTCGAAGAAGAGGGCAGGGTTGCTCCCC
ACACGATTGATTTTATCGGGTCGGTTTCTACAAACTATTTGTTTGCCATT
GAGTGAGCAGAGAAAGTTGCGATGGAAAAGGCTGTTGTAGAGGAAGCTGG
AGCTTGCCACGTGCGCATTAGATCGCCTTCATGTCGCGAGACCGGTTTCC
TGTCGTCTGCGAAGTCAAAATGCATTCTGCTGTTCAGGTCTGGAAGGCGA
TATTCTTTTTCTAAATAAATGGGAGTATGTAGAACTGATCTCATTCTTGT
CATGGAAATTGCTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10303:2190..7903+ >mRNA_H-paniculata_contig10303.203.1 ID=mRNA_H-paniculata_contig10303.203.1|Name=mRNA_H-paniculata_contig10303.203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig10303:2190..7903+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGTCGGGGGCAGGGGAACTTCCACGTTTTGCATTATCCTGGTAGGTA CTGCTCGCTGTCACTGCTTTTGTCTCTCCGTCTACGCTTTCTTGGGCTTC TCGATTGGGTGTCATGTTTTTTTGTTGTTTTCGCTCTGGTGCAGATCGCT GCGCGTCTCGGACTGCACTCCCAAGTGATCGAGGTCATGCACGTTATGGG GGAGAACGGTTTCAAATGGGTCGGGGGCAGGGGAACTTCCACGTTTTGCA TTATCCTGGTAGGTACTGCTCGCTGTCACTGCTTTTGTCTCTCCGTCTAC GCTTTCTTGGGCTTCTCGATTGGGTGTCATGTTTTTTTGTTGTTTTCGCT CTGGTGCAGATCGCTGCGCGTCTCGGACTGCACTCCCAAGTGATCGAGGT CATGCACGTTATGGGGGAGAACGGTTTCAACCCTGACGTTGCCACGTTCA ACGCGATCATCACTCAGCAGTTAGCTCGTGATGGAGAGTTCGATATCGCT TGGCAGCCCTGACGTTGCCACGTTCAACGCGATCATCACTCAGCAGTTAG CTCGTGATGGAGAGTTCGATATCGCTTGGCAGACGCTGCTGCAAATGACG AACAGGGGGATACACCCAAATGAAGAAACTTGCGACAAGATAGTGCTCTA CTTCCTGCACGAGGGGCAACTGTCGCGTGCTCTCTCGTTCGCCCAGCACT CCTTCAACCAGACGCTGCTGCAAATGACGAACAGGGGGATACACCCAAAT GAAGAAACTTGCGACAAGATAGTGCTCTACTTCCTGCACGAGGGGCAACT GTCGCGTGCTCTCTCGTTCGCCCAGCACTCCTTCAACCAGTACGGTTGTA CTCCTTCCGCGGAGGTGTTTACTGAGGTGTTGAAGTCTGCCGTGGAGGTC GGGGACGAAGGAAAGCACGAGGCTCGTAGGGCCGTGGTGATTGCGAAACA GCTTTGGTCACCTGAGAAGAGAAGTAACCGATCCAGAAAGAAAAGGGGCA AGGAGACACTCCACCCAGTTTTCACAGATACCATGGTTGACATGCTTGTG GATCATGGCGTGTATGAAGAATAGTACGGTTGTACTCCTTCCGCGGAGGT GTTTACTGAGGTGTTGAAGTCTGCCGTGGAGGTCGGGGACGAAGGAAAGC ACGAGGCTCGTAGGGCCGTGGTGATTGCGAAACAGCTTTGGTCACCTGAG AAGAGAAGTAACCGATCCAGAAAGAAAAGGGGCAAGGAGACACTCCACCC AGTTTTCACAGATACCATGGTTGACATGCTTGTGGATCATGGCGTGTATG AAGAATAG back to top
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