mRNA_H-paniculata_contig10294.195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10294.195.1
Unique NamemRNA_H-paniculata_contig10294.195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10294.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10294contigH-paniculata_contig10294:5822..8718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size903
Cds size903
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.2897563-CDS-H-paniculata_contig10294:5821..59661622928732.2897563-CDS-H-paniculata_contig10294:5821..5966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 5822..5966 +
1691480598.620596-CDS-H-paniculata_contig10294:5821..59661691480598.620596-CDS-H-paniculata_contig10294:5821..5966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 5822..5966 +
1622928732.3086038-CDS-H-paniculata_contig10294:6257..63331622928732.3086038-CDS-H-paniculata_contig10294:6257..6333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 6258..6333 +
1691480598.6329784-CDS-H-paniculata_contig10294:6257..63331691480598.6329784-CDS-H-paniculata_contig10294:6257..6333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 6258..6333 +
1622928732.324842-CDS-H-paniculata_contig10294:6707..68891622928732.324842-CDS-H-paniculata_contig10294:6707..6889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 6708..6889 +
1691480598.648983-CDS-H-paniculata_contig10294:6707..68891691480598.648983-CDS-H-paniculata_contig10294:6707..6889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 6708..6889 +
1622928732.339266-CDS-H-paniculata_contig10294:7179..72551622928732.339266-CDS-H-paniculata_contig10294:7179..7255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 7180..7255 +
1691480598.6624064-CDS-H-paniculata_contig10294:7179..72551691480598.6624064-CDS-H-paniculata_contig10294:7179..7255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 7180..7255 +
1622928732.3550708-CDS-H-paniculata_contig10294:7629..78111622928732.3550708-CDS-H-paniculata_contig10294:7629..7811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 7630..7811 +
1691480598.6706758-CDS-H-paniculata_contig10294:7629..78111691480598.6706758-CDS-H-paniculata_contig10294:7629..7811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 7630..7811 +
1622928732.3823774-CDS-H-paniculata_contig10294:8102..81781622928732.3823774-CDS-H-paniculata_contig10294:8102..8178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 8103..8178 +
1691480598.6800437-CDS-H-paniculata_contig10294:8102..81781691480598.6800437-CDS-H-paniculata_contig10294:8102..8178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 8103..8178 +
1622928732.3966577-CDS-H-paniculata_contig10294:8552..87181622928732.3966577-CDS-H-paniculata_contig10294:8552..8718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 8553..8718 +
1691480598.688578-CDS-H-paniculata_contig10294:8552..87181691480598.688578-CDS-H-paniculata_contig10294:8552..8718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 8553..8718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10294.195.1prot_H-paniculata_contig10294.195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10294 5822..8718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10294.195.1

