mRNA_H-paniculata_contig10294.194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10294.194.1
Unique NamemRNA_H-paniculata_contig10294.194.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10294.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10294contigH-paniculata_contig10294:3917..4491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.4902503-CDS-H-paniculata_contig10294:3916..41211622928732.4902503-CDS-H-paniculata_contig10294:3916..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 3917..4121 +
1691480598.7287905-CDS-H-paniculata_contig10294:3916..41211691480598.7287905-CDS-H-paniculata_contig10294:3916..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 3917..4121 +
1622928732.503312-CDS-H-paniculata_contig10294:4411..44911622928732.503312-CDS-H-paniculata_contig10294:4411..4491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 4412..4491 +
1691480598.7378507-CDS-H-paniculata_contig10294:4411..44911691480598.7378507-CDS-H-paniculata_contig10294:4411..4491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 4412..4491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10294.194.1prot_H-paniculata_contig10294.194.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10294 3917..4491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10294.194.1

>prot_H-paniculata_contig10294.194.1 ID=prot_H-paniculata_contig10294.194.1|Name=mRNA_H-paniculata_contig10294.194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MHSVSDVSGTSSTPSLSSTGDRKRANVGPKADGHRTASEVGDGLHSTPPL
TAMPATASSTSMTSPSPPEPFPEIPPHLRKYCVRHETLPARPPR*
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mRNA from alignment at H-paniculata_contig10294:3917..4491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10294.194.1 ID=mRNA_H-paniculata_contig10294.194.1|Name=mRNA_H-paniculata_contig10294.194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig10294:3917..4491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCGGTATCCGACGTCAGCGGGACCTCGTCGACTCCGAGTCTTTC
GTCGACGGGGGACCGCAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTC
ACCGGACGGCGAGCGAGGTCGGTGACGGCCTGCACTCGACGCCTCCTCTC
ACCGCCATGCCGGCAACCGCCAGCAGCACCTCCATGACCTCTCCATCACC
GCCAGGTGCGTACGGAACCGCCAGCGCTACTCGCAATCGACGCGTCAACA
ACGTGCAGCATATCCCGAACAATGATGTAGTAGCAGTGTCGGGCCATCGT
CGTGCAGTGGCTCTAGGCGTTTGTGCTCCGACGTGGCTGCATGTATATAC
ACGTAGAAACGTCGCACACACTCACGATATGCCTCAAGTCGTTATGATTA
ATAGTCGTACCCTCGCTTTTCCCCCGCTCCTATCCGCCCCGCCCCCGTCG
TCTCGCCTGTCTTCGGACAACTGACACGCCTCCACCTTTCCGTAGAGCCC
TTCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGAC
CCTCCCAGCACGGCCACCTAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10294:3917..4491+

>mRNA_H-paniculata_contig10294.194.1 ID=mRNA_H-paniculata_contig10294.194.1|Name=mRNA_H-paniculata_contig10294.194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig10294:3917..4491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCGGTATCCGACGTCAGCGGGACCTCGTCGACTCCGAGTCTTTC
GTCGACGGGGGACCGCAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTC
ACCGGACGGCGAGCGAGGTCGGTGACGGCCTGCACTCGACGCCTCCTCTC
ACCGCCATGCCGGCAACCGCCAGCAGCACCTCCATGACCTCTCCATCACC
GCCAGATGCACTCGGTATCCGACGTCAGCGGGACCTCGTCGACTCCGAGT
CTTTCGTCGACGGGGGACCGCAAGCGAGCAAATGTTGGTCCCAAGGCCGA
CGGTCACCGGACGGCGAGCGAGGTCGGTGACGGCCTGCACTCGACGCCTC
CTCTCACCGCCATGCCGGCAACCGCCAGCAGCACCTCCATGACCTCTCCA
TCACCGCCAGAGCCCTTCCCCGAGATTCCGCCTCACCTCCGCAAATACTG
CGTGAGGCACGAGACCCTCCCAGCACGGCCACCTAGGTAAAGCCCTTCCC
CGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCC
CAGCACGGCCACCTAGGTAA
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