mRNA_H-paniculata_contig103.198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig103.198.1
Unique NamemRNA_H-paniculata_contig103.198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig103.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig103contigH-paniculata_contig103:7856..9613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.6528008-CDS-H-paniculata_contig103:7855..78761622928732.6528008-CDS-H-paniculata_contig103:7855..7876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 7856..7876 -
1691480598.795181-CDS-H-paniculata_contig103:7855..78761691480598.795181-CDS-H-paniculata_contig103:7855..7876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 7856..7876 -
1622928732.665996-CDS-H-paniculata_contig103:9323..95541622928732.665996-CDS-H-paniculata_contig103:9323..9554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 9324..9554 -
1691480598.805274-CDS-H-paniculata_contig103:9323..95541691480598.805274-CDS-H-paniculata_contig103:9323..9554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig103 9324..9554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.6840925-UTR-H-paniculata_contig103:9554..96131622928732.6840925-UTR-H-paniculata_contig103:9554..9613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig103 9555..9613 -
1691480598.8138497-UTR-H-paniculata_contig103:9554..96131691480598.8138497-UTR-H-paniculata_contig103:9554..9613Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig103 9555..9613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig103.198.1prot_H-paniculata_contig103.198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig103 7856..9554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig103.198.1

>prot_H-paniculata_contig103.198.1 ID=prot_H-paniculata_contig103.198.1|Name=mRNA_H-paniculata_contig103.198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MTVSGSLPVRGCCGKTKTVKCGEISKPEDGVGAVRCKKIGSHPAIRVRFH
FRVATRYASSRAELWRRRCPSWNRSVMVCHEQDA
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mRNA from alignment at H-paniculata_contig103:7856..9613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig103.198.1 ID=mRNA_H-paniculata_contig103.198.1|Name=mRNA_H-paniculata_contig103.198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig103:7856..9613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAAGCGCAACGCGCGGCGGTAAAACTACTATCGGCGTAATCACCCGTT
CAATGTTCGATGACGGTTTCTGGTTCTCTGCCGGTTCGTGGCTGTTGCGG
CAAAACAAAAACAGTAAAATGCGGCGAGATCTCGAAACCAGAAGATGGCG
TGGGTGCTGTGCGGTGCAAGAAGATTGGATCCCACCCTGCGATAAGAGTA
CGTTTTCATTTCAGGGTAGCCACCAGATATGCCTCCTCACGAGCAGAGCT
TTGGAGGCGTCGATGTCCCAGCTGGAATAGATCCGTTATGGTGAGTCGAC
CACTTGCATCAAAACCGCGCTGGAAGTGATTCAAGATGGCGGAACAAATT
GCGACTTGTTAATAACTGCGTACAAAGGTGTGATCGATTCAAGAAAGGTA
TACACGTAAAAGGAATTAGGCATACTCATGTGGCGTCAAATACAGCACCC
GCCAAATTCTCACGAGTCGGGGACGATTGCGTAATTGTAGCGAACACGGG
CCGCTTCGCTCCATGGTATAGTTCGATCGACCATTTGTACTCTTGTTTCA
GGTCTACATGCAGAAAATATATAAATATCAGCAATTCAGACGGGCTTTAG
AACTTGATGTGAAAACGCACTCGTGCTCGAATACCCATGGGTATGACACA
TGGGGAGATAACAATCTACTTGGAATTCTGACAACTTCGCTTGTTGCTCT
TTGTCACAAAGCTCTGGTTGACAAGGTGGTATCAATTCAGCGACACAGTT
CGGCTACAAACGGTCATAGTATGCGACCGAATTCTATCAGCAGACAAAAC
GGTACAGCTGTTACGCGCCTTCAGTAAATCAAGCTTGCAGAACACTCGTC
AAAAGGCAGCCAAGCACACAGCCAAATCGTCGCACGTGAATACTCAAGGC
TAACACAGGCTTGACACGCGTCAAATTGCCAAACGTTTTTGTTCAGGAAA
ACCCAATCTCGAGGTCTCTTATCTTAGTCCTTATCTGAACGCGAAAGGAT
ATCATGTCAACGGTCTACAGTAGCAACAGTAACCCGAGCTTCGCTGCCAT
AGGCACACCAATAAACGGGAGGCAAAGGAGACAACACATTCGTCTTCCAT
TACTTGTTTAATGGTCATCCTTTGTGGGGATACTCCTCATACGCTTACAC
AGATCTCAGCTCGAAATCTGGTGAGCGGGTATCGGCTGTTCTACAGTCAA
GGTGGGGGCGAGCAAAGCTCGCCTCAACGGCAGCTATATTAGATGCCTGT
ATCCTATCCCATGGGCGGAGCGGGGACAGGAAGCAATAGGTTTAAGACAT
CCCCATAGTATCCCATTTTCTTGTCAACACTACGCTAGGTAGTGAGGACT
CGCGTCAGTCCCACCTGCTGTCACAGGGAAACTCAACAGCTATACAACTG
TAAACTGTACCATTCCTGGAGGGTGTTTGTATGCAACCATAGAGCTACAC
CCGTCATGGAATTGTACAAAGATCCAACCATTTAGGACGTTTCTTGCAAA
ATCCATACCCACGCTCCTAAGTCATATAGGATATTGCTCCATCTTTGTGA
TCTGATGAAACTCTTCTCTCCTAGGCGCCATCAATCCTTCCAGCTGTTCG
GCTAAATAATTTCTAAGAGCAAATTGAGCCCTGGGTCTCTGCACTAAATT
ATGGTGGTCTACAAGTGCCAGGTATTTCATCTACGGGCATGTCATCCATG
AAACAAACCTCGATTTCCTCCCGATTTCCCCCGTCAGGTATGCCATGAGC
AAGATGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig103:7856..9613-

>mRNA_H-paniculata_contig103.198.1 ID=mRNA_H-paniculata_contig103.198.1|Name=mRNA_H-paniculata_contig103.198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig103:7856..9613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGTTTCTGGTTCTCTGCCGGTTCGTGGCTGTTGCGGCAAAACAAA
AACAGTAAAATGCGGCGAGATCTCGAAACCAGAAGATGGCGTGGGTGCTG
TGCGGTGCAAGAAGATTGGATCCCACCCTGCGATAAGAGTACGTTTTCAT
TTCAGGGTAGCCACCAGATATGCCTCCTCACGAGCAGAGCTTTGGAGGCG
TCGATGTCCCAGCTGGAATAGATCCGTTATGATGACGGTTTCTGGTTCTC
TGCCGGTTCGTGGCTGTTGCGGCAAAACAAAAACAGTAAAATGCGGCGAG
ATCTCGAAACCAGAAGATGGCGTGGGTGCTGTGCGGTGCAAGAAGATTGG
ATCCCACCCTGCGATAAGAGTACGTTTTCATTTCAGGGTAGCCACCAGAT
ATGCCTCCTCACGAGCAGAGCTTTGGAGGCGTCGATGTCCCAGCTGGAAT
AGATCCGTTATGGTATGCCATGAGCAAGATGCGGTATGCCATGAGCAAGA
TGCG
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