>prot_H-paniculata_contig10294.195.1 ID=prot_H-paniculata_contig10294.195.1|Name=mRNA_H-paniculata_contig10294.195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
DRKRANVGPKADGHRTASEVGHGLQSANPLTTTLATASSTSMTFPSPPEP
FPEMSPHRRGYCVRHHAGPARTPSGTSSTPSLSSTGDRKQANVGPKADGH
QTASEVGHGLQSANPLTTTPATASSASMTSPSPPEPFPEISPHRRGYCVR
HHAGPARTPSGTSSTPSHSSTGDRKRANVGPKADDHRTSSEVGEGLQSAT
PLTTTPATASSTSMTSPSPPEPFPEIPPHLRKYCVRHETLPARPPSGTSS
TPSHSSTGDRKRANVGPKADDHRTASEVGEGLQSATPLTTTPATASSTSM
T
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mRNA from alignment at H-paniculata_contig10294:5822..8718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10294.195.1 ID=mRNA_H-paniculata_contig10294.195.1|Name=mRNA_H-paniculata_contig10294.195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2897bp|location=Sequence derived from alignment at H-paniculata_contig10294:5822..8718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGCAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGC
GAGCGAGGTCGGTCACGGCCTCCAGTCGGCGAATCCTCTCACCACGACGC
TGGCAACCGCGAGCAGCACCTCCATGACCTTTCCGTCCCCGCCAGGTGCG
TACGGAACCGCCAGCGTTACTCGCAATCGACGCGTCAACAACGTGCAGTA
TATCCCGACCCCAAAAGTAGTAGCAGTGTCGGGCCATCGTCGTGCAGTGG
CTCTAGGCGTTTGCACTCCGACGTCGTTGCATATAGATAAACGTAGAAAC
GTCGCATACACTCACGATATGCCTCAAGTCGTTATGATTAATAGTCGTAC
CCTCGCTTTTCCCCCGCCGCCTCGCCGTCCCGCCCCCGTCGTCTCGCCTC
TCTTCGGACGACTGACACGCGTCCACCTTTCTTTAGAGCCCTTCCCCGAG
ATGTCGCCACACCGCCGCGGATATTGCGTGCGGCATCACGCCGGCCCTGC
ACGGACGCCTAGGTAAGGTTACTCGGTGATGTAAGGACGGTGTGGTATAA
GGCGAATTTCTCGCTCGGACTCCGATACATGCTGGTTCGTCGTGTCGCGT
TCGAGCGGTGCCGTCTAGTAGGGCGAAGATAGTGACAAATGCAGTATCTC
TCCGACGAACGAACAAGAGAGAGTGAACCCAATATCCTGTGTGGATTTAC
CGTCCGGACGTCAGGTGGTAGGGAGTCCCAAAGAGAGACACGGCTGAACA
ATATAGGACGGAAATCGCAGATACCGTGTGTCCCTCTAAATTTCCGGACG
CAAGACCCAACATCACCCGTAAACCCCCGCTCTCGTTGCCGTTCGATTTT
CCGTAATTTTTTCATGCACTCGGTGTCCGACGTCAGCGGGACCTCGTCGA
CTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCAAGCAAATGTTGGTCCC
AAGGCCGACGGTCACCAGACGGCGAGCGAGGTCGGTCACGGCCTCCAGTC
CGCGAATCCTCTCACCACCACGCCGGCAACCGCGAGCAGCGCCTCCATGA
CCTCTCCATCCCCGCCAGGTGCGTACGGAACCGCCAGCGTTACTCGCAAT
CGACGCGTCAACAACGTGCAGCATATCCCGAACAAAGATGTAGTAGCAGT
GTCGGACCATCGTCGTGTAGTTGCTCTAGGCGTTTGCACTCCGACGTCCC
TGCATGTATATACACGTAGAAACGTCGCACACACTCACGATATGCCTCAA
GTCGTTATGATTAATAGTCGAACCCTCAATTTTCCCCCGCTCCTATCCGC
CCCGCCCCCGTCGTCTCGCCTGTCTTTCGACAACTGACACGCCTCCACCT
TTCTTTAGAGCCCTTCCCCGAGATCTCACCTCACCGACGCGGATACTGCG
TGCGACATCACGCCGGCCCTGCACGGACGCCTAGGTAAGGTTACTCGGTG
ATGTAAGGACGGTGTTGTATAAGGCGAATTTCCCGCTCGGACTCCGATAC
ATGCTGGTTCATCGTGTTTCGTTCGAGCGGTGCCGTCTAGTAGGGCGAAG
ATAGTGACAAATGCAGTATCTCTCGGACGAACGAACAAGAGAGAGTGAAC
CCAATATCCTGTGTGGATTTACCGTCCGGACGTCAGGTGGTAGGGAGTCC
CGAAGAGAGACACGGCAGAATAATATAGGACGGAAATCGCAGATACCGTG
TGTCCCTCTAAATTCCCGGACGCAAGACCCAACATCACCCGTATACCCCC
GCTCTCGTTGCCGTTCGATTTTCCGTAAATGTTTCATACACTCGGTATCC
AACGTCAGCGGGACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACCG
CAAGCGGGCAAATGTTGGTCCCAAGGCCGACGATCACCGGACGTCGAGCG
AGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCA
ACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGTGCGTATGG
AACCGCCAGCGCTACTCGCAATCGACGCGTCAACAACGTGCAGCATATCC
CGAACAAAGATGTAGTAGCAGTGTCGGGCTATCTTCGTCCAGTGGCTCTA
GGCGTTTGCGCTCCGACGTGGCTGCATGTATGTACACGTAGAAACGTCGC
