mRNA_H-paniculata_contig103.199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig103.199.1
Unique NamemRNA_H-paniculata_contig103.199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig103.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig103contigH-paniculata_contig103:9690..10705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004020.1
Exons1
Model size1016
Cds size558
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.7234051-CDS-H-paniculata_contig103:9689..102471622928732.7234051-CDS-H-paniculata_contig103:9689..10247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 9690..10247 +
1691480598.8227618-CDS-H-paniculata_contig103:9689..102471691480598.8227618-CDS-H-paniculata_contig103:9689..10247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 9690..10247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.7348824-UTR-H-paniculata_contig103:10247..107051622928732.7348824-UTR-H-paniculata_contig103:10247..10705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig103 10248..10705 +
1691480598.8326237-UTR-H-paniculata_contig103:10247..107051691480598.8326237-UTR-H-paniculata_contig103:10247..10705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig103 10248..10705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig103.199.1prot_H-paniculata_contig103.199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig103 9690..10247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig103.199.1

>prot_H-paniculata_contig103.199.1 ID=prot_H-paniculata_contig103.199.1|Name=mRNA_H-paniculata_contig103.199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MPGTGGRKRRRRQPESQASTASPSAPAAALPSLVTLAPAHLRSSSAQQVT
RTTANANAIATTRDNSINERPHSTEPKHAAPQPLTDDSELQAQISILSQI
SVCGYGSIPGTPLSYGEKFPSSLRGASRRRHNGRTGNGARASTAGSTSWK
REPWMGPMESNVIGQRSQSVQGPLVQASVILHFAC*
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mRNA from alignment at H-paniculata_contig103:9690..10705+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig103.199.1 ID=mRNA_H-paniculata_contig103.199.1|Name=mRNA_H-paniculata_contig103.199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-paniculata_contig103:9690..10705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGGCACCGGTGGTAGAAAGCGTCGCCGCCGGCAACCGGAAAGCCA
AGCGAGCACCGCCAGCCCTTCCGCTCCCGCTGCCGCCCTACCCAGTCTAG
TCACCTTGGCTCCAGCCCACCTTCGTTCCTCGTCAGCACAGCAAGTCACT
CGAACAACCGCCAACGCCAACGCTATCGCCACCACCCGCGACAACAGTAT
CAACGAGCGACCACATTCTACGGAACCCAAACATGCAGCACCTCAGCCAC
TGACAGACGACTCTGAGCTCCAAGCACAAATATCGATCCTGTCACAAATC
AGTGTGTGTGGCTATGGTTCAATCCCGGGTACTCCTCTCTCTTATGGCGA
AAAATTTCCCTCTTCTCTACGTGGCGCGAGTCGACGTCGTCATAACGGTA
GAACAGGTAACGGAGCGAGGGCAAGCACCGCAGGCAGCACTTCGTGGAAA
CGGGAGCCCTGGATGGGCCCCATGGAGTCAAATGTAATAGGGCAGCGATC
GCAAAGCGTACAAGGACCACTGGTACAGGCGAGTGTTATTTTGCATTTTG
CGTGCTGAACATGAACAAAATTTCCAGTCGTCCAGTTGGCTGTAGTATTA
TACCACACCTAACCCAAAAACAGCGGTGTAAGATTGTAGGACTTGTGGGG
GTATGAGAGGTGTGTACCCTCCACAAGTTAATAAGATCTCGCAGACATTC
TAGGTCCGCTTACACGAACCAATGTAGCCGTTCTGAACGAGCGACTCTGA
TTTTCCGATTTACAACTTTACAAACGTCACCGCACAGAAGAGCTCCTCAT
CGCTGTAGAACTCCGTGGCGAATACGGTACAACGTTCCTGGTAGACCAAA
CAGAACAGCCAAAAATCTTCCTCGTGCCGAATAAATCAACACACAGTAGC
ACGGACTGCTCTAGAACGTGTTCTTATACGGCACAGTGATGCTGGTACAT
TTCATTGTTCTGTTCTTGATCTATCGAAAGTGTGGGTTTTTCTCTTTCGT
GTACCGCAAACATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig103:9690..10705+

>mRNA_H-paniculata_contig103.199.1 ID=mRNA_H-paniculata_contig103.199.1|Name=mRNA_H-paniculata_contig103.199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig103:9690..10705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGGCACCGGTGGTAGAAAGCGTCGCCGCCGGCAACCGGAAAGCCA
AGCGAGCACCGCCAGCCCTTCCGCTCCCGCTGCCGCCCTACCCAGTCTAG
TCACCTTGGCTCCAGCCCACCTTCGTTCCTCGTCAGCACAGCAAGTCACT
CGAACAACCGCCAACGCCAACGCTATCGCCACCACCCGCGACAACAGTAT
CAACGAGCGACCACATTCTACGGAACCCAAACATGCAGCACCTCAGCCAC
TGACAGACGACTCTGAGCTCCAAGCACAAATATCGATCCTGTCACAAATC
AGTGTGTGTGGCTATGGTTCAATCCCGGGTACTCCTCTCTCTTATGGCGA
AAAATTTCCCTCTTCTCTACGTGGCGCGAGTCGACGTCGTCATAACGGTA
GAACAGGTAACGGAGCGAGGGCAAGCACCGCAGGCAGCACTTCGTGGAAA
CGGGAGCCCTGGATGGGCCCCATGGAGTCAAATGTAATAGGGCAGCGATC
GCAAAGCGTACAAGGACCACTGGTACAGGCGAGTGTTATTTTGCATTTTG
CGTGCTGAATGCCCGGCACCGGTGGTAGAAAGCGTCGCCGCCGGCAACCG
GAAAGCCAAGCGAGCACCGCCAGCCCTTCCGCTCCCGCTGCCGCCCTACC
CAGTCTAGTCACCTTGGCTCCAGCCCACCTTCGTTCCTCGTCAGCACAGC
AAGTCACTCGAACAACCGCCAACGCCAACGCTATCGCCACCACCCGCGAC
AACAGTATCAACGAGCGACCACATTCTACGGAACCCAAACATGCAGCACC
TCAGCCACTGACAGACGACTCTGAGCTCCAAGCACAAATATCGATCCTGT
CACAAATCAGTGTGTGTGGCTATGGTTCAATCCCGGGTACTCCTCTCTCT
TATGGCGAAAAATTTCCCTCTTCTCTACGTGGCGCGAGTCGACGTCGTCA
TAACGGTAGAACAGGTAACGGAGCGAGGGCAAGCACCGCAGGCAGCACTT
CGTGGAAACGGGAGCCCTGGATGGGCCCCATGGAGTCAAATGTAATAGGG
CAGCGATCGCAAAGCGTACAAGGACCACTGGTACAGGCGAGTGTTATTTT
GCATTTTGCGTGCTGA
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