ACACACTCACGATATGCCTCAAGTCGTTATGATTAATATTCGTACCCTCG
CTTTCCACCCCCCGCCTCGCCACCCCGCCCCCGTCGTCTCGCCTGTCTTC
GGACAACTAACACGCCTCCACCTTTCTTTAGAGCCCTTCCCCGAGATTCC
GCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGC
CACCTAGGTAAGTTTACTCGGTGATGTAAGGACGGTGTTGTATAAGGCGA
ATTTCCCGCTCGGACTACGTTACATGCTGGTTCGTCGTGTCTCGTTCGAG
CGGTGCCGTCTAGTAGGGCGAAGATAGTGGCAAATGCAGTATCTCTCCGA
CGAACGAACAAGAGAGAGTGAACCCAATATCCTGTGTGGATTTACCGTCC
GGACGTCAGGTAGTAGGGAGTCCCGAAGAGAGACACGGCAGAATAATGTA
GGACGGAAATCGCAGATACCATGTGTCCCGCTAAATTCCCGGACGCAAGA
CCCAACATCACCCGTATACCCCCGCTCTCGTTGCCGTCCGATTTTCCGTA
AATGTTTCATACACTCGGTATCCGACGTCAGCGGGACCTCGTCGACTCCG
AGTCACTCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCAAGGC
CGACGATCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGA
CTCCTCTCACCACCACGCCGGCAACCGCGAGCAGCACCTCCATGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig10294:5822..8718+

>mRNA_H-paniculata_contig10294.195.1 ID=mRNA_H-paniculata_contig10294.195.1|Name=mRNA_H-paniculata_contig10294.195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig10294:5822..8718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGCAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGC
GAGCGAGGTCGGTCACGGCCTCCAGTCGGCGAATCCTCTCACCACGACGC
TGGCAACCGCGAGCAGCACCTCCATGACCTTTCCGTCCCCGCCAGGACCG
CAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCG
AGGTCGGTCACGGCCTCCAGTCGGCGAATCCTCTCACCACGACGCTGGCA
ACCGCGAGCAGCACCTCCATGACCTTTCCGTCCCCGCCAGAGCCCTTCCC
CGAGATGTCGCCACACCGCCGCGGATATTGCGTGCGGCATCACGCCGGCC
CTGCACGGACGCCTAGAGCCCTTCCCCGAGATGTCGCCACACCGCCGCGG
ATATTGCGTGCGGCATCACGCCGGCCCTGCACGGACGCCTAGCGGGACCT
CGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCAAGCAAATGTT
GGTCCCAAGGCCGACGGTCACCAGACGGCGAGCGAGGTCGGTCACGGCCT
CCAGTCCGCGAATCCTCTCACCACCACGCCGGCAACCGCGAGCAGCGCCT
CCATGACCTCTCCATCCCCGCCAGCGGGACCTCGTCGACTCCGAGTCTTT
CGTCGACGGGGGACCGCAAGCAAGCAAATGTTGGTCCCAAGGCCGACGGT
CACCAGACGGCGAGCGAGGTCGGTCACGGCCTCCAGTCCGCGAATCCTCT
CACCACCACGCCGGCAACCGCGAGCAGCGCCTCCATGACCTCTCCATCCC
CGCCAGAGCCCTTCCCCGAGATCTCACCTCACCGACGCGGATACTGCGTG
CGACATCACGCCGGCCCTGCACGGACGCCTAGAGCCCTTCCCCGAGATCT
CACCTCACCGACGCGGATACTGCGTGCGACATCACGCCGGCCCTGCACGG
ACGCCTAGCGGGACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACCG
CAAGCGGGCAAATGTTGGTCCCAAGGCCGACGATCACCGGACGTCGAGCG
AGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCA
ACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGCGGGACCTCG
TCGACTCCGAGTCACTCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGG
TCCCAAGGCCGACGATCACCGGACGTCGAGCGAGGTCGGCGAGGGTCTCC
AGTCGGCGACTCCTCTCACCACCACGCCGGCAACCGCGAGCAGCACCTCC
ATGACCTCTCCATCCCCGCCAGAGCCCTTCCCCGAGATTCCGCCTCACCT
CCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGCCACCTAGAG
CCCTTCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGA
GACCCTCCCAGCACGGCCACCTAGCGGGACCTCGTCGACTCCGAGTCACT
CGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCAAGGCCGACGAT
CACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCT
CACCACCACGCCGGCAACCGCGAGCAGCACCTCCATGACCCGGGACCTCG
TCGACTCCGAGTCACTCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGG
TCCCAAGGCCGACGATCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCC
AGTCGGCGACTCCTCTCACCACCACGCCGGCAACCGCGAGCAGCACCTCC
ATGACC
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